Wall clock time and date at job start Tue Mar 31 2020 23:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38274 * 119.99913 * 2 1 4 4 N 1.32424 * 119.82281 * 354.72654 * 3 2 1 5 5 C 1.31852 * 121.77210 * 180.02562 * 4 3 2 6 6 C 1.50698 * 119.38941 * 179.97438 * 5 4 3 7 7 C 1.38374 * 121.21911 * 359.71264 * 5 4 3 8 8 C 1.38340 * 119.50473 * 0.56502 * 7 5 4 9 9 C 1.39976 * 118.36496 * 359.45252 * 8 7 5 10 10 C 1.47426 * 120.60453 * 180.29614 * 9 8 7 11 11 O 1.21605 * 120.00160 * 126.04481 * 10 9 8 12 12 N 1.34780 * 120.00390 * 306.04823 * 10 9 8 13 13 C 1.46500 * 119.99829 * 4.73683 * 12 10 9 14 14 C 1.50692 * 109.47373 * 95.74809 * 13 12 10 15 15 H 1.07999 * 119.99913 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00296 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99679 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00382 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47091 * 59.99651 * 18 16 14 20 20 H 1.48495 * 109.47143 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46921 * 299.99774 * 18 16 14 22 22 C 1.46498 * 120.00194 * 184.73773 * 12 10 9 23 23 C 1.50704 * 109.46962 * 89.99725 * 22 12 10 24 24 C 1.38231 * 119.61816 * 94.73186 * 23 22 12 25 25 C 1.38626 * 119.15964 * 179.75864 * 24 23 22 26 26 C 1.38675 * 118.41957 * 0.49692 * 25 24 23 27 27 C 1.38178 * 119.16219 * 359.73824 * 26 25 24 28 28 N 1.31852 * 119.61680 * 274.99869 * 23 22 12 29 29 H 1.09002 * 109.46860 * 299.99687 * 1 2 3 30 30 H 1.09000 * 109.47093 * 59.99751 * 1 2 3 31 31 H 1.08997 * 109.46957 * 180.02562 * 1 2 3 32 32 H 0.96994 * 120.00782 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47408 * 89.99819 * 6 5 4 34 34 H 1.09004 * 109.47137 * 209.99655 * 6 5 4 35 35 H 1.09005 * 109.47655 * 329.99853 * 6 5 4 36 36 H 1.08001 * 120.24782 * 180.31686 * 7 5 4 37 37 H 1.08000 * 120.81351 * 179.72483 * 8 7 5 38 38 H 1.09001 * 109.46992 * 215.75251 * 13 12 10 39 39 H 1.09010 * 109.46961 * 335.75114 * 13 12 10 40 40 H 0.97000 * 120.00250 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.47084 * 209.99818 * 22 12 10 42 42 H 1.09000 * 109.46972 * 329.99933 * 22 12 10 43 43 H 1.08002 * 120.41637 * 359.97438 * 24 23 22 44 44 H 1.07996 * 120.78650 * 180.26454 * 25 24 23 45 45 H 1.08003 * 120.41544 * 179.71521 * 26 25 24 46 46 H 1.08007 * 119.61328 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1563 1.1975 0.0000 4 7 1.4949 2.3398 -0.1056 5 6 2.1151 3.5034 -0.1102 6 6 1.3090 4.7706 -0.2337 7 6 3.4920 3.5826 0.0016 8 6 4.2349 2.4205 0.1087 9 6 3.5570 1.1958 0.1116 10 6 4.2991 -0.0726 0.2299 11 8 4.0043 -0.8708 1.0987 12 7 5.3044 -0.3475 -0.6247 13 6 5.7284 0.6562 -1.6040 14 6 6.9041 1.4249 -1.0587 15 1 7.2967 1.1892 -0.0806 16 6 7.4788 2.4293 -1.8084 17 7 7.0011 2.7160 -2.9997 18 14 8.9367 3.3818 -1.1327 19 1 10.0587 2.4462 -0.8663 20 1 9.3663 4.3992 -2.1254 21 1 8.5445 4.0568 0.1305 22 6 5.9732 -1.6500 -0.5742 23 6 5.2660 -2.6136 -1.4921 24 6 5.7257 -2.7888 -2.7840 25 6 5.0711 -3.6813 -3.6186 26 6 3.9673 -4.3596 -3.1238 27 6 3.5629 -4.1290 -1.8228 28 7 4.2128 -3.2758 -1.0554 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.9501 -0.8399 -0.0004 33 1 1.0328 5.1238 0.7598 34 1 1.9042 5.5322 -0.7376 35 1 0.4069 4.5726 -0.8126 36 1 3.9835 4.5443 0.0012 37 1 5.3110 2.4575 0.1926 38 1 6.0167 0.1603 -2.5309 39 1 4.9048 1.3428 -1.8003 40 1 7.4056 3.4223 -3.5273 41 1 7.0096 -1.5388 -0.8929 42 1 5.9457 -2.0332 0.4458 43 1 6.5861 -2.2399 -3.1374 44 1 5.4104 -3.8418 -4.6312 45 1 3.4305 -5.0589 -3.7476 46 1 2.7039 -4.6529 -1.4302 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900568708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:04 Heat of formation + Delta-G solvation = 42.878033 kcal Electronic energy + Delta-G solvation = -30150.957393 eV Core-core repulsion = 26233.623041 eV Total energy + Delta-G solvation = -3917.334351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.32022 -39.84374 -38.27934 -35.71781 -34.94592 -33.10094 -32.39708 -32.19321 -31.18590 -30.76832 -27.98193 -27.64250 -26.35253 -25.17234 -23.39846 -22.93761 -22.46771 -21.66519 -21.57438 -19.00095 -17.00231 -16.80154 -16.69829 -16.35118 -16.18940 -15.81931 -15.59155 -15.22329 -14.64256 -14.50899 -14.29797 -14.06321 -13.63104 -13.43718 -13.39917 -13.12025 -12.92615 -12.67653 -12.49868 -12.29435 -12.15143 -12.00817 -11.86205 -11.60314 -11.53989 -11.45140 -11.27304 -10.98818 -10.80766 -10.27737 -9.89059 -9.71121 -9.67780 -9.42941 -9.18923 -9.00623 -8.90072 -8.68869 -8.55565 -7.80404 -7.19931 -6.24515 -4.32993 1.26198 1.48102 1.55013 2.10824 3.19540 3.25686 3.27618 3.40737 3.64675 3.76111 4.21596 4.28162 4.45075 4.57039 4.80750 4.95546 4.99108 5.06472 5.22416 5.31999 5.34458 5.40134 5.47059 5.65728 5.75508 5.76987 5.79929 5.82985 5.84800 5.93553 5.99734 6.01409 6.03836 6.22377 6.31377 6.34138 6.38928 6.66017 6.68910 6.88622 6.89128 7.15426 7.18986 7.47928 7.58575 7.68656 7.78905 7.98720 8.23050 8.31027 8.65158 8.72539 8.98819 9.34302 10.81324 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007262 B = 0.006004 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3854.939152 B = 4662.475242 C = 7585.331824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.722 5.722 3 C 0.438 3.562 4 N -0.553 5.553 5 C 0.180 3.820 6 C -0.100 4.100 7 C -0.239 4.239 8 C 0.024 3.976 9 C -0.246 4.246 10 C 0.572 3.428 11 O -0.553 6.553 12 N -0.585 5.585 13 C 0.235 3.765 14 C -0.544 4.544 15 H 0.064 0.936 16 C 0.071 3.929 17 N -0.883 5.883 18 Si 0.893 3.107 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.167 3.833 23 C 0.121 3.879 24 C -0.154 4.154 25 C -0.080 4.080 26 C -0.181 4.181 27 C 0.091 3.909 28 N -0.462 5.462 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.415 0.585 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.129 0.871 37 H 0.165 0.835 38 H 0.031 0.969 39 H 0.045 0.955 40 H 0.267 0.733 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.138 0.862 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.603 -5.505 -0.364 9.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.355 5.355 3 C 0.201 3.799 4 N -0.272 5.272 5 C 0.041 3.959 6 C -0.158 4.158 7 C -0.262 4.262 8 C -0.002 4.002 9 C -0.256 4.256 10 C 0.360 3.640 11 O -0.433 6.433 12 N -0.315 5.315 13 C 0.115 3.885 14 C -0.582 4.582 15 H 0.082 0.918 16 C -0.134 4.134 17 N -0.520 5.520 18 Si 0.720 3.280 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.199 1.199 22 C 0.042 3.958 23 C -0.019 4.019 24 C -0.174 4.174 25 C -0.106 4.106 26 C -0.201 4.201 27 C -0.067 4.067 28 N -0.171 5.171 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.253 0.747 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.147 0.853 37 H 0.182 0.818 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.115 0.885 42 H 0.111 0.889 43 H 0.156 0.844 44 H 0.149 0.851 45 H 0.146 0.854 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.107 -5.677 0.694 10.754 hybrid contribution 2.246 0.158 -0.917 2.432 sum -6.861 -5.518 -0.223 8.808 Atomic orbital electron populations 1.21352 0.79974 1.00953 1.01534 1.44220 1.06276 1.05119 1.79904 1.18021 0.86616 0.86475 0.88818 1.66960 1.39779 0.96906 1.23605 1.20963 0.91574 0.92277 0.91093 1.20692 0.99732 0.92838 1.02522 1.21536 0.93998 0.99467 1.11205 1.22202 1.02284 0.89811 0.85864 1.20041 0.92596 0.95362 1.17612 1.17982 0.79714 0.85305 0.81023 1.90716 1.68042 1.49859 1.34659 1.48084 1.33398 1.14246 1.35736 1.19542 0.95967 0.86119 0.86824 1.21423 1.15171 1.18074 1.03568 0.91825 1.24926 0.97010 0.96788 0.94664 1.69919 1.40878 1.30801 1.10380 0.86635 0.82746 0.79723 0.78916 1.20062 1.21123 1.19861 1.20135 0.94997 0.81565 0.99065 1.21901 0.92206 0.94476 0.93272 1.22133 1.01877 0.98842 0.94562 1.21553 0.94641 0.94689 0.99744 1.22084 0.98534 1.01963 0.97567 1.22746 0.98388 0.94827 0.90723 1.67624 1.06445 1.05628 1.37411 0.93006 0.92854 0.91725 0.74713 0.90725 0.90682 0.90947 0.85261 0.81816 0.95081 0.93736 0.92355 0.88484 0.88943 0.84403 0.85134 0.85353 0.83301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.48 10.71 59.85 0.64 2.12 16 2 N -0.72 -12.91 5.70 -67.02 -0.38 -13.29 16 3 C 0.44 8.76 7.48 -155.18 -1.16 7.60 16 4 N -0.55 -10.40 9.46 -8.44 -0.08 -10.48 16 5 C 0.18 3.11 6.78 -82.53 -0.56 2.55 16 6 C -0.10 -1.27 10.16 36.00 0.37 -0.91 16 7 C -0.24 -4.38 9.71 -39.49 -0.38 -4.76 16 8 C 0.02 0.49 7.81 -38.89 -0.30 0.19 16 9 C -0.25 -5.23 4.75 -104.65 -0.50 -5.73 16 10 C 0.57 12.50 6.46 -12.52 -0.08 12.42 16 11 O -0.55 -12.77 15.53 5.27 0.08 -12.68 16 12 N -0.58 -12.34 2.44 -177.70 -0.43 -12.78 16 13 C 0.24 5.45 4.68 -5.20 -0.02 5.43 16 14 C -0.54 -13.22 7.06 -34.44 -0.24 -13.46 16 15 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 16 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 17 N -0.88 -23.16 13.29 55.43 0.74 -22.42 16 18 Si 0.89 19.46 29.54 -169.99 -5.02 14.44 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 C 0.17 3.11 5.77 -5.19 -0.03 3.08 16 23 C 0.12 2.09 6.36 -82.58 -0.53 1.56 16 24 C -0.15 -2.35 9.72 -39.44 -0.38 -2.73 16 25 C -0.08 -1.03 10.18 -39.28 -0.40 -1.43 16 26 C -0.18 -2.19 10.11 -39.44 -0.40 -2.59 16 27 C 0.09 1.26 11.18 -17.55 -0.20 1.06 16 28 N -0.46 -7.99 10.27 -9.47 -0.10 -8.09 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.42 7.79 6.96 -40.82 -0.28 7.51 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.13 2.08 8.06 -52.49 -0.42 1.66 16 37 H 0.16 3.63 5.47 -52.49 -0.29 3.34 16 38 H 0.03 0.76 8.11 -51.93 -0.42 0.33 16 39 H 0.04 1.13 5.66 -51.92 -0.29 0.83 16 40 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 41 H 0.10 1.69 7.97 -51.93 -0.41 1.28 16 42 H 0.09 1.78 7.36 -51.93 -0.38 1.39 16 43 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 44 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 46 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 388.66 15.07 5.86 5.86 Total: -1.00 -29.97 388.66 -9.89 -39.86 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -6.28 Total: 13.51 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: -4.28 Total: 6.07 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: -0.26 Total: -67.06 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.08 Total: -12.68 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.97 -9.89 -39.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900568708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.737 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds