Wall clock time and date at job start Tue Mar 31 2020 23:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38046 * 126.28692 * 2 1 4 4 C 1.47422 * 126.41739 * 0.02621 * 3 2 1 5 5 O 1.21603 * 120.00017 * 359.70460 * 4 3 2 6 6 N 1.34781 * 119.99981 * 179.71071 * 4 3 2 7 7 C 1.46501 * 119.99816 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.46893 * 179.97438 * 7 6 4 9 9 H 1.09007 * 110.33697 * 55.65699 * 8 7 6 10 10 C 1.54340 * 110.29479 * 177.75717 * 8 7 6 11 11 C 1.54208 * 102.45957 * 145.09362 * 10 8 7 12 12 C 1.51215 * 105.20264 * 334.02168 * 11 10 8 13 13 C 1.38746 * 130.69766 * 197.06632 * 12 11 10 14 14 C 1.38570 * 118.56164 * 179.71029 * 13 12 11 15 15 C 1.38235 * 118.99113 * 359.94255 * 14 13 12 16 16 N 1.31686 * 120.79727 * 0.05661 * 15 14 13 17 17 C 1.32296 * 122.03424 * 359.97438 * 16 15 14 18 18 C 1.41293 * 107.16794 * 179.75465 * 3 2 1 19 19 N 1.30444 * 108.02452 * 0.24960 * 18 3 2 20 20 N 1.34257 * 126.29465 * 180.18064 * 2 1 3 21 21 C 1.46501 * 125.75269 * 359.97438 * 20 2 1 22 22 C 1.50708 * 109.47097 * 270.26789 * 21 20 2 23 23 H 1.07994 * 119.99562 * 359.97438 * 22 21 20 24 24 C 1.37876 * 119.99862 * 180.02562 * 22 21 20 25 25 N 1.31508 * 119.99897 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99773 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.46952 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47147 * 119.99762 * 26 24 22 29 29 H 1.48500 * 109.46638 * 239.99679 * 26 24 22 30 30 H 1.09001 * 109.46663 * 90.02501 * 1 2 3 31 31 H 1.08997 * 109.47106 * 210.02003 * 1 2 3 32 32 H 1.08998 * 109.47253 * 330.02865 * 1 2 3 33 33 H 0.96995 * 120.00067 * 359.97438 * 6 4 3 34 34 H 1.08999 * 109.47188 * 60.00199 * 7 6 4 35 35 H 1.08994 * 109.47341 * 299.99709 * 7 6 4 36 36 H 1.08994 * 110.82261 * 263.51334 * 10 8 7 37 37 H 1.09006 * 110.82269 * 26.86381 * 10 8 7 38 38 H 1.08997 * 110.56181 * 214.92970 * 11 10 8 39 39 H 1.09007 * 109.98686 * 92.80804 * 11 10 8 40 40 H 1.07997 * 120.71948 * 359.66500 * 13 12 11 41 41 H 1.08003 * 120.51165 * 179.97438 * 14 13 12 42 42 H 1.07997 * 119.60020 * 180.02562 * 15 14 13 43 43 H 1.07996 * 125.99025 * 180.27439 * 18 3 2 44 44 H 1.09000 * 109.47266 * 30.26617 * 21 20 2 45 45 H 1.09002 * 109.47117 * 150.26869 * 21 20 2 46 46 H 0.97006 * 119.99978 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8857 2.5203 0.0005 5 8 0.6995 2.7877 -0.0044 6 7 2.7998 3.5107 0.0064 7 6 2.3642 4.9095 0.0063 8 6 3.5899 5.8253 0.0142 9 1 4.2429 5.5915 -0.8267 10 6 3.1532 7.3046 -0.0424 11 6 4.2183 7.9994 0.8298 12 6 4.7068 6.9329 1.7841 13 6 5.4119 7.0381 2.9744 14 6 5.7299 5.8772 3.6608 15 6 5.3340 4.6601 3.1384 16 7 4.6656 4.5981 2.0055 17 6 4.3436 5.6830 1.3204 18 6 3.6590 0.6500 0.0058 19 7 3.6341 -0.6542 0.0036 20 7 2.3017 -1.0821 -0.0034 21 6 1.8502 -2.4758 -0.0073 22 6 1.6895 -2.9557 1.4123 23 1 1.9029 -2.2894 2.2349 24 6 1.2712 -4.2458 1.6606 25 7 1.0119 -5.0573 0.6588 26 14 1.0714 -4.8404 3.4202 27 1 1.4231 -3.7429 4.3565 28 1 -0.3372 -5.2525 3.6465 29 1 1.9700 -5.9989 3.6561 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8898 0.5141 32 1 -0.3633 0.8902 0.5134 33 1 3.7460 3.2974 0.0106 34 1 1.7614 5.1023 0.8937 35 1 1.7699 5.1050 -0.8862 36 1 3.1829 7.6784 -1.0657 37 1 2.1590 7.4318 0.3861 38 1 3.7783 8.8293 1.3828 39 1 5.0388 8.3527 0.2052 40 1 5.7072 8.0038 3.3572 41 1 6.2783 5.9224 4.5902 42 1 5.5762 3.7492 3.6655 43 1 4.5448 1.2677 0.0115 44 1 0.8936 -2.5464 -0.5251 45 1 2.5869 -3.0950 -0.5190 46 1 0.7179 -5.9651 0.8335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898524157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:14 Heat of formation + Delta-G solvation = 58.228353 kcal Electronic energy + Delta-G solvation = -28536.110507 eV Core-core repulsion = 24619.441795 eV Total energy + Delta-G solvation = -3916.668712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.12698 -40.61365 -38.62252 -36.95696 -34.46321 -33.80870 -32.67688 -31.95449 -31.06066 -29.96442 -29.09073 -27.24232 -26.53777 -24.64004 -23.80885 -23.24172 -22.10414 -21.50633 -20.89380 -19.56790 -18.83385 -17.12219 -16.99271 -16.73477 -16.50649 -15.92135 -15.59097 -15.05764 -14.89816 -14.79226 -14.39121 -14.16823 -13.80434 -13.70135 -13.63835 -13.26611 -13.04100 -12.85225 -12.49011 -12.42463 -12.30091 -12.12490 -11.97857 -11.78763 -11.70663 -11.50761 -11.38994 -11.34062 -11.04784 -10.87683 -10.32546 -10.05556 -10.00262 -9.85008 -9.48534 -9.24374 -9.00569 -8.73611 -8.67563 -8.47091 -7.77653 -6.29399 -4.36820 0.82826 1.02653 2.33039 2.92664 3.19876 3.27457 3.29190 3.36790 3.50065 3.65529 3.70041 4.07236 4.09687 4.28294 4.39368 4.51755 4.60644 4.64822 4.87959 4.98185 5.04659 5.08322 5.09400 5.24819 5.27974 5.39708 5.41471 5.47801 5.51890 5.62781 5.67590 5.76744 5.86214 5.87802 5.93653 5.96688 6.10773 6.18410 6.44264 6.56480 6.69842 6.81716 6.88599 6.96876 7.27955 7.62386 7.79232 7.82828 7.87757 7.98909 8.49773 8.69700 8.80474 9.29968 10.78765 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016323 B = 0.002475 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.951690 B =11311.827448 C =12285.318494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.163 3.837 3 C -0.328 4.328 4 C 0.604 3.396 5 O -0.564 6.564 6 N -0.723 5.723 7 C 0.139 3.861 8 C -0.052 4.052 9 H 0.101 0.899 10 C -0.111 4.111 11 C -0.077 4.077 12 C -0.153 4.153 13 C -0.067 4.067 14 C -0.174 4.174 15 C 0.107 3.893 16 N -0.466 5.466 17 C 0.123 3.877 18 C 0.061 3.939 19 N -0.298 5.298 20 N -0.316 5.316 21 C 0.251 3.749 22 C -0.538 4.538 23 H 0.066 0.934 24 C 0.067 3.933 25 N -0.890 5.890 26 Si 0.907 3.093 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.403 0.597 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.159 0.841 43 H 0.174 0.826 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.619 26.815 0.174 27.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.026 3.974 3 C -0.344 4.344 4 C 0.394 3.606 5 O -0.444 6.444 6 N -0.375 5.375 7 C 0.015 3.985 8 C -0.072 4.072 9 H 0.119 0.881 10 C -0.150 4.150 11 C -0.115 4.115 12 C -0.154 4.154 13 C -0.093 4.093 14 C -0.194 4.194 15 C -0.050 4.050 16 N -0.174 5.174 17 C -0.015 4.015 18 C -0.126 4.126 19 N -0.118 5.118 20 N -0.093 5.093 21 C 0.134 3.866 22 C -0.577 4.577 23 H 0.084 0.916 24 C -0.137 4.137 25 N -0.528 5.528 26 Si 0.734 3.266 27 H -0.195 1.195 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.238 0.762 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.148 0.852 41 H 0.154 0.846 42 H 0.176 0.824 43 H 0.191 0.809 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.158 24.730 -0.200 25.746 hybrid contribution 0.446 0.928 1.516 1.833 sum 7.604 25.658 1.316 26.794 Atomic orbital electron populations 1.20593 0.86977 1.04725 1.03150 1.21453 0.94890 0.86554 0.94547 1.19687 0.93097 0.92583 1.28997 1.17277 0.84931 0.83960 0.74416 1.90670 1.16833 1.84582 1.52293 1.45587 1.10132 1.04833 1.76990 1.21128 0.94587 0.80627 1.02179 1.21016 0.96274 0.96206 0.93675 0.88061 1.22301 0.99353 0.92282 1.01030 1.20920 0.98525 0.96276 0.95753 1.21443 1.00102 0.97450 0.96452 1.21041 0.95860 0.99067 0.93309 1.22103 1.02256 0.93540 1.01530 1.22731 0.93097 0.97794 0.91421 1.66864 1.10840 1.32600 1.07130 1.21785 0.95434 0.88502 0.95800 1.23712 0.96433 0.92483 0.99966 1.77120 0.98577 1.12326 1.23813 1.49337 1.02526 1.08199 1.49232 1.19826 0.96361 0.71077 0.99346 1.21317 1.47104 0.98095 0.91142 0.91602 1.24925 0.94529 0.96025 0.98233 1.69926 1.44753 1.07134 1.30956 0.86280 0.77928 0.78832 0.83565 1.19512 1.20571 1.20600 0.90634 0.90039 0.88684 0.76185 0.91847 0.91129 0.89399 0.90001 0.90234 0.89857 0.85222 0.84639 0.82405 0.80855 0.92624 0.92563 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.84 9.34 36.01 0.34 -1.50 16 2 C 0.16 3.49 7.01 -81.60 -0.57 2.92 16 3 C -0.33 -6.43 6.13 -105.07 -0.64 -7.08 16 4 C 0.60 10.85 7.81 -12.52 -0.10 10.75 16 5 O -0.56 -11.39 14.84 5.27 0.08 -11.31 16 6 N -0.72 -10.04 5.09 -61.38 -0.31 -10.35 16 7 C 0.14 1.57 5.00 -4.04 -0.02 1.55 16 8 C -0.05 -0.44 2.95 -90.69 -0.27 -0.71 16 9 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 10 C -0.11 -0.64 6.58 -25.40 -0.17 -0.80 16 11 C -0.08 -0.43 6.76 -27.00 -0.18 -0.62 16 12 C -0.15 -1.28 6.16 -104.21 -0.64 -1.92 16 13 C -0.07 -0.51 10.17 -39.27 -0.40 -0.91 16 14 C -0.17 -1.39 10.12 -39.46 -0.40 -1.78 16 15 C 0.11 1.07 11.18 -17.62 -0.20 0.87 16 16 N -0.47 -5.52 9.32 -9.19 -0.09 -5.61 16 17 C 0.12 1.25 6.48 -82.04 -0.53 0.72 16 18 C 0.06 1.15 11.50 -16.98 -0.20 0.95 16 19 N -0.30 -6.72 12.50 30.86 0.39 -6.33 16 20 N -0.32 -7.43 3.56 -57.77 -0.21 -7.64 16 21 C 0.25 6.43 5.78 -5.19 -0.03 6.40 16 22 C -0.54 -14.83 9.39 -34.44 -0.32 -15.16 16 23 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 24 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 25 N -0.89 -25.00 13.29 55.43 0.74 -24.26 16 26 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 27 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.08 1.60 7.71 -51.93 -0.40 1.20 16 32 H 0.09 1.80 6.50 -51.93 -0.34 1.46 16 33 H 0.40 5.13 6.69 -40.82 -0.27 4.85 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.47 7.91 -51.93 -0.41 0.06 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.38 8.14 -51.92 -0.42 -0.05 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 41 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 42 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.17 2.52 7.50 -52.49 -0.39 2.13 16 44 H 0.06 1.41 7.64 -51.93 -0.40 1.02 16 45 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 46 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -33.42 386.66 -9.44 -42.86 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.41 Total: 5.24 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -4.43 Total: -4.59 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.52 Total: -54.19 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.42 -9.44 -42.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898524157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.088 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds