Wall clock time and date at job start Tue Mar 31 2020 23:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38048 * 126.29204 * 2 1 4 4 C 1.47427 * 126.41200 * 359.97438 * 3 2 1 5 5 O 1.21603 * 120.00121 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00123 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00440 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.46821 * 324.99486 * 7 6 4 9 9 C 1.50700 * 109.47431 * 204.99580 * 7 6 4 10 10 C 1.38650 * 120.78683 * 319.71569 * 9 7 6 11 11 C 1.38207 * 119.15931 * 179.79625 * 10 9 7 12 12 N 1.31875 * 120.76395 * 0.48639 * 11 10 9 13 13 C 1.31871 * 121.72625 * 359.74412 * 12 11 10 14 14 C 1.38203 * 120.76302 * 0.02562 * 13 12 11 15 15 C 1.53006 * 109.47370 * 84.99206 * 7 6 4 16 16 C 1.53000 * 117.49776 * 300.00429 * 15 7 6 17 17 C 1.52997 * 117.49537 * 8.62883 * 15 7 6 18 18 C 1.41287 * 107.17166 * 180.24588 * 3 2 1 19 19 N 1.30444 * 108.02239 * 359.61170 * 18 3 2 20 20 N 1.34261 * 126.29260 * 180.02562 * 2 1 3 21 21 C 1.46497 * 125.75433 * 359.97072 * 20 2 1 22 22 C 1.50697 * 109.47563 * 89.99109 * 21 20 2 23 23 H 1.07997 * 119.99721 * 0.02562 * 22 21 20 24 24 C 1.37877 * 120.00007 * 179.97438 * 22 21 20 25 25 N 1.31513 * 120.00291 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99942 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47156 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47218 * 120.00241 * 26 24 22 29 29 H 1.48501 * 109.47083 * 240.00049 * 26 24 22 30 30 H 1.09000 * 109.46753 * 89.98128 * 1 2 3 31 31 H 1.09000 * 109.47004 * 209.97286 * 1 2 3 32 32 H 1.08990 * 109.47080 * 329.97886 * 1 2 3 33 33 H 0.97000 * 119.99826 * 359.97438 * 6 4 3 34 34 H 1.07999 * 120.41756 * 0.02562 * 10 9 7 35 35 H 1.07997 * 119.61553 * 180.20758 * 11 10 9 36 36 H 1.07996 * 119.61478 * 179.97438 * 13 12 11 37 37 H 1.08002 * 120.42005 * 180.02562 * 14 13 12 38 38 H 1.09002 * 115.56020 * 154.31011 * 15 7 6 39 39 H 1.08990 * 117.49990 * 359.97438 * 16 15 7 40 40 H 1.09004 * 117.49237 * 214.97568 * 16 15 7 41 41 H 1.08999 * 117.49685 * 145.02116 * 17 15 7 42 42 H 1.08999 * 117.52022 * 359.97438 * 17 15 7 43 43 H 1.08004 * 125.98678 * 179.74291 * 18 3 2 44 44 H 1.09007 * 109.46892 * 209.99807 * 21 20 2 45 45 H 1.09003 * 109.46917 * 329.98599 * 21 20 2 46 46 H 0.96989 * 120.00356 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7877 -0.0015 6 7 2.7998 3.5107 -0.0010 7 6 2.3644 4.9095 -0.0021 8 1 1.4528 5.0057 -0.5919 9 6 3.4447 5.7715 -0.6028 10 6 4.7808 5.5383 -0.3149 11 6 5.7441 6.3470 -0.8878 12 7 5.4040 7.3358 -1.6912 13 6 4.1434 7.5896 -1.9834 14 6 3.1258 6.8204 -1.4517 15 6 2.0921 5.3601 1.4346 16 6 1.0199 4.6034 2.2211 17 6 2.4988 4.4092 2.5621 18 6 3.6590 0.6499 -0.0058 19 7 3.6341 -0.6543 -0.0006 20 7 2.3017 -1.0822 -0.0005 21 6 1.8502 -2.4758 -0.0005 22 6 1.6945 -2.9535 -1.4213 23 1 1.9107 -2.2859 -2.2421 24 6 1.2770 -4.2432 -1.6731 25 7 1.0142 -5.0563 -0.6735 26 14 1.0848 -4.8355 -3.4342 27 1 1.4407 -3.7367 -4.3677 28 1 1.9842 -5.9938 -3.6679 29 1 -0.3229 -5.2471 -3.6672 30 1 -0.3633 0.0003 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8897 0.5141 33 1 3.7461 3.2974 -0.0006 34 1 5.0653 4.7326 0.3455 35 1 6.7872 6.1698 -0.6713 36 1 3.9034 8.4086 -2.6453 37 1 2.0953 7.0329 -1.6951 38 1 2.1903 6.4300 1.6185 39 1 0.5081 3.7849 1.7150 40 1 0.4126 5.1756 2.9225 41 1 2.8643 4.8536 3.4879 42 1 2.9598 3.4625 2.2809 43 1 4.5449 1.2677 -0.0112 44 1 2.5851 -3.0958 0.5130 45 1 0.8918 -2.5472 0.5140 46 1 0.7209 -5.9637 -0.8506 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890917530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:47 Heat of formation + Delta-G solvation = 78.441760 kcal Electronic energy + Delta-G solvation = -28930.883068 eV Core-core repulsion = 25015.090876 eV Total energy + Delta-G solvation = -3915.792192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.37978 -41.48388 -40.30977 -38.04120 -35.84292 -35.36468 -33.97122 -33.27954 -32.66186 -32.07504 -29.53046 -28.51169 -27.67139 -25.36770 -24.51893 -23.57533 -23.43996 -23.11229 -21.64131 -20.79688 -20.51624 -18.89016 -18.73807 -17.88511 -17.23631 -17.22708 -16.71255 -16.53722 -16.32186 -16.08588 -15.99294 -15.55106 -15.23145 -14.79206 -14.62067 -14.47448 -14.29844 -14.06678 -14.00242 -13.75800 -13.64597 -13.52502 -13.08439 -13.01685 -12.90734 -12.71844 -12.51957 -12.34085 -12.31016 -11.84073 -11.73047 -11.38229 -11.01528 -10.77868 -10.76153 -10.54273 -10.41899 -10.26859 -10.05331 -10.00062 -9.45403 -8.39041 -6.55240 0.24169 0.24368 0.68602 1.32307 1.35341 1.38396 1.48833 1.65159 2.24902 2.32176 2.53207 2.86841 2.93244 2.98531 3.39720 3.65116 3.73998 3.74346 3.89937 3.95208 4.10776 4.13950 4.19009 4.21958 4.24129 4.28227 4.44556 4.51319 4.60878 4.67773 4.74487 4.80016 4.87394 4.89652 4.93382 5.00997 5.05661 5.08380 5.17436 5.24672 5.32409 5.43414 5.48472 5.56669 5.67938 5.74067 5.79696 6.04448 6.54200 6.57634 6.84768 7.06992 7.16069 7.34741 8.69082 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.002593 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.829020 B =10796.668658 C =11530.478514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.147 3.853 3 C -0.330 4.330 4 C 0.612 3.388 5 O -0.567 6.567 6 N -0.710 5.710 7 C 0.224 3.776 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.162 4.162 11 C 0.093 3.907 12 N -0.513 5.513 13 C 0.092 3.908 14 C -0.164 4.164 15 C -0.154 4.154 16 C -0.195 4.195 17 C -0.169 4.169 18 C 0.077 3.923 19 N -0.336 5.336 20 N -0.338 5.338 21 C 0.267 3.733 22 C -0.554 4.554 23 H 0.051 0.949 24 C 0.024 3.976 25 N -0.916 5.916 26 Si 0.971 3.029 27 H -0.273 1.273 28 H -0.273 1.273 29 H -0.268 1.268 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.409 0.591 34 H 0.153 0.847 35 H 0.176 0.824 36 H 0.176 0.824 37 H 0.152 0.848 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.224 0.776 44 H 0.031 0.969 45 H 0.051 0.949 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.605 24.288 3.029 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.011 3.989 3 C -0.345 4.345 4 C 0.402 3.598 5 O -0.448 6.448 6 N -0.363 5.363 7 C 0.119 3.881 8 H 0.109 0.891 9 C -0.056 4.056 10 C -0.182 4.182 11 C -0.064 4.064 12 N -0.223 5.223 13 C -0.065 4.065 14 C -0.184 4.184 15 C -0.174 4.174 16 C -0.232 4.232 17 C -0.206 4.206 18 C -0.109 4.109 19 N -0.155 5.155 20 N -0.115 5.115 21 C 0.149 3.851 22 C -0.593 4.593 23 H 0.069 0.931 24 C -0.177 4.177 25 N -0.554 5.554 26 Si 0.795 3.205 27 H -0.197 1.197 28 H -0.199 1.199 29 H -0.193 1.193 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.247 0.753 34 H 0.170 0.830 35 H 0.193 0.807 36 H 0.193 0.807 37 H 0.170 0.830 38 H 0.139 0.861 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.108 0.892 43 H 0.240 0.760 44 H 0.049 0.951 45 H 0.068 0.932 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.057 23.559 2.724 24.249 hybrid contribution -0.816 -0.816 -0.323 1.199 sum 4.241 22.743 2.401 23.259 Atomic orbital electron populations 1.20555 0.85904 1.04093 1.03873 1.21966 0.95897 0.86720 0.94307 1.19916 0.93123 0.93052 1.28410 1.16994 0.85115 0.83532 0.74190 1.90641 1.17591 1.84345 1.52182 1.45646 1.09972 1.04568 1.76091 1.19170 0.95385 0.78795 0.94726 0.89090 1.20252 0.94502 0.95474 0.95348 1.22144 0.92617 1.01876 1.01524 1.23153 1.01229 0.90074 0.91909 1.67711 1.21510 1.18619 1.14436 1.23131 0.87444 0.98658 0.97222 1.22238 1.02349 0.96065 0.97707 1.22619 1.05244 0.98370 0.91137 1.23295 0.92495 1.03898 1.03477 1.22964 0.97778 1.00875 0.98963 1.24475 0.97679 0.91638 0.97157 1.77100 0.98330 1.14453 1.25643 1.49099 1.03407 1.07762 1.51267 1.19357 0.95272 0.72425 0.98086 1.21414 1.47818 0.98451 0.91574 0.93069 1.25715 0.93847 0.95963 1.02199 1.69993 1.44907 1.07589 1.32958 0.85312 0.78459 0.78190 0.78564 1.19749 1.19871 1.19342 0.90004 0.91249 0.87714 0.75306 0.82970 0.80668 0.80701 0.83004 0.86063 0.88627 0.88458 0.87827 0.89226 0.75985 0.95092 0.93169 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.05 9.57 71.24 0.68 -2.37 16 2 C 0.15 5.81 7.01 42.14 0.30 6.10 16 3 C -0.33 -11.00 6.13 -20.15 -0.12 -11.12 16 4 C 0.61 17.44 6.64 86.66 0.58 18.02 16 5 O -0.57 -18.67 11.87 -4.04 -0.05 -18.72 16 6 N -0.71 -14.14 3.57 -449.38 -1.60 -15.74 16 7 C 0.22 3.96 2.67 44.25 0.12 4.08 16 8 H 0.09 1.92 7.48 -2.39 -0.02 1.90 16 9 C -0.05 -0.70 4.96 -19.67 -0.10 -0.80 16 10 C -0.16 -2.10 9.15 22.36 0.20 -1.90 16 11 C 0.09 1.32 11.18 84.68 0.95 2.27 16 12 N -0.51 -9.12 10.36 -195.84 -2.03 -11.15 16 13 C 0.09 1.34 11.18 84.68 0.95 2.28 16 14 C -0.16 -2.26 9.78 22.36 0.22 -2.04 16 15 C -0.15 -2.59 5.69 -10.79 -0.06 -2.65 16 16 C -0.19 -4.08 9.82 30.60 0.30 -3.78 16 17 C -0.17 -3.00 9.73 30.60 0.30 -2.70 16 18 C 0.08 2.43 11.50 85.65 0.99 3.42 16 19 N -0.34 -14.00 12.50 -56.28 -0.70 -14.70 16 20 N -0.34 -15.26 3.56 -336.69 -1.20 -16.46 16 21 C 0.27 13.64 5.97 85.63 0.51 14.15 16 22 C -0.55 -30.32 9.39 25.60 0.24 -30.08 16 23 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 24 C 0.02 1.30 5.46 84.65 0.46 1.76 16 25 N -0.92 -50.94 13.29 21.45 0.28 -50.65 16 26 Si 0.97 42.45 29.54 68.60 2.03 44.47 16 27 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 29 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 30 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.07 2.46 7.05 -2.39 -0.02 2.44 16 32 H 0.10 3.43 6.50 -2.39 -0.02 3.42 16 33 H 0.41 6.27 5.92 -92.71 -0.55 5.72 16 34 H 0.15 1.35 7.03 -2.91 -0.02 1.33 16 35 H 0.18 1.63 8.06 -2.91 -0.02 1.60 16 36 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.12 1.72 8.11 -2.39 -0.02 1.70 16 39 H 0.10 2.62 5.01 -2.39 -0.01 2.60 16 40 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.09 1.76 6.67 -2.39 -0.02 1.75 16 43 H 0.22 4.37 7.50 -2.91 -0.02 4.34 16 44 H 0.03 1.70 8.14 -2.38 -0.02 1.69 16 45 H 0.05 2.57 7.02 -2.39 -0.02 2.55 16 46 H 0.27 14.21 8.31 -92.72 -0.77 13.44 16 Total: -1.00 -67.97 382.99 3.70 -64.27 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.47 Total: 24.06 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 6.50 Total: -5.37 kcal Atomic # 7 Polarization: -103.46 SS G_CDS: -5.25 Total: -108.71 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.05 Total: -18.72 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -67.97 3.70 -64.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890917530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.708 kcal (2) G-P(sol) polarization free energy of solvation -67.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds