Wall clock time and date at job start Tue Mar 31 2020 23:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38274 * 119.99913 * 2 1 4 4 N 1.32424 * 119.82281 * 354.72654 * 3 2 1 5 5 C 1.31852 * 121.77210 * 180.02562 * 4 3 2 6 6 C 1.50698 * 119.38941 * 179.97438 * 5 4 3 7 7 C 1.38374 * 121.21911 * 359.71264 * 5 4 3 8 8 C 1.38340 * 119.50473 * 0.56502 * 7 5 4 9 9 C 1.39976 * 118.36496 * 359.45252 * 8 7 5 10 10 C 1.47426 * 120.60453 * 180.29614 * 9 8 7 11 11 O 1.21605 * 120.00160 * 126.04481 * 10 9 8 12 12 N 1.34780 * 120.00390 * 306.04823 * 10 9 8 13 13 C 1.46500 * 119.99829 * 4.73683 * 12 10 9 14 14 C 1.50692 * 109.47373 * 95.74809 * 13 12 10 15 15 H 1.07999 * 119.99913 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00296 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99679 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00382 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47091 * 59.99651 * 18 16 14 20 20 H 1.48495 * 109.47143 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46921 * 299.99774 * 18 16 14 22 22 C 1.46498 * 120.00194 * 184.73773 * 12 10 9 23 23 C 1.50704 * 109.46962 * 89.99725 * 22 12 10 24 24 C 1.38231 * 119.61816 * 94.73186 * 23 22 12 25 25 C 1.38626 * 119.15964 * 179.75864 * 24 23 22 26 26 C 1.38675 * 118.41957 * 0.49692 * 25 24 23 27 27 C 1.38178 * 119.16219 * 359.73824 * 26 25 24 28 28 N 1.31852 * 119.61680 * 274.99869 * 23 22 12 29 29 H 1.09002 * 109.46860 * 299.99687 * 1 2 3 30 30 H 1.09000 * 109.47093 * 59.99751 * 1 2 3 31 31 H 1.08997 * 109.46957 * 180.02562 * 1 2 3 32 32 H 0.96994 * 120.00782 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47408 * 89.99819 * 6 5 4 34 34 H 1.09004 * 109.47137 * 209.99655 * 6 5 4 35 35 H 1.09005 * 109.47655 * 329.99853 * 6 5 4 36 36 H 1.08001 * 120.24782 * 180.31686 * 7 5 4 37 37 H 1.08000 * 120.81351 * 179.72483 * 8 7 5 38 38 H 1.09001 * 109.46992 * 215.75251 * 13 12 10 39 39 H 1.09010 * 109.46961 * 335.75114 * 13 12 10 40 40 H 0.97000 * 120.00250 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.47084 * 209.99818 * 22 12 10 42 42 H 1.09000 * 109.46972 * 329.99933 * 22 12 10 43 43 H 1.08002 * 120.41637 * 359.97438 * 24 23 22 44 44 H 1.07996 * 120.78650 * 180.26454 * 25 24 23 45 45 H 1.08003 * 120.41544 * 179.71521 * 26 25 24 46 46 H 1.08007 * 119.61328 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1563 1.1975 0.0000 4 7 1.4949 2.3398 -0.1056 5 6 2.1151 3.5034 -0.1102 6 6 1.3090 4.7706 -0.2337 7 6 3.4920 3.5826 0.0016 8 6 4.2349 2.4205 0.1087 9 6 3.5570 1.1958 0.1116 10 6 4.2991 -0.0726 0.2299 11 8 4.0043 -0.8708 1.0987 12 7 5.3044 -0.3475 -0.6247 13 6 5.7284 0.6562 -1.6040 14 6 6.9041 1.4249 -1.0587 15 1 7.2967 1.1892 -0.0806 16 6 7.4788 2.4293 -1.8084 17 7 7.0011 2.7160 -2.9997 18 14 8.9367 3.3818 -1.1327 19 1 10.0587 2.4462 -0.8663 20 1 9.3663 4.3992 -2.1254 21 1 8.5445 4.0568 0.1305 22 6 5.9732 -1.6500 -0.5742 23 6 5.2660 -2.6136 -1.4921 24 6 5.7257 -2.7888 -2.7840 25 6 5.0711 -3.6813 -3.6186 26 6 3.9673 -4.3596 -3.1238 27 6 3.5629 -4.1290 -1.8228 28 7 4.2128 -3.2758 -1.0554 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.9501 -0.8399 -0.0004 33 1 1.0328 5.1238 0.7598 34 1 1.9042 5.5322 -0.7376 35 1 0.4069 4.5726 -0.8126 36 1 3.9835 4.5443 0.0012 37 1 5.3110 2.4575 0.1926 38 1 6.0167 0.1603 -2.5309 39 1 4.9048 1.3428 -1.8003 40 1 7.4056 3.4223 -3.5273 41 1 7.0096 -1.5388 -0.8929 42 1 5.9457 -2.0332 0.4458 43 1 6.5861 -2.2399 -3.1374 44 1 5.4104 -3.8418 -4.6312 45 1 3.4305 -5.0589 -3.7476 46 1 2.7039 -4.6529 -1.4302 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900568708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:02 Heat of formation + Delta-G solvation = 25.767413 kcal Electronic energy + Delta-G solvation = -30151.699365 eV Core-core repulsion = 26233.623041 eV Total energy + Delta-G solvation = -3918.076323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.80378 -41.06715 -39.83960 -37.20983 -36.54075 -34.77396 -33.99244 -33.33922 -32.49340 -32.11274 -29.42845 -29.25434 -27.76871 -26.51123 -24.97656 -24.30649 -23.81861 -23.12526 -22.88337 -20.59451 -18.69407 -18.34136 -18.15450 -17.78114 -17.63528 -17.13455 -17.02349 -16.45081 -16.38717 -15.94696 -15.69719 -15.50715 -15.06858 -14.75924 -14.53320 -14.41922 -14.28117 -14.20894 -13.91550 -13.83318 -13.42739 -13.28148 -13.14407 -13.05870 -12.89228 -12.86635 -12.71944 -12.62320 -12.54908 -12.08413 -11.75915 -11.08908 -11.08190 -10.79796 -10.62738 -10.44366 -10.37539 -10.29476 -9.94469 -9.51587 -8.63170 -8.17961 -6.32539 0.05661 0.13215 0.39857 0.58673 1.45136 1.46779 1.53609 1.76694 2.20985 2.29808 2.44845 2.92680 3.00379 3.11570 3.39090 3.48320 3.74209 3.91093 4.01277 4.03209 4.16284 4.20096 4.25890 4.37158 4.48830 4.52068 4.60585 4.62713 4.66661 4.78007 4.85257 4.86238 4.87124 4.89021 4.90053 5.12057 5.18918 5.23593 5.25430 5.28741 5.40231 5.65398 5.70607 5.78061 5.81427 6.05594 6.22071 6.31675 6.51541 6.79380 7.12280 7.17982 7.26282 7.40149 8.87411 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007262 B = 0.006004 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3854.939152 B = 4662.475242 C = 7585.331824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.723 5.723 3 C 0.428 3.572 4 N -0.555 5.555 5 C 0.183 3.817 6 C -0.096 4.096 7 C -0.247 4.247 8 C 0.010 3.990 9 C -0.277 4.277 10 C 0.571 3.429 11 O -0.573 6.573 12 N -0.584 5.584 13 C 0.258 3.742 14 C -0.544 4.544 15 H 0.056 0.944 16 C 0.034 3.966 17 N -0.912 5.912 18 Si 0.950 3.050 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.269 1.269 22 C 0.167 3.833 23 C 0.095 3.905 24 C -0.166 4.166 25 C -0.078 4.078 26 C -0.165 4.165 27 C 0.079 3.921 28 N -0.496 5.496 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.409 0.591 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.150 0.850 37 H 0.143 0.857 38 H 0.016 0.984 39 H 0.023 0.977 40 H 0.268 0.732 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.135 0.865 44 H 0.163 0.837 45 H 0.171 0.829 46 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.925 -5.494 -1.296 10.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.355 5.355 3 C 0.190 3.810 4 N -0.276 5.276 5 C 0.044 3.956 6 C -0.153 4.153 7 C -0.270 4.270 8 C -0.016 4.016 9 C -0.288 4.288 10 C 0.360 3.640 11 O -0.455 6.455 12 N -0.314 5.314 13 C 0.137 3.863 14 C -0.583 4.583 15 H 0.074 0.926 16 C -0.168 4.168 17 N -0.550 5.550 18 Si 0.775 3.225 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.194 1.194 22 C 0.043 3.957 23 C -0.043 4.043 24 C -0.187 4.187 25 C -0.104 4.104 26 C -0.184 4.184 27 C -0.078 4.078 28 N -0.206 5.206 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.245 0.755 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.168 0.832 37 H 0.161 0.839 38 H 0.034 0.966 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.097 0.903 43 H 0.153 0.847 44 H 0.181 0.819 45 H 0.188 0.812 46 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -10.434 -5.687 -0.234 11.885 hybrid contribution 2.559 0.087 -0.654 2.642 sum -7.875 -5.600 -0.888 9.704 Atomic orbital electron populations 1.21555 0.77583 1.03021 1.01644 1.44417 1.07794 1.04188 1.79092 1.18244 0.86431 0.87608 0.88708 1.67127 1.39530 0.96973 1.23928 1.21755 0.91769 0.93477 0.88623 1.20821 0.99559 0.90678 1.04226 1.21798 0.94696 0.99411 1.11064 1.22078 1.01499 0.90920 0.87099 1.20107 0.93550 0.95090 1.20008 1.18141 0.79655 0.85483 0.80692 1.90677 1.68687 1.50696 1.35409 1.48047 1.33415 1.14814 1.35079 1.19104 0.94769 0.85818 0.86566 1.21492 1.15312 1.18292 1.03162 0.92584 1.25537 0.99103 0.97403 0.94754 1.70014 1.42116 1.31427 1.11412 0.85733 0.79869 0.78509 0.78391 1.19806 1.20790 1.19395 1.20156 0.95420 0.81030 0.99045 1.21574 0.93324 0.95477 0.93888 1.22194 1.02350 0.99888 0.94262 1.21966 0.94337 0.93391 1.00732 1.22522 0.97649 1.01253 0.97005 1.23298 0.98783 0.94172 0.91572 1.67528 1.06986 1.06948 1.39097 0.92799 0.92633 0.88791 0.75505 0.88468 0.88772 0.90139 0.83182 0.83934 0.96627 0.95883 0.92277 0.88188 0.90271 0.84703 0.81898 0.81183 0.80685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.80 10.71 127.77 1.37 4.17 16 2 N -0.72 -25.99 5.70 -365.94 -2.09 -28.08 16 3 C 0.43 17.37 7.48 133.64 1.00 18.37 16 4 N -0.56 -20.55 9.46 -180.61 -1.71 -22.26 16 5 C 0.18 6.11 6.78 42.59 0.29 6.40 16 6 C -0.10 -2.15 10.16 71.24 0.72 -1.42 16 7 C -0.25 -9.01 9.71 22.33 0.22 -8.79 16 8 C 0.01 0.42 7.81 22.72 0.18 0.59 16 9 C -0.28 -12.28 4.75 -19.88 -0.09 -12.38 16 10 C 0.57 26.32 6.46 86.66 0.56 26.88 16 11 O -0.57 -27.79 15.53 -4.05 -0.06 -27.85 16 12 N -0.58 -26.11 2.44 -834.39 -2.04 -28.15 16 13 C 0.26 12.58 4.68 85.63 0.40 12.98 16 14 C -0.54 -27.42 7.06 25.60 0.18 -27.24 16 15 H 0.06 2.86 7.81 -2.91 -0.02 2.84 16 16 C 0.03 1.70 5.46 84.66 0.46 2.17 16 17 N -0.91 -48.61 13.29 21.45 0.28 -48.32 16 18 Si 0.95 40.19 29.54 68.60 2.03 42.21 16 19 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 C 0.17 6.64 5.77 85.63 0.49 7.14 16 23 C 0.10 3.42 6.36 42.56 0.27 3.69 16 24 C -0.17 -5.12 9.72 22.36 0.22 -4.90 16 25 C -0.08 -1.85 10.18 22.47 0.23 -1.62 16 26 C -0.16 -3.48 10.11 22.36 0.23 -3.25 16 27 C 0.08 2.08 11.18 84.67 0.95 3.03 16 28 N -0.50 -17.39 10.27 -183.88 -1.89 -19.28 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.41 15.67 6.96 -92.71 -0.65 15.02 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.09 1.78 8.07 -2.39 -0.02 1.76 16 35 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.15 4.68 8.06 -2.91 -0.02 4.66 16 37 H 0.14 6.66 5.47 -2.91 -0.02 6.64 16 38 H 0.02 0.80 8.11 -2.39 -0.02 0.78 16 39 H 0.02 1.23 5.66 -2.38 -0.01 1.22 16 40 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 41 H 0.10 3.75 7.97 -2.39 -0.02 3.73 16 42 H 0.08 3.28 7.36 -2.39 -0.02 3.27 16 43 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 44 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 45 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 46 H 0.18 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -67.32 388.66 2.56 -64.76 By element: Atomic # 1 Polarization: 40.80 SS G_CDS: 0.36 Total: 41.16 kcal Atomic # 6 Polarization: 18.14 SS G_CDS: 7.67 Total: 25.80 kcal Atomic # 7 Polarization: -138.65 SS G_CDS: -7.43 Total: -146.08 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.06 Total: -27.85 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.21 kcal Total: -67.32 2.56 -64.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900568708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.526 kcal (2) G-P(sol) polarization free energy of solvation -67.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds