Wall clock time and date at job start Tue Mar 31 2020 23:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31743 * 119.04521 * 2 1 4 4 C 1.33182 * 120.88154 * 179.97438 * 3 2 1 5 5 N 1.38730 * 120.48605 * 180.02562 * 4 3 2 6 6 C 1.39784 * 119.99829 * 187.53860 * 5 4 3 7 7 C 1.38908 * 120.07191 * 221.50825 * 6 5 4 8 8 C 1.38100 * 119.92670 * 179.72272 * 7 6 5 9 9 C 1.38294 * 120.07356 * 0.54599 * 8 7 6 10 10 C 1.38286 * 120.14512 * 359.72764 * 9 8 7 11 11 C 1.38108 * 120.07687 * 359.97438 * 10 9 8 12 12 C 1.39167 * 119.02498 * 359.73053 * 4 3 2 13 13 C 1.39142 * 118.26960 * 0.52915 * 12 4 3 14 14 N 1.38626 * 120.48639 * 179.73812 * 13 12 4 15 15 C 1.47437 * 111.00225 * 59.60162 * 14 13 12 16 16 C 1.54320 * 107.23767 * 123.25698 * 15 14 13 17 17 C 1.55140 * 103.01749 * 22.28402 * 16 15 14 18 18 O 1.42900 * 110.98907 * 82.47579 * 17 16 15 19 19 C 1.50693 * 110.99080 * 206.25864 * 17 16 15 20 20 H 1.08004 * 120.00244 * 118.54717 * 19 17 16 21 21 C 1.37880 * 120.00083 * 298.54465 * 19 17 16 22 22 N 1.31519 * 119.99746 * 0.02562 * 21 19 17 23 23 Si 1.86801 * 120.00430 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47066 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47259 * 120.00062 * 23 21 19 26 26 H 1.48497 * 109.47187 * 240.00249 * 23 21 19 27 27 C 1.47848 * 110.99817 * 180.44444 * 14 13 12 28 28 N 1.31736 * 119.04155 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47591 * 270.02403 * 1 2 3 30 30 H 1.09007 * 109.46890 * 30.02318 * 1 2 3 31 31 H 1.08999 * 109.46848 * 150.01617 * 1 2 3 32 32 H 0.97000 * 120.00047 * 7.53624 * 5 4 3 33 33 H 1.08001 * 120.03654 * 359.96722 * 7 6 5 34 34 H 1.08001 * 119.96416 * 180.25199 * 8 7 6 35 35 H 1.07994 * 119.92594 * 179.70030 * 9 8 7 36 36 H 1.08000 * 119.96105 * 179.97438 * 10 9 8 37 37 H 1.07991 * 120.03901 * 180.02562 * 11 10 9 38 38 H 1.08000 * 120.86562 * 180.27513 * 12 4 3 39 39 H 1.09005 * 109.88624 * 242.66713 * 15 14 13 40 40 H 1.09008 * 109.88789 * 3.84580 * 15 14 13 41 41 H 1.08995 * 110.70664 * 140.66991 * 16 15 14 42 42 H 1.08996 * 110.70409 * 263.72861 * 16 15 14 43 43 H 0.96698 * 113.99948 * 61.45990 * 18 17 16 44 44 H 0.96994 * 120.00020 * 180.02562 * 22 21 19 45 45 H 1.08994 * 110.37385 * 332.46391 * 27 14 13 46 46 H 1.08995 * 110.37776 * 94.80671 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1466 1.1517 0.0000 4 6 3.4778 1.1944 0.0005 5 7 4.1429 2.4119 0.0010 6 6 5.5313 2.4498 -0.1572 7 6 6.2962 3.3165 0.6130 8 6 7.6681 3.3474 0.4582 9 6 8.2795 2.5249 -0.4704 10 6 7.5204 1.6650 -1.2428 11 6 6.1485 1.6246 -1.0887 12 6 4.1916 -0.0002 0.0068 13 6 3.4778 -1.1945 0.0009 14 7 4.1424 -2.4111 0.0013 15 6 5.0015 -2.5435 1.1922 16 6 4.5665 -3.8275 1.9294 17 6 3.8698 -4.6515 0.8148 18 8 4.8285 -5.3619 0.0284 19 6 2.8493 -5.5943 1.3982 20 1 1.8081 -5.4980 1.1277 21 6 3.2446 -6.5800 2.2775 22 7 4.5124 -6.6971 2.6074 23 14 1.9798 -7.7493 3.0003 24 1 0.6335 -7.4089 2.4741 25 1 2.3216 -9.1439 2.6219 26 1 1.9785 -7.6240 4.4800 27 6 3.1851 -3.5377 -0.0162 28 7 2.1465 -1.1517 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5136 32 1 3.6446 3.2368 0.1112 33 1 5.8189 3.9626 1.3349 34 1 8.2639 4.0181 1.0596 35 1 9.3521 2.5545 -0.5928 36 1 8.0008 1.0243 -1.9673 37 1 5.5563 0.9526 -1.6919 38 1 5.2716 -0.0003 0.0118 39 1 6.0453 -2.6255 0.8890 40 1 4.8690 -1.6791 1.8430 41 1 5.4336 -4.3611 2.3184 42 1 3.8680 -3.5928 2.7326 43 1 5.3500 -6.0038 0.5293 44 1 4.7906 -7.3907 3.2256 45 1 2.2437 -3.2430 0.4473 46 1 3.0162 -3.8764 -1.0383 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894350733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:39 Heat of formation + Delta-G solvation = 34.653804 kcal Electronic energy + Delta-G solvation = -29464.528044 eV Core-core repulsion = 25546.837063 eV Total energy + Delta-G solvation = -3917.690981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.43792 -40.64999 -39.95617 -37.34580 -36.78217 -34.20093 -33.82759 -33.26246 -31.90979 -30.68566 -30.41241 -29.89430 -29.08075 -26.78506 -24.61152 -24.17200 -23.47175 -22.44597 -21.84984 -21.43791 -19.36165 -19.24838 -18.52554 -17.94753 -17.16560 -17.06728 -16.88772 -16.61205 -16.19001 -15.95724 -15.85129 -15.55946 -15.09893 -14.84491 -14.44812 -14.35759 -14.34433 -14.03899 -13.93921 -13.63107 -13.44637 -13.23322 -13.17325 -12.93686 -12.71070 -12.65330 -12.49349 -12.35431 -12.24505 -12.09934 -11.89021 -11.72690 -11.19576 -11.10986 -10.63539 -10.35860 -10.30142 -10.12187 -9.88649 -9.48306 -8.82982 -8.23435 -6.38008 -0.05073 0.04156 0.42736 0.60995 1.39436 1.43098 1.53929 1.74994 2.36705 2.48403 2.77536 2.89965 3.01708 3.12137 3.45801 3.73262 3.92354 3.96223 3.98621 4.02841 4.13342 4.26173 4.29635 4.33236 4.40542 4.52465 4.52754 4.61217 4.67818 4.71785 4.74615 4.79597 4.92146 5.04367 5.08759 5.11805 5.26546 5.33804 5.38991 5.46427 5.47097 5.49868 5.61489 5.69539 5.77471 6.01690 6.07993 6.12207 6.20288 6.56640 6.66247 7.25435 7.32587 7.42380 8.82681 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.003176 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.053669 B = 8813.481413 C =10230.073435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.365 3.635 3 N -0.594 5.594 4 C 0.441 3.559 5 N -0.644 5.644 6 C 0.142 3.858 7 C -0.144 4.144 8 C -0.095 4.095 9 C -0.136 4.136 10 C -0.103 4.103 11 C -0.160 4.160 12 C -0.309 4.309 13 C 0.368 3.632 14 N -0.470 5.470 15 C 0.065 3.935 16 C -0.131 4.131 17 C 0.238 3.762 18 O -0.587 6.587 19 C -0.558 4.558 20 H 0.053 0.947 21 C 0.034 3.966 22 N -0.908 5.908 23 Si 0.959 3.041 24 H -0.272 1.272 25 H -0.278 1.278 26 H -0.277 1.277 27 C 0.075 3.925 28 N -0.605 5.605 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.425 0.575 33 H 0.144 0.856 34 H 0.155 0.845 35 H 0.148 0.852 36 H 0.137 0.863 37 H 0.110 0.890 38 H 0.152 0.848 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.375 0.625 44 H 0.270 0.730 45 H 0.081 0.919 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.969 21.268 -2.718 21.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.096 3.904 3 N -0.321 5.321 4 C 0.200 3.800 5 N -0.271 5.271 6 C 0.047 3.953 7 C -0.165 4.165 8 C -0.114 4.114 9 C -0.154 4.154 10 C -0.121 4.121 11 C -0.181 4.181 12 C -0.339 4.339 13 C 0.131 3.869 14 N -0.186 5.186 15 C -0.060 4.060 16 C -0.170 4.170 17 C 0.198 3.802 18 O -0.394 6.394 19 C -0.596 4.596 20 H 0.071 0.929 21 C -0.168 4.168 22 N -0.548 5.548 23 Si 0.785 3.215 24 H -0.197 1.197 25 H -0.203 1.203 26 H -0.203 1.203 27 C -0.051 4.051 28 N -0.330 5.330 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.106 0.894 32 H 0.264 0.736 33 H 0.161 0.839 34 H 0.173 0.827 35 H 0.166 0.834 36 H 0.155 0.845 37 H 0.128 0.872 38 H 0.170 0.830 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.223 0.777 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.359 21.421 -3.545 21.971 hybrid contribution -0.072 -1.092 1.278 1.682 sum 3.288 20.329 -2.267 20.718 Atomic orbital electron populations 1.20664 0.83198 1.04917 1.04862 1.23482 0.98956 0.81553 0.86455 1.67800 1.07174 1.30984 1.26140 1.18298 0.88253 0.86361 0.87106 1.41652 1.04687 1.05318 1.75463 1.17801 0.81700 0.99469 0.96283 1.21215 0.94481 1.01422 0.99387 1.21370 0.93599 0.98649 0.97758 1.21512 1.01341 0.96123 0.96452 1.21272 0.92570 0.98650 0.99639 1.21225 0.96387 1.01842 0.98638 1.21755 1.02548 0.90685 1.18918 1.20231 0.88265 0.91182 0.87234 1.60436 1.19833 1.00387 1.37914 1.22874 0.97226 0.98261 0.87664 1.23062 1.00767 0.94773 0.98404 1.19742 0.86151 0.88215 0.86122 1.86145 1.54565 1.57609 1.41119 1.21728 0.94484 1.16298 1.27135 0.92889 1.25648 0.97400 0.98190 0.95514 1.69802 1.15883 1.34071 1.35001 0.85488 0.79377 0.78634 0.78007 1.19693 1.20316 1.20292 1.22873 0.94280 0.87718 1.00279 1.68252 1.09039 1.31370 1.24333 0.88420 0.87896 0.89381 0.73585 0.83853 0.82728 0.83392 0.84464 0.87184 0.83018 0.89253 0.92190 0.90842 0.93607 0.77655 0.92081 0.90055 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.79 10.32 71.24 0.73 -1.06 16 2 C 0.37 11.75 7.64 138.78 1.06 12.81 16 3 N -0.59 -18.16 10.36 -185.56 -1.92 -20.08 16 4 C 0.44 13.09 7.47 132.93 0.99 14.08 16 5 N -0.64 -14.54 5.47 -185.19 -1.01 -15.55 16 6 C 0.14 3.00 5.88 38.19 0.22 3.23 16 7 C -0.14 -2.33 9.97 22.40 0.22 -2.11 16 8 C -0.10 -1.29 10.04 22.25 0.22 -1.06 16 9 C -0.14 -1.97 10.04 22.29 0.22 -1.75 16 10 C -0.10 -1.89 10.04 22.25 0.22 -1.67 16 11 C -0.16 -3.62 7.39 22.40 0.17 -3.46 16 12 C -0.31 -10.26 7.09 22.71 0.16 -10.10 16 13 C 0.37 14.24 6.15 132.95 0.82 15.06 16 14 N -0.47 -19.71 5.20 -691.39 -3.60 -23.30 16 15 C 0.06 2.58 6.48 86.65 0.56 3.14 16 16 C -0.13 -6.11 5.37 31.78 0.17 -5.94 16 17 C 0.24 12.12 0.87 -10.15 -0.01 12.11 16 18 O -0.59 -31.05 13.16 -148.98 -1.96 -33.01 16 19 C -0.56 -30.56 8.27 25.60 0.21 -30.35 16 20 H 0.05 2.94 7.79 -2.91 -0.02 2.92 16 21 C 0.03 1.77 5.29 84.65 0.45 2.22 16 22 N -0.91 -48.06 10.75 21.45 0.23 -47.83 16 23 Si 0.96 42.38 29.54 68.60 2.03 44.40 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 25 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 26 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 27 C 0.07 3.53 5.56 86.78 0.48 4.01 16 28 N -0.60 -23.13 8.21 -185.66 -1.53 -24.65 16 29 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.42 7.69 8.95 -92.71 -0.83 6.86 16 33 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 35 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 37 H 0.11 2.89 6.67 -2.92 -0.02 2.87 16 38 H 0.15 4.80 5.46 -2.91 -0.02 4.79 16 39 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 40 H 0.06 2.22 7.16 -2.38 -0.02 2.20 16 41 H 0.07 3.55 7.54 -2.39 -0.02 3.54 16 42 H 0.05 2.22 8.04 -2.39 -0.02 2.20 16 43 H 0.37 19.82 7.56 -74.06 -0.56 19.26 16 44 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 45 H 0.08 3.92 6.47 -2.39 -0.02 3.91 16 46 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -63.74 374.77 -1.20 -64.94 By element: Atomic # 1 Polarization: 46.27 SS G_CDS: -0.36 Total: 45.91 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 6.92 Total: 9.17 kcal Atomic # 7 Polarization: -123.59 SS G_CDS: -7.83 Total: -131.41 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -1.96 Total: -33.01 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -63.74 -1.20 -64.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894350733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.592 kcal (2) G-P(sol) polarization free energy of solvation -63.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds