Wall clock time and date at job start Tue Mar 31 2020 23:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38046 * 126.28692 * 2 1 4 4 C 1.47422 * 126.41739 * 0.02621 * 3 2 1 5 5 O 1.21603 * 120.00017 * 359.70460 * 4 3 2 6 6 N 1.34781 * 119.99981 * 179.71071 * 4 3 2 7 7 C 1.46501 * 119.99816 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.46893 * 179.97438 * 7 6 4 9 9 H 1.09007 * 110.33697 * 55.65699 * 8 7 6 10 10 C 1.54340 * 110.29479 * 177.75717 * 8 7 6 11 11 C 1.54208 * 102.45957 * 145.09362 * 10 8 7 12 12 C 1.51215 * 105.20264 * 334.02168 * 11 10 8 13 13 C 1.38746 * 130.69766 * 197.06632 * 12 11 10 14 14 C 1.38570 * 118.56164 * 179.71029 * 13 12 11 15 15 C 1.38235 * 118.99113 * 359.94255 * 14 13 12 16 16 N 1.31686 * 120.79727 * 0.05661 * 15 14 13 17 17 C 1.32296 * 122.03424 * 359.97438 * 16 15 14 18 18 C 1.41293 * 107.16794 * 179.75465 * 3 2 1 19 19 N 1.30444 * 108.02452 * 0.24960 * 18 3 2 20 20 N 1.34257 * 126.29465 * 180.18064 * 2 1 3 21 21 C 1.46501 * 125.75269 * 359.97438 * 20 2 1 22 22 C 1.50708 * 109.47097 * 270.26789 * 21 20 2 23 23 H 1.07994 * 119.99562 * 359.97438 * 22 21 20 24 24 C 1.37876 * 119.99862 * 180.02562 * 22 21 20 25 25 N 1.31508 * 119.99897 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99773 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.46952 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47147 * 119.99762 * 26 24 22 29 29 H 1.48500 * 109.46638 * 239.99679 * 26 24 22 30 30 H 1.09001 * 109.46663 * 90.02501 * 1 2 3 31 31 H 1.08997 * 109.47106 * 210.02003 * 1 2 3 32 32 H 1.08998 * 109.47253 * 330.02865 * 1 2 3 33 33 H 0.96995 * 120.00067 * 359.97438 * 6 4 3 34 34 H 1.08999 * 109.47188 * 60.00199 * 7 6 4 35 35 H 1.08994 * 109.47341 * 299.99709 * 7 6 4 36 36 H 1.08994 * 110.82261 * 263.51334 * 10 8 7 37 37 H 1.09006 * 110.82269 * 26.86381 * 10 8 7 38 38 H 1.08997 * 110.56181 * 214.92970 * 11 10 8 39 39 H 1.09007 * 109.98686 * 92.80804 * 11 10 8 40 40 H 1.07997 * 120.71948 * 359.66500 * 13 12 11 41 41 H 1.08003 * 120.51165 * 179.97438 * 14 13 12 42 42 H 1.07997 * 119.60020 * 180.02562 * 15 14 13 43 43 H 1.07996 * 125.99025 * 180.27439 * 18 3 2 44 44 H 1.09000 * 109.47266 * 30.26617 * 21 20 2 45 45 H 1.09002 * 109.47117 * 150.26869 * 21 20 2 46 46 H 0.97006 * 119.99978 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8857 2.5203 0.0005 5 8 0.6995 2.7877 -0.0044 6 7 2.7998 3.5107 0.0064 7 6 2.3642 4.9095 0.0063 8 6 3.5899 5.8253 0.0142 9 1 4.2429 5.5915 -0.8267 10 6 3.1532 7.3046 -0.0424 11 6 4.2183 7.9994 0.8298 12 6 4.7068 6.9329 1.7841 13 6 5.4119 7.0381 2.9744 14 6 5.7299 5.8772 3.6608 15 6 5.3340 4.6601 3.1384 16 7 4.6656 4.5981 2.0055 17 6 4.3436 5.6830 1.3204 18 6 3.6590 0.6500 0.0058 19 7 3.6341 -0.6542 0.0036 20 7 2.3017 -1.0821 -0.0034 21 6 1.8502 -2.4758 -0.0073 22 6 1.6895 -2.9557 1.4123 23 1 1.9029 -2.2894 2.2349 24 6 1.2712 -4.2458 1.6606 25 7 1.0119 -5.0573 0.6588 26 14 1.0714 -4.8404 3.4202 27 1 1.4231 -3.7429 4.3565 28 1 -0.3372 -5.2525 3.6465 29 1 1.9700 -5.9989 3.6561 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8898 0.5141 32 1 -0.3633 0.8902 0.5134 33 1 3.7460 3.2974 0.0106 34 1 1.7614 5.1023 0.8937 35 1 1.7699 5.1050 -0.8862 36 1 3.1829 7.6784 -1.0657 37 1 2.1590 7.4318 0.3861 38 1 3.7783 8.8293 1.3828 39 1 5.0388 8.3527 0.2052 40 1 5.7072 8.0038 3.3572 41 1 6.2783 5.9224 4.5902 42 1 5.5762 3.7492 3.6655 43 1 4.5448 1.2677 0.0115 44 1 0.8936 -2.5464 -0.5251 45 1 2.5869 -3.0950 -0.5190 46 1 0.7179 -5.9651 0.8335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898524157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:13 Heat of formation + Delta-G solvation = 37.574191 kcal Electronic energy + Delta-G solvation = -28537.006138 eV Core-core repulsion = 24619.441795 eV Total energy + Delta-G solvation = -3917.564343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.29588 -41.72165 -39.98045 -37.67126 -35.83672 -35.46970 -33.87141 -33.33305 -32.72045 -30.79473 -29.85942 -28.94541 -28.10957 -25.77628 -25.02753 -24.38226 -23.26736 -22.42560 -21.63167 -21.06321 -20.35379 -18.86769 -18.41019 -17.66664 -17.31248 -17.03755 -16.71740 -16.42170 -16.27647 -16.00160 -15.74671 -15.46791 -15.18833 -14.52524 -14.45965 -14.40890 -14.24447 -14.10696 -13.95508 -13.63630 -13.59715 -13.47806 -13.14287 -13.03491 -12.95045 -12.72746 -12.69761 -12.42596 -12.33869 -12.18297 -11.85107 -11.83689 -11.69818 -10.77254 -10.74430 -10.62207 -10.24496 -10.19307 -9.97311 -9.61562 -9.39361 -8.38550 -6.54966 0.19394 0.41018 0.70969 1.33150 1.35326 1.38122 1.49218 1.68358 2.31570 2.43919 2.60750 2.85777 2.93222 3.04461 3.50351 3.75424 3.76896 3.80063 3.96229 4.07177 4.13215 4.16788 4.26179 4.29640 4.35474 4.50930 4.53803 4.59571 4.66052 4.66673 4.79396 4.83904 4.89607 4.92408 4.98359 5.05411 5.08963 5.16644 5.18080 5.26968 5.32654 5.39091 5.48694 5.61362 5.69284 5.74468 5.84318 6.06367 6.54611 6.69985 6.86381 7.12546 7.16150 7.42968 8.69534 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016323 B = 0.002475 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.951690 B =11311.827448 C =12285.318494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.144 3.856 3 C -0.329 4.329 4 C 0.602 3.398 5 O -0.589 6.589 6 N -0.705 5.705 7 C 0.139 3.861 8 C -0.046 4.046 9 H 0.113 0.887 10 C -0.106 4.106 11 C -0.073 4.073 12 C -0.155 4.155 13 C -0.073 4.073 14 C -0.171 4.171 15 C 0.079 3.921 16 N -0.501 5.501 17 C 0.094 3.906 18 C 0.081 3.919 19 N -0.335 5.335 20 N -0.338 5.338 21 C 0.268 3.732 22 C -0.556 4.556 23 H 0.049 0.951 24 C 0.024 3.976 25 N -0.916 5.916 26 Si 0.972 3.028 27 H -0.274 1.274 28 H -0.267 1.267 29 H -0.272 1.272 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.410 0.590 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.161 0.839 43 H 0.216 0.784 44 H 0.051 0.949 45 H 0.032 0.968 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.425 29.588 0.690 30.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.008 3.992 3 C -0.344 4.344 4 C 0.392 3.608 5 O -0.471 6.471 6 N -0.356 5.356 7 C 0.015 3.985 8 C -0.065 4.065 9 H 0.131 0.869 10 C -0.144 4.144 11 C -0.110 4.110 12 C -0.157 4.157 13 C -0.099 4.099 14 C -0.191 4.191 15 C -0.077 4.077 16 N -0.210 5.210 17 C -0.044 4.044 18 C -0.106 4.106 19 N -0.155 5.155 20 N -0.116 5.116 21 C 0.149 3.851 22 C -0.594 4.594 23 H 0.068 0.932 24 C -0.177 4.177 25 N -0.554 5.554 26 Si 0.796 3.204 27 H -0.199 1.199 28 H -0.192 1.192 29 H -0.197 1.197 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.246 0.754 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.130 0.870 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.175 0.825 41 H 0.177 0.823 42 H 0.178 0.822 43 H 0.232 0.768 44 H 0.069 0.931 45 H 0.050 0.950 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.989 27.539 0.307 28.676 hybrid contribution 0.258 0.202 1.353 1.392 sum 8.248 27.741 1.661 28.989 Atomic orbital electron populations 1.20566 0.85833 1.04118 1.04086 1.21957 0.95952 0.86656 0.94609 1.19989 0.93201 0.93264 1.27926 1.17124 0.85061 0.83942 0.74716 1.90654 1.17904 1.84815 1.53758 1.45511 1.09845 1.05359 1.74900 1.21291 0.96163 0.79422 1.01619 1.21074 0.94756 0.97157 0.93494 0.86937 1.22354 0.99264 0.90163 1.02607 1.20995 0.98897 0.95732 0.95376 1.21837 0.99348 0.97642 0.96861 1.21438 0.95287 1.00130 0.93033 1.22376 1.01561 0.92961 1.02181 1.22952 0.94065 0.99031 0.91693 1.66780 1.12000 1.34007 1.08196 1.22133 0.96530 0.89050 0.96656 1.24339 0.97555 0.91556 0.97142 1.77072 0.98396 1.14217 1.25846 1.49108 1.03311 1.07738 1.51395 1.19372 0.95287 0.72317 0.98134 1.21420 1.47908 0.98495 0.91548 0.93237 1.25727 0.93810 0.95896 1.02295 1.70000 1.44889 1.07615 1.32886 0.85297 0.78529 0.78161 0.78452 1.19883 1.19215 1.19704 0.88939 0.91162 0.88493 0.75367 0.93621 0.90350 0.86973 0.90227 0.88759 0.88173 0.82462 0.82297 0.82164 0.76751 0.93111 0.94987 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.43 9.34 71.24 0.67 -2.77 16 2 C 0.14 6.31 7.01 42.14 0.30 6.60 16 3 C -0.33 -12.86 6.13 -20.15 -0.12 -12.98 16 4 C 0.60 21.38 7.81 86.66 0.68 22.06 16 5 O -0.59 -23.71 14.84 -4.04 -0.06 -23.77 16 6 N -0.71 -18.87 5.09 -466.37 -2.37 -21.25 16 7 C 0.14 2.97 5.00 86.38 0.43 3.40 16 8 C -0.05 -0.67 2.95 -10.84 -0.03 -0.70 16 9 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 10 C -0.11 -0.89 6.58 31.46 0.21 -0.68 16 11 C -0.07 -0.57 6.76 30.42 0.21 -0.36 16 12 C -0.15 -2.24 6.16 -19.59 -0.12 -2.36 16 13 C -0.07 -0.94 10.17 22.47 0.23 -0.71 16 14 C -0.17 -2.45 10.12 22.35 0.23 -2.22 16 15 C 0.08 1.56 11.18 84.71 0.95 2.50 16 16 N -0.50 -11.61 9.32 -182.98 -1.71 -13.31 16 17 C 0.09 1.78 6.48 42.72 0.28 2.06 16 18 C 0.08 2.99 11.50 85.65 0.99 3.98 16 19 N -0.34 -15.36 12.50 -56.28 -0.70 -16.06 16 20 N -0.34 -16.43 3.56 -336.68 -1.20 -17.63 16 21 C 0.27 14.29 5.78 85.64 0.50 14.79 16 22 C -0.56 -31.56 9.39 25.60 0.24 -31.31 16 23 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 24 C 0.02 1.33 5.46 84.66 0.46 1.79 16 25 N -0.92 -52.10 13.29 21.45 0.28 -51.81 16 26 Si 0.97 43.66 29.54 68.60 2.03 45.68 16 27 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 29 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 30 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 31 H 0.07 2.86 7.71 -2.39 -0.02 2.84 16 32 H 0.10 3.72 6.50 -2.39 -0.02 3.71 16 33 H 0.41 9.88 6.69 -92.71 -0.62 9.26 16 34 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.08 0.73 7.91 -2.38 -0.02 0.71 16 38 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 40 H 0.16 1.06 8.06 -2.91 -0.02 1.03 16 41 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 43 H 0.22 5.83 7.50 -2.91 -0.02 5.81 16 44 H 0.05 2.71 7.64 -2.39 -0.02 2.69 16 45 H 0.03 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 Total: -1.00 -74.01 386.66 2.73 -71.29 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.39 Total: 23.76 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 6.07 Total: 3.10 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -5.70 Total: -120.06 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.06 Total: -23.77 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -74.01 2.73 -71.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898524157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.860 kcal (2) G-P(sol) polarization free energy of solvation -74.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds