Wall clock time and date at job start Tue Mar 31 2020 23:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31743 * 119.04521 * 2 1 4 4 C 1.33182 * 120.88154 * 179.97438 * 3 2 1 5 5 N 1.38730 * 120.48605 * 180.02562 * 4 3 2 6 6 C 1.39784 * 119.99829 * 187.53860 * 5 4 3 7 7 C 1.38908 * 120.07191 * 221.50825 * 6 5 4 8 8 C 1.38100 * 119.92670 * 179.72272 * 7 6 5 9 9 C 1.38294 * 120.07356 * 0.54599 * 8 7 6 10 10 C 1.38286 * 120.14512 * 359.72764 * 9 8 7 11 11 C 1.38108 * 120.07687 * 359.97438 * 10 9 8 12 12 C 1.39167 * 119.02498 * 359.73053 * 4 3 2 13 13 C 1.39142 * 118.26960 * 0.52915 * 12 4 3 14 14 N 1.38626 * 120.48639 * 179.73812 * 13 12 4 15 15 C 1.47437 * 111.00225 * 59.60162 * 14 13 12 16 16 C 1.54320 * 107.23767 * 123.25698 * 15 14 13 17 17 C 1.55140 * 103.01749 * 22.28402 * 16 15 14 18 18 O 1.42900 * 110.98907 * 82.47579 * 17 16 15 19 19 C 1.50693 * 110.99080 * 206.25864 * 17 16 15 20 20 H 1.08004 * 120.00244 * 118.54717 * 19 17 16 21 21 C 1.37880 * 120.00083 * 298.54465 * 19 17 16 22 22 N 1.31519 * 119.99746 * 0.02562 * 21 19 17 23 23 Si 1.86801 * 120.00430 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47066 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47259 * 120.00062 * 23 21 19 26 26 H 1.48497 * 109.47187 * 240.00249 * 23 21 19 27 27 C 1.47848 * 110.99817 * 180.44444 * 14 13 12 28 28 N 1.31736 * 119.04155 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47591 * 270.02403 * 1 2 3 30 30 H 1.09007 * 109.46890 * 30.02318 * 1 2 3 31 31 H 1.08999 * 109.46848 * 150.01617 * 1 2 3 32 32 H 0.97000 * 120.00047 * 7.53624 * 5 4 3 33 33 H 1.08001 * 120.03654 * 359.96722 * 7 6 5 34 34 H 1.08001 * 119.96416 * 180.25199 * 8 7 6 35 35 H 1.07994 * 119.92594 * 179.70030 * 9 8 7 36 36 H 1.08000 * 119.96105 * 179.97438 * 10 9 8 37 37 H 1.07991 * 120.03901 * 180.02562 * 11 10 9 38 38 H 1.08000 * 120.86562 * 180.27513 * 12 4 3 39 39 H 1.09005 * 109.88624 * 242.66713 * 15 14 13 40 40 H 1.09008 * 109.88789 * 3.84580 * 15 14 13 41 41 H 1.08995 * 110.70664 * 140.66991 * 16 15 14 42 42 H 1.08996 * 110.70409 * 263.72861 * 16 15 14 43 43 H 0.96698 * 113.99948 * 61.45990 * 18 17 16 44 44 H 0.96994 * 120.00020 * 180.02562 * 22 21 19 45 45 H 1.08994 * 110.37385 * 332.46391 * 27 14 13 46 46 H 1.08995 * 110.37776 * 94.80671 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1466 1.1517 0.0000 4 6 3.4778 1.1944 0.0005 5 7 4.1429 2.4119 0.0010 6 6 5.5313 2.4498 -0.1572 7 6 6.2962 3.3165 0.6130 8 6 7.6681 3.3474 0.4582 9 6 8.2795 2.5249 -0.4704 10 6 7.5204 1.6650 -1.2428 11 6 6.1485 1.6246 -1.0887 12 6 4.1916 -0.0002 0.0068 13 6 3.4778 -1.1945 0.0009 14 7 4.1424 -2.4111 0.0013 15 6 5.0015 -2.5435 1.1922 16 6 4.5665 -3.8275 1.9294 17 6 3.8698 -4.6515 0.8148 18 8 4.8285 -5.3619 0.0284 19 6 2.8493 -5.5943 1.3982 20 1 1.8081 -5.4980 1.1277 21 6 3.2446 -6.5800 2.2775 22 7 4.5124 -6.6971 2.6074 23 14 1.9798 -7.7493 3.0003 24 1 0.6335 -7.4089 2.4741 25 1 2.3216 -9.1439 2.6219 26 1 1.9785 -7.6240 4.4800 27 6 3.1851 -3.5377 -0.0162 28 7 2.1465 -1.1517 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5136 32 1 3.6446 3.2368 0.1112 33 1 5.8189 3.9626 1.3349 34 1 8.2639 4.0181 1.0596 35 1 9.3521 2.5545 -0.5928 36 1 8.0008 1.0243 -1.9673 37 1 5.5563 0.9526 -1.6919 38 1 5.2716 -0.0003 0.0118 39 1 6.0453 -2.6255 0.8890 40 1 4.8690 -1.6791 1.8430 41 1 5.4336 -4.3611 2.3184 42 1 3.8680 -3.5928 2.7326 43 1 5.3500 -6.0038 0.5293 44 1 4.7906 -7.3907 3.2256 45 1 2.2437 -3.2430 0.4473 46 1 3.0162 -3.8764 -1.0383 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894350733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:40 Heat of formation + Delta-G solvation = 52.276972 kcal Electronic energy + Delta-G solvation = -29463.763846 eV Core-core repulsion = 25546.837063 eV Total energy + Delta-G solvation = -3916.926783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.16842 -39.64576 -38.45353 -36.23244 -35.11926 -32.39277 -32.16550 -32.12740 -31.13340 -29.25836 -29.00809 -28.62749 -27.67822 -24.94876 -23.38419 -23.09009 -22.42386 -21.42833 -20.31661 -19.65977 -18.16791 -17.72252 -17.22047 -16.59159 -16.13585 -15.56429 -15.35271 -15.07580 -14.86842 -14.67729 -14.53905 -14.23406 -13.93930 -13.61652 -13.61121 -13.08846 -12.72762 -12.67962 -12.65897 -12.28026 -12.20724 -11.78860 -11.75994 -11.48671 -11.31877 -11.15661 -11.05484 -10.86830 -10.60823 -10.46068 -10.41108 -10.10410 -9.75657 -9.27332 -9.23967 -9.15168 -8.97122 -8.63235 -8.15807 -8.01870 -7.78615 -6.23475 -4.30612 0.95633 1.16320 1.31957 1.69055 2.76019 3.21194 3.30036 3.35016 3.55776 3.87332 4.15671 4.27636 4.33683 4.65912 4.71185 4.76477 4.95057 5.03253 5.15142 5.20228 5.31618 5.41083 5.48959 5.52717 5.66280 5.66872 5.73091 5.79455 5.83041 5.91479 5.93024 6.09186 6.11072 6.17823 6.28474 6.33788 6.44597 6.55699 6.60414 6.84093 6.91872 6.95958 7.07096 7.25797 7.37368 7.42164 7.63553 7.68032 7.79641 8.11714 8.53548 8.72526 9.37042 9.46685 10.83988 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.003176 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.053669 B = 8813.481413 C =10230.073435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.375 3.625 3 N -0.596 5.596 4 C 0.438 3.562 5 N -0.659 5.659 6 C 0.166 3.834 7 C -0.147 4.147 8 C -0.097 4.097 9 C -0.139 4.139 10 C -0.093 4.093 11 C -0.143 4.143 12 C -0.311 4.311 13 C 0.391 3.609 14 N -0.465 5.465 15 C 0.054 3.946 16 C -0.143 4.143 17 C 0.250 3.750 18 O -0.580 6.580 19 C -0.531 4.531 20 H 0.064 0.936 21 C 0.071 3.929 22 N -0.896 5.896 23 Si 0.900 3.100 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.283 1.283 27 C 0.061 3.939 28 N -0.576 5.576 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.414 0.586 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.147 0.853 39 H 0.077 0.923 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.378 0.622 44 H 0.266 0.734 45 H 0.089 0.911 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.334 19.130 -3.445 19.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.105 3.895 3 N -0.322 5.322 4 C 0.199 3.801 5 N -0.286 5.286 6 C 0.070 3.930 7 C -0.168 4.168 8 C -0.115 4.115 9 C -0.158 4.158 10 C -0.111 4.111 11 C -0.164 4.164 12 C -0.340 4.340 13 C 0.153 3.847 14 N -0.180 5.180 15 C -0.071 4.071 16 C -0.182 4.182 17 C 0.210 3.790 18 O -0.388 6.388 19 C -0.569 4.569 20 H 0.083 0.917 21 C -0.131 4.131 22 N -0.536 5.536 23 Si 0.728 3.272 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.209 1.209 27 C -0.064 4.064 28 N -0.301 5.301 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.252 0.748 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.165 0.835 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.227 0.773 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.707 19.228 -4.264 19.880 hybrid contribution 0.045 -0.577 1.525 1.631 sum 2.751 18.651 -2.739 19.051 Atomic orbital electron populations 1.20534 0.85925 1.03844 1.03732 1.22712 0.97313 0.82058 0.87444 1.67656 1.07073 1.31416 1.26059 1.18118 0.88283 0.85538 0.88148 1.41671 1.04198 1.06100 1.76600 1.17604 0.82100 0.98165 0.95115 1.20953 0.93988 1.02131 0.99750 1.20968 0.93789 0.98758 0.98003 1.21153 1.00077 0.97205 0.97382 1.21062 0.93093 0.97988 0.98987 1.21263 0.95606 1.01500 0.98030 1.21772 1.02361 0.90982 1.18932 1.20144 0.87644 0.91263 0.85634 1.60418 1.20010 1.00309 1.37311 1.22972 0.96810 0.99496 0.87788 1.23307 1.01959 0.93667 0.99224 1.19593 0.86290 0.87912 0.85229 1.86154 1.54390 1.57520 1.40708 1.21529 0.94522 1.14859 1.26026 0.91739 1.25000 0.95627 0.97085 0.95419 1.69735 1.14924 1.33828 1.35087 0.86398 0.81629 0.80542 0.78629 1.19553 1.20801 1.20947 1.23185 0.94164 0.87343 1.01749 1.68269 1.08947 1.29860 1.23002 0.89757 0.90022 0.89461 0.74803 0.85716 0.85675 0.85869 0.85433 0.85158 0.83518 0.90436 0.93426 0.89651 0.92080 0.77273 0.92416 0.89256 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.32 36.01 0.37 -0.61 16 2 C 0.37 6.11 7.64 -157.29 -1.20 4.90 16 3 N -0.60 -9.37 10.36 -10.00 -0.10 -9.47 16 4 C 0.44 6.66 7.47 -154.60 -1.15 5.50 16 5 N -0.66 -7.88 5.47 -9.89 -0.05 -7.93 16 6 C 0.17 1.87 5.88 -83.74 -0.49 1.38 16 7 C -0.15 -1.39 9.97 -39.38 -0.39 -1.78 16 8 C -0.10 -0.82 10.04 -39.61 -0.40 -1.22 16 9 C -0.14 -1.22 10.04 -39.54 -0.40 -1.61 16 10 C -0.09 -0.92 10.04 -39.61 -0.40 -1.32 16 11 C -0.14 -1.66 7.39 -39.38 -0.29 -1.96 16 12 C -0.31 -5.16 7.09 -38.90 -0.28 -5.44 16 13 C 0.39 7.46 6.15 -154.70 -0.95 6.51 16 14 N -0.47 -9.55 5.20 -169.88 -0.88 -10.43 16 15 C 0.05 1.07 6.48 -2.84 -0.02 1.05 16 16 C -0.14 -3.25 5.37 -24.91 -0.13 -3.38 16 17 C 0.25 6.19 0.87 -89.63 -0.08 6.11 16 18 O -0.58 -14.93 13.16 -35.23 -0.46 -15.40 16 19 C -0.53 -14.16 8.27 -34.44 -0.28 -14.45 16 20 H 0.06 1.73 7.79 -52.48 -0.41 1.32 16 21 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 22 N -0.90 -23.52 10.75 55.43 0.60 -22.92 16 23 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 C 0.06 1.39 5.56 -2.29 -0.01 1.37 16 28 N -0.58 -10.85 8.21 -10.03 -0.08 -10.94 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.41 4.13 8.95 -40.82 -0.37 3.76 16 33 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.13 1.67 6.67 -52.49 -0.35 1.32 16 38 H 0.15 2.33 5.46 -52.49 -0.29 2.04 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.05 0.88 7.16 -51.92 -0.37 0.51 16 41 H 0.08 2.02 7.54 -51.93 -0.39 1.63 16 42 H 0.06 1.44 8.04 -51.93 -0.42 1.03 16 43 H 0.38 9.72 7.56 45.56 0.34 10.07 16 44 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 45 H 0.09 2.06 6.47 -51.93 -0.34 1.73 16 46 H 0.07 1.74 8.14 -51.93 -0.42 1.31 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -29.30 374.77 -12.09 -41.39 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -5.52 Total: 17.67 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -6.20 Total: -3.16 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -0.53 Total: -61.70 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.46 Total: -15.40 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.30 -12.09 -41.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894350733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.666 kcal (2) G-P(sol) polarization free energy of solvation -29.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds