Wall clock time and date at job start Tue Mar 31 2020 23:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38043 * 126.29379 * 2 1 4 4 C 1.47429 * 126.41497 * 0.04226 * 3 2 1 5 5 O 1.21603 * 119.99827 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00013 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00147 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47221 * 180.02562 * 7 6 4 9 9 H 1.09000 * 115.55057 * 29.33284 * 8 7 6 10 10 C 1.52996 * 117.49976 * 243.62242 * 8 7 6 11 11 C 1.52995 * 60.00178 * 252.50924 * 10 8 7 12 12 H 1.08999 * 117.51393 * 107.47688 * 11 10 8 13 13 C 1.50694 * 117.50169 * 252.50953 * 11 10 8 14 14 C 1.38672 * 120.41995 * 188.62032 * 13 11 10 15 15 C 1.38631 * 118.42488 * 180.02562 * 14 13 11 16 16 C 1.38228 * 119.15474 * 0.02562 * 15 14 13 17 17 N 1.31856 * 120.76741 * 359.97438 * 16 15 14 18 18 C 1.31884 * 121.72348 * 359.70776 * 17 16 15 19 19 C 1.41293 * 107.17018 * 180.02562 * 3 2 1 20 20 N 1.30448 * 108.02361 * 359.74144 * 19 3 2 21 21 N 1.34263 * 126.28562 * 180.02562 * 2 1 3 22 22 C 1.46491 * 125.75867 * 359.95459 * 21 2 1 23 23 C 1.50702 * 109.46957 * 89.99963 * 22 21 2 24 24 H 1.08002 * 120.00299 * 0.02562 * 23 22 21 25 25 C 1.37884 * 119.99942 * 179.72213 * 23 22 21 26 26 N 1.31514 * 119.99985 * 180.27663 * 25 23 22 27 27 Si 1.86800 * 119.99777 * 0.28166 * 25 23 22 28 28 H 1.48498 * 109.47109 * 89.99834 * 27 25 23 29 29 H 1.48507 * 109.46754 * 209.99574 * 27 25 23 30 30 H 1.48498 * 109.47278 * 329.99405 * 27 25 23 31 31 H 1.08995 * 109.47253 * 269.97603 * 1 2 3 32 32 H 1.09009 * 109.47074 * 29.97482 * 1 2 3 33 33 H 1.09002 * 109.47486 * 149.97639 * 1 2 3 34 34 H 0.97008 * 119.99661 * 0.02562 * 6 4 3 35 35 H 1.08999 * 109.46973 * 300.00494 * 7 6 4 36 36 H 1.08996 * 109.46748 * 59.99899 * 7 6 4 37 37 H 1.09000 * 117.50060 * 0.02562 * 10 8 7 38 38 H 1.09000 * 117.50152 * 145.02123 * 10 8 7 39 39 H 1.08005 * 120.78791 * 359.97438 * 14 13 11 40 40 H 1.07994 * 120.41953 * 179.97438 * 15 14 13 41 41 H 1.08007 * 119.61429 * 180.02562 * 16 15 14 42 42 H 1.07997 * 119.61632 * 180.30942 * 18 17 16 43 43 H 1.07997 * 125.99037 * 180.02562 * 19 3 2 44 44 H 1.09004 * 109.47166 * 330.00229 * 22 21 2 45 45 H 1.08994 * 109.47507 * 209.99935 * 22 21 2 46 46 H 0.96996 * 119.99730 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8858 2.5203 0.0009 5 8 0.6996 2.7878 0.0012 6 7 2.8000 3.5106 0.0013 7 6 2.3646 4.9094 0.0016 8 6 3.5903 5.8251 0.0014 9 1 4.4799 5.4197 -0.4807 10 6 3.7957 6.7308 1.2172 11 6 3.3471 7.3310 -0.1166 12 1 2.3139 7.6693 -0.1944 13 6 4.3560 8.1403 -0.8899 14 6 3.9693 8.8582 -2.0116 15 6 4.9315 9.5881 -2.6921 16 6 6.2355 9.5756 -2.2335 17 7 6.5673 8.8812 -1.1628 18 6 5.6773 8.1806 -0.4873 19 6 3.6590 0.6497 -0.0006 20 7 3.6340 -0.6545 0.0047 21 7 2.3015 -1.0823 -0.0005 22 6 1.8499 -2.4758 -0.0002 23 6 1.6942 -2.9537 -1.4209 24 1 1.9104 -2.2862 -2.2420 25 6 1.2816 -4.2451 -1.6726 26 7 1.1509 -4.6638 -2.9124 27 14 0.9082 -5.3998 -0.2525 28 1 -0.5242 -5.2790 0.1202 29 1 1.1969 -6.7977 -0.6622 30 1 1.7550 -5.0407 0.9133 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3634 0.8903 -0.5135 33 1 -0.3634 -0.8898 -0.5142 34 1 3.7463 3.2972 0.0006 35 1 1.7661 5.1038 -0.8884 36 1 1.7659 5.1033 0.8915 37 1 3.0579 6.6740 2.0176 38 1 4.8207 6.9213 1.5355 39 1 2.9428 8.8482 -2.3475 40 1 4.6659 10.1584 -3.5698 41 1 6.9911 10.1419 -2.7578 42 1 5.9856 7.6282 0.3879 43 1 4.5449 1.2674 -0.0004 44 1 0.8915 -2.5471 0.5143 45 1 2.5848 -3.0958 0.5132 46 1 0.8603 -5.5721 -3.0894 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897655977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:16 Heat of formation + Delta-G solvation = 69.223906 kcal Electronic energy + Delta-G solvation = -27343.386554 eV Core-core repulsion = 23427.194645 eV Total energy + Delta-G solvation = -3916.191909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.32978 -41.29962 -40.16068 -38.56938 -35.80172 -35.32742 -33.95142 -33.31938 -32.84251 -31.85730 -29.95256 -28.61159 -27.31848 -25.31789 -24.90422 -24.30223 -23.33128 -22.13393 -21.70412 -21.11161 -20.38242 -19.28415 -18.45963 -18.27214 -17.34306 -16.94360 -16.77973 -16.53350 -16.17090 -16.04740 -15.70362 -15.41708 -15.08274 -15.00312 -14.79343 -14.58223 -14.35409 -14.13299 -14.05172 -13.92620 -13.77182 -13.67484 -13.14584 -13.02890 -12.98000 -12.60334 -12.57582 -12.33054 -12.15643 -11.91381 -11.85539 -11.72439 -11.16459 -10.92314 -10.84120 -10.60358 -10.36355 -10.25891 -10.05477 -9.69106 -9.41834 -8.43483 -6.55656 0.14355 0.35984 0.66454 1.32089 1.33928 1.35336 1.45363 1.63019 2.24411 2.30951 2.54866 2.71964 2.88837 3.07897 3.41456 3.69852 3.70959 3.73385 3.80864 3.97232 3.99801 4.08029 4.12783 4.14095 4.19514 4.25685 4.40958 4.48229 4.53523 4.61465 4.66422 4.71406 4.77037 4.82118 4.88689 5.00310 5.06621 5.11346 5.14194 5.17661 5.23566 5.26526 5.39496 5.56481 5.64947 5.80020 5.83604 6.20909 6.47421 6.64005 6.81013 7.04762 7.08314 7.37791 8.72922 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023181 B = 0.001764 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.606621 B =15869.502299 C =16163.864346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.147 3.853 3 C -0.330 4.330 4 C 0.604 3.396 5 O -0.584 6.584 6 N -0.713 5.713 7 C 0.157 3.843 8 C -0.149 4.149 9 H 0.117 0.883 10 C -0.155 4.155 11 C -0.103 4.103 12 H 0.127 0.873 13 C -0.106 4.106 14 C -0.079 4.079 15 C -0.168 4.168 16 C 0.075 3.925 17 N -0.514 5.514 18 C 0.082 3.918 19 C 0.081 3.919 20 N -0.335 5.335 21 N -0.339 5.339 22 C 0.234 3.766 23 C -0.554 4.554 24 H 0.025 0.975 25 C 0.022 3.978 26 N -0.935 5.935 27 Si 0.950 3.050 28 H -0.252 1.252 29 H -0.278 1.278 30 H -0.242 1.242 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.412 0.588 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.153 0.847 40 H 0.160 0.840 41 H 0.173 0.827 42 H 0.165 0.835 43 H 0.227 0.773 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.314 28.148 7.976 29.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.011 3.989 3 C -0.345 4.345 4 C 0.393 3.607 5 O -0.466 6.466 6 N -0.365 5.365 7 C 0.033 3.967 8 C -0.167 4.167 9 H 0.135 0.865 10 C -0.192 4.192 11 C -0.123 4.123 12 H 0.145 0.855 13 C -0.108 4.108 14 C -0.105 4.105 15 C -0.188 4.188 16 C -0.081 4.081 17 N -0.223 5.223 18 C -0.074 4.074 19 C -0.106 4.106 20 N -0.154 5.154 21 N -0.116 5.116 22 C 0.114 3.886 23 C -0.592 4.592 24 H 0.044 0.956 25 C -0.178 4.178 26 N -0.573 5.573 27 Si 0.771 3.229 28 H -0.176 1.176 29 H -0.203 1.203 30 H -0.166 1.166 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.249 0.751 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.170 0.830 40 H 0.178 0.822 41 H 0.190 0.810 42 H 0.182 0.818 43 H 0.243 0.757 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.009 26.973 8.143 28.809 hybrid contribution -0.926 -0.297 -0.619 1.153 sum 5.082 26.675 7.524 28.178 Atomic orbital electron populations 1.20632 0.85719 1.04318 1.04448 1.22004 0.96033 0.86692 0.94126 1.19987 0.93300 0.93215 1.28045 1.17102 0.85086 0.83856 0.74660 1.90682 1.17979 1.84737 1.53170 1.45534 1.09953 1.05345 1.75675 1.20844 0.95168 0.78666 1.01976 1.22485 0.99403 0.90603 1.04211 0.86503 1.23393 1.04036 1.00917 0.90843 1.21045 0.98936 0.92601 0.99678 0.85473 1.20261 0.95050 0.98735 0.96756 1.21806 1.01362 0.93978 0.93378 1.22465 0.93931 1.00456 1.01924 1.23206 0.96376 0.95918 0.92649 1.67706 1.38426 1.07935 1.08212 1.22935 0.89201 0.96270 0.99007 1.24513 0.97713 0.91590 0.96828 1.77088 0.98047 1.14520 1.25743 1.48760 1.03495 1.07285 1.52029 1.19887 0.96784 0.74597 0.97350 1.21192 1.48279 0.98748 0.90956 0.95629 1.25834 0.93644 0.99229 0.99070 1.70026 1.46662 1.18974 1.21590 0.85689 0.80449 0.77772 0.79013 1.17619 1.20279 1.16577 0.88166 0.88584 0.91131 0.75110 0.92067 0.91235 0.87036 0.87076 0.82973 0.82214 0.81030 0.81811 0.75721 0.91145 0.92568 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.26 9.34 71.23 0.67 -2.59 16 2 C 0.15 5.81 7.01 42.14 0.30 6.10 16 3 C -0.33 -11.35 6.13 -20.15 -0.12 -11.48 16 4 C 0.60 18.39 7.81 86.66 0.68 19.07 16 5 O -0.58 -21.05 14.84 -4.04 -0.06 -21.11 16 6 N -0.71 -14.69 5.55 -466.38 -2.59 -17.27 16 7 C 0.16 2.62 5.96 86.38 0.51 3.14 16 8 C -0.15 -1.66 5.49 -10.80 -0.06 -1.72 16 9 H 0.12 1.28 8.04 -2.39 -0.02 1.26 16 10 C -0.16 -1.35 9.51 30.59 0.29 -1.05 16 11 C -0.10 -1.06 5.78 -11.54 -0.07 -1.12 16 12 H 0.13 1.11 8.14 -2.39 -0.02 1.10 16 13 C -0.11 -1.35 5.62 -19.78 -0.11 -1.47 16 14 C -0.08 -0.91 9.89 22.47 0.22 -0.69 16 15 C -0.17 -1.79 10.11 22.36 0.23 -1.57 16 16 C 0.07 1.02 11.18 84.69 0.95 1.96 16 17 N -0.51 -9.26 10.36 -195.84 -2.03 -11.28 16 18 C 0.08 1.23 10.48 84.67 0.89 2.12 16 19 C 0.08 2.57 11.50 85.65 0.99 3.56 16 20 N -0.33 -13.88 12.50 -56.27 -0.70 -14.58 16 21 N -0.34 -14.92 3.56 -336.72 -1.20 -16.12 16 22 C 0.23 10.83 4.85 85.64 0.42 11.24 16 23 C -0.55 -31.27 9.94 25.60 0.25 -31.01 16 24 H 0.03 1.68 8.06 -2.91 -0.02 1.65 16 25 C 0.02 1.25 5.47 84.66 0.46 1.71 16 26 N -0.93 -56.36 13.96 21.45 0.30 -56.06 16 27 Si 0.95 40.24 27.47 68.60 1.88 42.13 16 28 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 29 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 30 H -0.24 -9.40 6.54 99.48 0.65 -8.75 16 31 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.10 3.38 6.50 -2.38 -0.02 3.37 16 33 H 0.07 2.61 7.70 -2.39 -0.02 2.59 16 34 H 0.41 6.26 7.36 -92.70 -0.68 5.58 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.21 7.88 -2.39 -0.02 1.19 16 37 H 0.11 0.88 8.03 -2.39 -0.02 0.86 16 38 H 0.11 0.77 6.20 -2.39 -0.01 0.75 16 39 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 40 H 0.16 0.81 8.06 -2.91 -0.02 0.78 16 41 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 42 H 0.16 1.87 6.04 -2.91 -0.02 1.86 16 43 H 0.23 4.51 7.50 -2.91 -0.02 4.49 16 44 H 0.07 2.92 7.06 -2.38 -0.02 2.90 16 45 H 0.06 2.57 7.19 -2.39 -0.02 2.55 16 46 H 0.27 15.24 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -77.36 389.51 2.37 -74.99 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.28 Total: 23.11 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 6.48 Total: -3.80 kcal Atomic # 7 Polarization: -109.10 SS G_CDS: -6.22 Total: -115.32 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.06 Total: -21.11 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 1.88 Total: 42.13 kcal Total: -77.36 2.37 -74.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897655977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.216 kcal (2) G-P(sol) polarization free energy of solvation -77.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds