Wall clock time and date at job start Tue Mar 31 2020 23:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38041 * 126.29143 * 2 1 4 4 C 1.47437 * 126.41274 * 0.05672 * 3 2 1 5 5 O 1.21596 * 119.99932 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99400 * 179.97438 * 4 3 2 7 7 C 1.47023 * 125.65079 * 0.02591 * 6 4 3 8 8 C 1.54327 * 107.26799 * 178.90177 * 7 6 4 9 9 C 1.55159 * 102.94356 * 337.80814 * 8 7 6 10 10 H 1.09001 * 111.00172 * 277.42303 * 9 8 7 11 11 C 1.50702 * 111.00408 * 153.61710 * 9 8 7 12 12 C 1.38230 * 119.61449 * 323.56421 * 11 9 8 13 13 C 1.38634 * 119.15674 * 179.97438 * 12 11 9 14 14 C 1.38674 * 118.42256 * 359.97438 * 13 12 11 15 15 C 1.38184 * 119.16117 * 359.97438 * 14 13 12 16 16 N 1.31854 * 119.61902 * 143.29221 * 11 9 8 17 17 C 1.47425 * 125.64330 * 179.71349 * 6 4 3 18 18 C 1.41289 * 107.16882 * 180.02562 * 3 2 1 19 19 N 1.30440 * 108.02360 * 359.73989 * 18 3 2 20 20 N 1.34256 * 126.29084 * 180.02562 * 2 1 3 21 21 C 1.46503 * 125.75406 * 359.96393 * 20 2 1 22 22 C 1.50697 * 109.47626 * 89.99658 * 21 20 2 23 23 H 1.08001 * 119.99674 * 359.97438 * 22 21 20 24 24 C 1.37877 * 120.00225 * 179.97438 * 22 21 20 25 25 N 1.31518 * 119.99922 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99846 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47559 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47049 * 120.00659 * 26 24 22 29 29 H 1.48504 * 109.46910 * 240.00044 * 26 24 22 30 30 H 1.08998 * 109.47642 * 270.00283 * 1 2 3 31 31 H 1.09004 * 109.47227 * 30.00588 * 1 2 3 32 32 H 1.09005 * 109.46833 * 149.99786 * 1 2 3 33 33 H 1.08998 * 109.88236 * 298.31735 * 7 6 4 34 34 H 1.08990 * 109.88266 * 59.48723 * 7 6 4 35 35 H 1.09007 * 110.72059 * 96.16942 * 8 7 6 36 36 H 1.08999 * 110.71980 * 219.43973 * 8 7 6 37 37 H 1.07998 * 120.42178 * 0.02562 * 12 11 9 38 38 H 1.08002 * 120.78416 * 179.97438 * 13 12 11 39 39 H 1.07995 * 120.41608 * 180.02562 * 14 13 12 40 40 H 1.07999 * 119.61743 * 180.02562 * 15 14 13 41 41 H 1.08994 * 110.37070 * 323.00475 * 17 6 4 42 42 H 1.09003 * 110.36778 * 85.32552 * 17 6 4 43 43 H 1.08000 * 125.98163 * 180.02562 * 18 3 2 44 44 H 1.08999 * 109.46809 * 329.99236 * 21 20 2 45 45 H 1.08998 * 109.47146 * 210.00124 * 21 20 2 46 46 H 0.96993 * 119.99855 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 0.0012 5 8 0.6996 2.7877 0.0018 6 7 2.7999 3.5107 0.0015 7 6 4.2590 3.3300 0.0003 8 6 4.8947 4.7360 -0.0269 9 6 3.7603 5.6190 -0.6106 10 1 3.7414 5.5619 -1.6989 11 6 3.8964 7.0475 -0.1500 12 6 4.3433 7.3125 1.1310 13 6 4.4655 8.6300 1.5446 14 6 4.1327 9.6362 0.6502 15 6 3.6940 9.2946 -0.6148 16 7 3.5931 8.0300 -0.9753 17 6 2.5023 4.9545 -0.0033 18 6 3.6590 0.6498 -0.0006 19 7 3.6340 -0.6544 0.0047 20 7 2.3017 -1.0821 -0.0005 21 6 1.8500 -2.4758 -0.0004 22 6 1.6944 -2.9537 -1.4211 23 1 1.9098 -2.2858 -2.2420 24 6 1.2768 -4.2433 -1.6728 25 7 1.0140 -5.0564 -0.6731 26 14 1.0846 -4.8358 -3.4339 27 1 1.4394 -3.7368 -4.3674 28 1 1.9839 -5.9942 -3.6674 29 1 -0.3232 -5.2473 -3.6668 30 1 -0.3634 0.0001 1.0276 31 1 -0.3634 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5139 33 1 4.5678 2.8010 0.9019 34 1 4.5623 2.7689 -0.8834 35 1 5.1565 5.0605 0.9803 36 1 5.7690 4.7513 -0.6776 37 1 4.5948 6.5035 1.8007 38 1 4.8116 8.8671 2.5398 39 1 4.2162 10.6736 0.9385 40 1 3.4332 10.0723 -1.3174 41 1 1.6285 5.1597 -0.6216 42 1 2.3408 5.3120 1.0137 43 1 4.5448 1.2676 -0.0004 44 1 0.8917 -2.5471 0.5141 45 1 2.5849 -3.0958 0.5131 46 1 0.7199 -5.9636 -0.8502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890398329.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:47 Heat of formation + Delta-G solvation = 58.997584 kcal Electronic energy + Delta-G solvation = -28426.317250 eV Core-core repulsion = 24509.681895 eV Total energy + Delta-G solvation = -3916.635355 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.40731 -41.43032 -40.32246 -38.32436 -35.84347 -34.34245 -33.64196 -33.32089 -32.72936 -31.07336 -30.18914 -28.83197 -28.18484 -25.70354 -25.11857 -24.61892 -23.82132 -22.37339 -21.66529 -21.17767 -19.84163 -18.87528 -18.26660 -18.05746 -17.38489 -16.93497 -16.71164 -16.56957 -16.32030 -16.13207 -15.80940 -15.21364 -15.07393 -14.83021 -14.46193 -14.36440 -14.33303 -14.07423 -13.88676 -13.86555 -13.63798 -13.54105 -13.41559 -13.13365 -12.95845 -12.73294 -12.56717 -12.36647 -12.32872 -12.15408 -11.85062 -11.74059 -11.66011 -10.84688 -10.77096 -10.76704 -10.32949 -10.27388 -9.86920 -9.77174 -9.39104 -8.38857 -6.55066 0.18392 0.41652 0.64644 1.31002 1.35542 1.38082 1.49046 1.63965 2.04028 2.31855 2.48008 2.83099 2.93167 3.24636 3.51226 3.57622 3.73073 3.85891 3.97893 4.04704 4.08961 4.17278 4.19920 4.21526 4.27087 4.32525 4.41192 4.47951 4.63543 4.66087 4.74383 4.77342 4.80580 4.84758 4.88845 4.94851 5.04656 5.07026 5.13591 5.17953 5.32254 5.35124 5.40469 5.48662 5.66987 5.74080 5.83959 6.03304 6.50204 6.54240 6.81780 7.10431 7.16046 7.23918 8.69250 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027593 B = 0.002056 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.518029 B =13617.012584 C =13663.274794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.146 3.854 3 C -0.328 4.328 4 C 0.616 3.384 5 O -0.586 6.586 6 N -0.614 5.614 7 C 0.084 3.916 8 C -0.113 4.113 9 C -0.046 4.046 10 H 0.091 0.909 11 C 0.125 3.875 12 C -0.170 4.170 13 C -0.076 4.076 14 C -0.174 4.174 15 C 0.084 3.916 16 N -0.517 5.517 17 C 0.125 3.875 18 C 0.068 3.932 19 N -0.334 5.334 20 N -0.337 5.337 21 C 0.267 3.733 22 C -0.555 4.555 23 H 0.051 0.949 24 C 0.024 3.976 25 N -0.916 5.916 26 Si 0.972 3.028 27 H -0.274 1.274 28 H -0.272 1.272 29 H -0.269 1.269 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.156 0.844 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.171 0.829 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.231 0.769 44 H 0.050 0.950 45 H 0.034 0.966 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.723 28.265 5.156 30.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.010 3.990 3 C -0.343 4.343 4 C 0.408 3.592 5 O -0.468 6.468 6 N -0.347 5.347 7 C -0.038 4.038 8 C -0.151 4.151 9 C -0.066 4.066 10 H 0.110 0.890 11 C -0.012 4.012 12 C -0.189 4.189 13 C -0.102 4.102 14 C -0.194 4.194 15 C -0.073 4.073 16 N -0.226 5.226 17 C 0.002 3.998 18 C -0.118 4.118 19 N -0.154 5.154 20 N -0.114 5.114 21 C 0.148 3.852 22 C -0.593 4.593 23 H 0.069 0.931 24 C -0.178 4.178 25 N -0.554 5.554 26 Si 0.796 3.204 27 H -0.198 1.198 28 H -0.197 1.197 29 H -0.194 1.194 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.174 0.826 38 H 0.180 0.820 39 H 0.179 0.821 40 H 0.188 0.812 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.247 0.753 44 H 0.068 0.932 45 H 0.052 0.948 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.399 26.698 4.381 28.641 hybrid contribution -0.570 0.119 -0.093 0.589 sum 8.829 26.817 4.287 28.557 Atomic orbital electron populations 1.20576 0.85928 1.04175 1.04081 1.21931 0.95923 0.86695 0.94459 1.19833 0.93512 0.92561 1.28379 1.16837 0.84149 0.83398 0.74826 1.90677 1.17680 1.84494 1.53931 1.48083 1.07460 1.05498 1.73682 1.22653 0.78441 0.99339 1.03334 1.22899 0.97197 0.91062 1.03926 1.21056 0.95287 0.89037 1.01260 0.89038 1.20862 0.95456 0.93820 0.91107 1.22243 1.01030 0.98974 0.96700 1.22023 0.95082 0.92124 1.00949 1.22504 1.00050 1.02225 0.94599 1.23156 0.95257 0.92728 0.96144 1.67420 1.15925 1.01550 1.37746 1.22074 0.97593 0.79170 1.00947 1.25092 0.97959 0.91571 0.97161 1.77099 0.98275 1.14382 1.25623 1.49129 1.03412 1.07709 1.51102 1.19383 0.95343 0.72294 0.98152 1.21415 1.47906 0.98449 0.91546 0.93115 1.25725 0.93840 0.95938 1.02263 1.69999 1.44832 1.07598 1.32931 0.85298 0.78459 0.78184 0.78502 1.19821 1.19732 1.19376 0.88983 0.88568 0.91027 0.88903 0.90060 0.87757 0.87377 0.82622 0.81976 0.82083 0.81185 0.92357 0.90789 0.75289 0.93189 0.94831 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.42 9.34 71.24 0.67 -2.75 16 2 C 0.15 6.20 7.01 42.14 0.30 6.49 16 3 C -0.33 -12.25 6.09 -20.15 -0.12 -12.37 16 4 C 0.62 21.38 7.85 86.67 0.68 22.06 16 5 O -0.59 -23.75 15.10 -4.02 -0.06 -23.81 16 6 N -0.61 -15.57 3.33 -816.12 -2.72 -18.28 16 7 C 0.08 1.38 4.98 86.73 0.43 1.81 16 8 C -0.11 -1.24 6.27 31.78 0.20 -1.04 16 9 C -0.05 -0.78 3.39 -10.22 -0.03 -0.81 16 10 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 11 C 0.13 2.09 5.89 42.55 0.25 2.34 16 12 C -0.17 -1.99 8.99 22.36 0.20 -1.78 16 13 C -0.08 -0.68 10.18 22.47 0.23 -0.45 16 14 C -0.17 -1.63 10.11 22.36 0.23 -1.41 16 15 C 0.08 1.16 11.18 84.67 0.95 2.11 16 16 N -0.52 -10.09 10.27 -183.88 -1.89 -11.98 16 17 C 0.13 2.77 6.35 86.78 0.55 3.32 16 18 C 0.07 2.33 10.45 85.65 0.89 3.22 16 19 N -0.33 -14.50 12.50 -56.28 -0.70 -15.20 16 20 N -0.34 -15.79 3.56 -336.70 -1.20 -16.99 16 21 C 0.27 13.91 5.78 85.63 0.50 14.40 16 22 C -0.56 -30.88 9.39 25.60 0.24 -30.64 16 23 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 24 C 0.02 1.29 5.46 84.65 0.46 1.76 16 25 N -0.92 -51.39 13.29 21.45 0.28 -51.11 16 26 Si 0.97 43.07 29.54 68.60 2.03 45.10 16 27 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 28 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 29 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 30 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 31 H 0.10 3.64 6.50 -2.38 -0.02 3.62 16 32 H 0.07 2.86 7.70 -2.38 -0.02 2.84 16 33 H 0.09 1.30 7.00 -2.39 -0.02 1.28 16 34 H 0.08 1.32 6.83 -2.39 -0.02 1.30 16 35 H 0.10 0.74 5.82 -2.38 -0.01 0.72 16 36 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.16 1.16 6.27 -2.91 -0.02 1.14 16 38 H 0.16 0.50 8.06 -2.91 -0.02 0.48 16 39 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 40 H 0.17 1.56 8.06 -2.91 -0.02 1.53 16 41 H 0.06 1.57 8.04 -2.39 -0.02 1.55 16 42 H 0.07 1.52 7.89 -2.39 -0.02 1.50 16 43 H 0.23 5.29 4.47 -2.91 -0.01 5.28 16 44 H 0.05 2.61 7.62 -2.39 -0.02 2.59 16 45 H 0.03 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -74.09 378.60 3.36 -70.73 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 1.01 Total: 15.30 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 6.61 Total: 6.26 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -6.22 Total: -113.57 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.06 Total: -23.81 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -74.09 3.36 -70.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890398329.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.725 kcal (2) G-P(sol) polarization free energy of solvation -74.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds