Wall clock time and date at job start Tue Mar 31 2020 23:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38048 * 126.29204 * 2 1 4 4 C 1.47427 * 126.41200 * 359.97438 * 3 2 1 5 5 O 1.21603 * 120.00121 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00123 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00440 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.46821 * 324.99486 * 7 6 4 9 9 C 1.50700 * 109.47431 * 204.99580 * 7 6 4 10 10 C 1.38650 * 120.78683 * 319.71569 * 9 7 6 11 11 C 1.38207 * 119.15931 * 179.79625 * 10 9 7 12 12 N 1.31875 * 120.76395 * 0.48639 * 11 10 9 13 13 C 1.31871 * 121.72625 * 359.74412 * 12 11 10 14 14 C 1.38203 * 120.76302 * 0.02562 * 13 12 11 15 15 C 1.53006 * 109.47370 * 84.99206 * 7 6 4 16 16 C 1.53000 * 117.49776 * 300.00429 * 15 7 6 17 17 C 1.52997 * 117.49537 * 8.62883 * 15 7 6 18 18 C 1.41287 * 107.17166 * 180.24588 * 3 2 1 19 19 N 1.30444 * 108.02239 * 359.61170 * 18 3 2 20 20 N 1.34261 * 126.29260 * 180.02562 * 2 1 3 21 21 C 1.46497 * 125.75433 * 359.97072 * 20 2 1 22 22 C 1.50697 * 109.47563 * 89.99109 * 21 20 2 23 23 H 1.07997 * 119.99721 * 0.02562 * 22 21 20 24 24 C 1.37877 * 120.00007 * 179.97438 * 22 21 20 25 25 N 1.31513 * 120.00291 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99942 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47156 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47218 * 120.00241 * 26 24 22 29 29 H 1.48501 * 109.47083 * 240.00049 * 26 24 22 30 30 H 1.09000 * 109.46753 * 89.98128 * 1 2 3 31 31 H 1.09000 * 109.47004 * 209.97286 * 1 2 3 32 32 H 1.08990 * 109.47080 * 329.97886 * 1 2 3 33 33 H 0.97000 * 119.99826 * 359.97438 * 6 4 3 34 34 H 1.07999 * 120.41756 * 0.02562 * 10 9 7 35 35 H 1.07997 * 119.61553 * 180.20758 * 11 10 9 36 36 H 1.07996 * 119.61478 * 179.97438 * 13 12 11 37 37 H 1.08002 * 120.42005 * 180.02562 * 14 13 12 38 38 H 1.09002 * 115.56020 * 154.31011 * 15 7 6 39 39 H 1.08990 * 117.49990 * 359.97438 * 16 15 7 40 40 H 1.09004 * 117.49237 * 214.97568 * 16 15 7 41 41 H 1.08999 * 117.49685 * 145.02116 * 17 15 7 42 42 H 1.08999 * 117.52022 * 359.97438 * 17 15 7 43 43 H 1.08004 * 125.98678 * 179.74291 * 18 3 2 44 44 H 1.09007 * 109.46892 * 209.99807 * 21 20 2 45 45 H 1.09003 * 109.46917 * 329.98599 * 21 20 2 46 46 H 0.96989 * 120.00356 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7877 -0.0015 6 7 2.7998 3.5107 -0.0010 7 6 2.3644 4.9095 -0.0021 8 1 1.4528 5.0057 -0.5919 9 6 3.4447 5.7715 -0.6028 10 6 4.7808 5.5383 -0.3149 11 6 5.7441 6.3470 -0.8878 12 7 5.4040 7.3358 -1.6912 13 6 4.1434 7.5896 -1.9834 14 6 3.1258 6.8204 -1.4517 15 6 2.0921 5.3601 1.4346 16 6 1.0199 4.6034 2.2211 17 6 2.4988 4.4092 2.5621 18 6 3.6590 0.6499 -0.0058 19 7 3.6341 -0.6543 -0.0006 20 7 2.3017 -1.0822 -0.0005 21 6 1.8502 -2.4758 -0.0005 22 6 1.6945 -2.9535 -1.4213 23 1 1.9107 -2.2859 -2.2421 24 6 1.2770 -4.2432 -1.6731 25 7 1.0142 -5.0563 -0.6735 26 14 1.0848 -4.8355 -3.4342 27 1 1.4407 -3.7367 -4.3677 28 1 1.9842 -5.9938 -3.6679 29 1 -0.3229 -5.2471 -3.6672 30 1 -0.3633 0.0003 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8897 0.5141 33 1 3.7461 3.2974 -0.0006 34 1 5.0653 4.7326 0.3455 35 1 6.7872 6.1698 -0.6713 36 1 3.9034 8.4086 -2.6453 37 1 2.0953 7.0329 -1.6951 38 1 2.1903 6.4300 1.6185 39 1 0.5081 3.7849 1.7150 40 1 0.4126 5.1756 2.9225 41 1 2.8643 4.8536 3.4879 42 1 2.9598 3.4625 2.2809 43 1 4.5449 1.2677 -0.0112 44 1 2.5851 -3.0958 0.5130 45 1 0.8918 -2.5472 0.5140 46 1 0.7209 -5.9637 -0.8506 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890917530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:48 Heat of formation + Delta-G solvation = 95.850214 kcal Electronic energy + Delta-G solvation = -28930.128181 eV Core-core repulsion = 25015.090876 eV Total energy + Delta-G solvation = -3915.037305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.07785 -40.58696 -39.34049 -37.04386 -34.53171 -33.92874 -32.66883 -32.01548 -31.48005 -31.12948 -28.20514 -26.96411 -26.46034 -23.90262 -23.49639 -22.84025 -22.31501 -22.21926 -20.47351 -19.74431 -19.11161 -17.70067 -16.99849 -16.77164 -16.36474 -16.27232 -15.90225 -15.33738 -15.16221 -14.76095 -14.51342 -14.42680 -14.02161 -13.92437 -13.88383 -13.19727 -13.07509 -12.95232 -12.61156 -12.47139 -12.16541 -12.11511 -11.91751 -11.81641 -11.53002 -11.48821 -11.12724 -10.93535 -10.60647 -10.39991 -10.25478 -10.18211 -9.94917 -9.90539 -9.75176 -9.47489 -9.44117 -9.01541 -8.74532 -8.64325 -7.98412 -6.36850 -4.44732 0.82958 0.89240 2.10373 2.72863 3.03974 3.14822 3.23088 3.28077 3.42714 3.51455 3.77771 3.81867 4.13268 4.18171 4.21743 4.50630 4.70650 4.79233 4.85882 4.90007 4.95581 5.02050 5.02617 5.16034 5.25161 5.29954 5.37390 5.47553 5.55834 5.65198 5.66805 5.70349 5.82282 5.85922 5.97988 6.07560 6.07896 6.32166 6.37456 6.38972 6.48342 6.53670 6.74726 6.86795 7.10136 7.52494 7.60410 7.66993 7.73123 7.74388 8.31789 8.49671 8.61103 9.22498 10.71452 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.002593 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.829020 B =10796.668658 C =11530.478514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.168 3.832 3 C -0.335 4.335 4 C 0.608 3.392 5 O -0.548 6.548 6 N -0.728 5.728 7 C 0.219 3.781 8 H 0.104 0.896 9 C -0.039 4.039 10 C -0.163 4.163 11 C 0.101 3.899 12 N -0.488 5.488 13 C 0.100 3.900 14 C -0.162 4.162 15 C -0.169 4.169 16 C -0.178 4.178 17 C -0.174 4.174 18 C 0.057 3.943 19 N -0.294 5.294 20 N -0.313 5.313 21 C 0.251 3.749 22 C -0.540 4.540 23 H 0.066 0.934 24 C 0.068 3.932 25 N -0.889 5.889 26 Si 0.908 3.092 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.279 1.279 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.398 0.602 34 H 0.135 0.865 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.138 0.862 38 H 0.106 0.894 39 H 0.123 0.877 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.174 0.826 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.669 22.251 3.542 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.030 3.970 3 C -0.350 4.350 4 C 0.400 3.600 5 O -0.428 6.428 6 N -0.381 5.381 7 C 0.114 3.886 8 H 0.122 0.878 9 C -0.047 4.047 10 C -0.183 4.183 11 C -0.055 4.055 12 N -0.197 5.197 13 C -0.057 4.057 14 C -0.182 4.182 15 C -0.188 4.188 16 C -0.215 4.215 17 C -0.211 4.211 18 C -0.130 4.130 19 N -0.113 5.113 20 N -0.090 5.090 21 C 0.133 3.867 22 C -0.578 4.578 23 H 0.084 0.916 24 C -0.136 4.136 25 N -0.527 5.527 26 Si 0.734 3.266 27 H -0.195 1.195 28 H -0.205 1.205 29 H -0.205 1.205 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.233 0.767 34 H 0.153 0.847 35 H 0.174 0.826 36 H 0.174 0.826 37 H 0.155 0.845 38 H 0.124 0.876 39 H 0.141 0.859 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.117 0.883 43 H 0.191 0.809 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.102 21.487 3.229 22.112 hybrid contribution -0.561 -0.336 -0.520 0.835 sum 3.542 21.152 2.709 21.616 Atomic orbital electron populations 1.20576 0.86768 1.03816 1.03958 1.21480 0.94961 0.86504 0.94010 1.19615 0.93130 0.92333 1.29921 1.17279 0.84989 0.83811 0.73936 1.90635 1.16604 1.84228 1.51300 1.45838 1.09967 1.04604 1.77685 1.19190 0.95328 0.79654 0.94408 0.87818 1.20330 0.94572 0.95192 0.94634 1.21969 0.93113 1.01604 1.01614 1.22776 1.00061 0.90422 0.92271 1.67688 1.20650 1.17737 1.13606 1.22765 0.87800 0.98086 0.97015 1.22044 1.01522 0.96431 0.98197 1.22620 1.06766 0.97720 0.91712 1.23375 0.91770 1.03896 1.02451 1.22944 0.98914 1.01092 0.98132 1.23698 0.96283 0.92680 1.00364 1.77150 0.98640 1.12218 1.23339 1.49387 1.02465 1.08349 1.48749 1.19870 0.96426 0.70861 0.99493 1.21277 1.47411 0.98159 0.90980 0.91616 1.24922 0.94419 0.95989 0.98317 1.69914 1.44521 1.07147 1.31081 0.86274 0.77994 0.78868 0.83422 1.19522 1.20543 1.20516 0.89810 0.90858 0.88778 0.76651 0.84723 0.82610 0.82645 0.84461 0.87616 0.85885 0.89467 0.89367 0.88334 0.80938 0.92496 0.92528 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.61 9.57 36.01 0.34 -1.27 16 2 C 0.17 3.27 7.01 -81.60 -0.57 2.70 16 3 C -0.33 -5.74 6.13 -105.07 -0.64 -6.38 16 4 C 0.61 9.08 6.64 -12.52 -0.08 9.00 16 5 O -0.55 -9.19 11.87 5.27 0.06 -9.13 16 6 N -0.73 -8.10 3.57 -56.01 -0.20 -8.29 16 7 C 0.22 2.18 2.67 -69.08 -0.18 2.00 16 8 H 0.10 1.17 7.48 -51.93 -0.39 0.79 16 9 C -0.04 -0.34 4.96 -104.32 -0.52 -0.86 16 10 C -0.16 -1.31 9.15 -39.44 -0.36 -1.67 16 11 C 0.10 0.85 11.18 -17.54 -0.20 0.66 16 12 N -0.49 -4.85 10.36 -13.25 -0.14 -4.98 16 13 C 0.10 0.84 11.18 -17.55 -0.20 0.64 16 14 C -0.16 -1.31 9.78 -39.44 -0.39 -1.69 16 15 C -0.17 -1.61 5.69 -90.62 -0.52 -2.13 16 16 C -0.18 -1.98 9.82 -26.73 -0.26 -2.25 16 17 C -0.17 -1.75 9.73 -26.73 -0.26 -2.01 16 18 C 0.06 0.94 11.50 -16.98 -0.20 0.75 16 19 N -0.29 -6.12 12.50 30.86 0.39 -5.73 16 20 N -0.31 -6.87 3.56 -57.77 -0.21 -7.07 16 21 C 0.25 6.12 5.97 -5.20 -0.03 6.09 16 22 C -0.54 -14.36 9.39 -34.44 -0.32 -14.68 16 23 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 24 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 25 N -0.89 -24.33 13.29 55.43 0.74 -23.59 16 26 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 29 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.07 1.25 7.05 -51.93 -0.37 0.88 16 32 H 0.09 1.52 6.50 -51.93 -0.34 1.18 16 33 H 0.40 3.71 5.92 -40.82 -0.24 3.47 16 34 H 0.13 0.85 7.03 -52.49 -0.37 0.48 16 35 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 38 H 0.11 0.91 8.11 -51.93 -0.42 0.49 16 39 H 0.12 1.71 5.01 -51.93 -0.26 1.45 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 1.08 6.67 -51.93 -0.35 0.74 16 43 H 0.17 2.03 7.50 -52.48 -0.39 1.63 16 44 H 0.06 1.48 8.14 -51.92 -0.42 1.06 16 45 H 0.06 1.37 7.02 -51.93 -0.36 1.01 16 46 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 382.99 15.07 5.77 5.77 Total: -1.00 -30.82 382.99 -9.08 -39.90 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.99 Total: 6.92 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -4.48 Total: -9.40 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.58 Total: -49.68 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.06 Total: -9.13 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.82 -9.08 -39.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890917530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.754 kcal (2) G-P(sol) polarization free energy of solvation -30.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds