Wall clock time and date at job start Tue Mar 31 2020 23:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39868 * 126.04331 * 2 1 4 4 N 1.30840 * 108.20504 * 179.73744 * 3 2 1 5 5 N 1.40077 * 108.20300 * 0.40487 * 4 3 2 6 6 C 1.46499 * 126.03855 * 179.85326 * 5 4 3 7 7 C 1.50704 * 109.47114 * 304.68964 * 6 5 4 8 8 O 1.21282 * 119.99972 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99976 * 179.97438 * 7 6 5 10 10 C 1.46509 * 119.99992 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.87608 * 37.06006 * 10 9 7 12 12 C 1.54346 * 110.82418 * 273.55079 * 10 9 7 13 13 C 1.51376 * 105.16602 * 268.11918 * 12 10 9 14 14 C 1.38501 * 130.38966 * 162.83709 * 13 12 10 15 15 C 1.38104 * 120.21490 * 179.97438 * 14 13 12 16 16 C 1.38255 * 119.93360 * 0.02562 * 15 14 13 17 17 C 1.38105 * 119.93360 * 359.97438 * 16 15 14 18 18 C 1.38213 * 109.76044 * 342.81629 * 13 12 10 19 19 C 1.51369 * 109.76141 * 359.97438 * 18 13 12 20 20 H 1.08994 * 110.30553 * 136.11172 * 19 18 13 21 21 N 1.46498 * 110.30441 * 258.17519 * 19 18 13 22 22 C 1.36934 * 119.99759 * 273.54367 * 21 19 18 23 23 H 1.08007 * 120.00210 * 0.02562 * 22 21 19 24 24 C 1.38810 * 120.00111 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00303 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00166 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47071 * 90.00103 * 26 24 22 28 28 H 1.48499 * 109.47159 * 209.99945 * 26 24 22 29 29 H 1.48498 * 109.46835 * 329.99862 * 26 24 22 30 30 C 1.34949 * 107.92644 * 359.58872 * 5 4 3 31 31 H 1.09006 * 109.47241 * 270.00550 * 1 2 3 32 32 H 1.09001 * 109.46700 * 29.99959 * 1 2 3 33 33 H 1.08990 * 109.47412 * 149.99872 * 1 2 3 34 34 H 1.08005 * 125.89926 * 359.97438 * 3 2 1 35 35 H 1.09002 * 109.47306 * 184.69151 * 6 5 4 36 36 H 1.08994 * 109.47300 * 64.69090 * 6 5 4 37 37 H 0.97005 * 120.00148 * 0.02562 * 9 7 6 38 38 H 1.08993 * 110.30441 * 149.19648 * 12 10 9 39 39 H 1.08999 * 110.30290 * 27.03845 * 12 10 9 40 40 H 1.07998 * 119.89009 * 359.95395 * 14 13 12 41 41 H 1.07995 * 120.03522 * 179.97438 * 15 14 13 42 42 H 1.08005 * 120.03138 * 180.02562 * 16 15 14 43 43 H 1.08003 * 119.88898 * 179.97438 * 17 16 15 44 44 H 0.97002 * 120.00609 * 93.54868 * 21 19 18 45 45 H 0.96993 * 120.00438 * 180.02562 * 25 24 22 46 46 H 1.08005 * 126.12865 * 180.26427 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1309 0.0000 4 7 3.5754 0.7301 0.0057 5 7 3.5844 -0.6706 0.0001 6 6 4.7745 -1.5249 0.0006 7 6 5.6580 -1.1563 -1.1633 8 8 5.3260 -0.2677 -1.9191 9 7 6.8171 -1.8139 -1.3643 10 6 7.6757 -1.4559 -2.4961 11 1 7.6643 -0.3795 -2.6671 12 6 7.2514 -2.2182 -3.7694 13 6 8.0886 -3.4793 -3.7734 14 6 7.9256 -4.6626 -4.4746 15 6 8.8301 -5.6941 -4.3170 16 6 9.9020 -5.5464 -3.4564 17 6 10.0662 -4.3673 -2.7563 18 6 9.1604 -3.3315 -2.9134 19 6 9.1173 -1.9606 -2.2729 20 1 9.3309 -2.0344 -1.2066 21 7 10.0783 -1.0657 -2.9223 22 6 11.3803 -1.0360 -2.4992 23 1 11.6989 -1.6727 -1.6870 24 6 12.2908 -0.1877 -3.1141 25 7 11.9028 0.5879 -4.1043 26 14 14.0671 -0.1477 -2.5374 27 1 14.8581 -1.1455 -3.3015 28 1 14.6303 1.2078 -2.7625 29 1 14.1249 -0.4736 -1.0898 30 6 2.3031 -1.0942 0.0001 31 1 -0.3634 0.0001 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3634 -0.8899 -0.5138 34 1 1.9952 2.1578 -0.0004 35 1 4.4727 -2.5685 -0.0886 36 1 5.3228 -1.3837 0.9320 37 1 7.0825 -2.5249 -0.7600 38 1 7.4632 -1.6208 -4.6561 39 1 6.1914 -2.4681 -3.7250 40 1 7.0881 -4.7789 -5.1465 41 1 8.7000 -6.6156 -4.8649 42 1 10.6106 -6.3519 -3.3322 43 1 10.9036 -4.2527 -2.0839 44 1 9.7924 -0.4940 -3.6520 45 1 12.5391 1.1804 -4.5342 46 1 1.9723 -2.1223 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960252266.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:45 Heat of formation + Delta-G solvation = 91.247428 kcal Electronic energy + Delta-G solvation = -28648.568392 eV Core-core repulsion = 24733.331495 eV Total energy + Delta-G solvation = -3915.236897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.34795 -40.25644 -38.95918 -36.21555 -34.06823 -33.81212 -32.64186 -31.66955 -31.19720 -29.80378 -29.03309 -27.58425 -26.17637 -25.62347 -23.36748 -22.39827 -21.53666 -20.72330 -20.46942 -20.17000 -19.87595 -17.59814 -17.30171 -16.98047 -16.13154 -15.73422 -15.50152 -14.99306 -14.75026 -14.49282 -14.44146 -14.34695 -13.78969 -13.51323 -13.44188 -13.22379 -13.09629 -13.05314 -12.94734 -12.76241 -12.66521 -12.34844 -12.04577 -11.62988 -11.43044 -11.13409 -11.05184 -10.86411 -10.63343 -10.56392 -10.43387 -10.17379 -10.09130 -9.86429 -9.39152 -9.10289 -8.96801 -8.42240 -8.38458 -8.14562 -7.13528 -5.87332 -3.18151 1.76872 1.77751 1.83111 2.26562 2.56413 2.75912 3.14413 3.37820 3.42712 3.44795 4.17114 4.32452 4.51082 4.55042 4.63237 4.75553 4.81209 4.92355 5.02520 5.13408 5.29416 5.31289 5.38304 5.44586 5.47463 5.53024 5.55500 5.68769 5.70325 5.83828 5.85241 5.94292 6.02193 6.05707 6.14481 6.20023 6.30366 6.43852 6.55102 6.57907 6.70041 6.83397 6.86123 6.92362 7.17602 7.42742 7.50655 7.59079 7.65853 8.21255 8.28461 9.40511 9.91227 10.26587 11.34336 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011559 B = 0.002851 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.877814 B = 9820.080359 C =11574.599527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.242 4.242 3 C 0.042 3.958 4 N -0.260 5.260 5 N -0.361 5.361 6 C 0.116 3.884 7 C 0.499 3.501 8 O -0.508 6.508 9 N -0.711 5.711 10 C 0.139 3.861 11 H 0.108 0.892 12 C -0.085 4.085 13 C -0.097 4.097 14 C -0.115 4.115 15 C -0.132 4.132 16 C -0.128 4.128 17 C -0.090 4.090 18 C -0.093 4.093 19 C 0.209 3.791 20 H 0.062 0.938 21 N -0.703 5.703 22 C -0.245 4.245 23 H 0.072 0.928 24 C -0.006 4.006 25 N -0.926 5.926 26 Si 0.909 3.091 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.281 1.281 30 C 0.049 3.951 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.181 0.819 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.400 0.600 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.388 0.612 45 H 0.258 0.742 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.008 -10.551 8.342 23.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.253 4.253 3 C -0.146 4.146 4 N -0.080 5.080 5 N -0.143 5.143 6 C -0.010 4.010 7 C 0.282 3.718 8 O -0.381 6.381 9 N -0.363 5.363 10 C 0.034 3.966 11 H 0.126 0.874 12 C -0.123 4.123 13 C -0.097 4.097 14 C -0.133 4.133 15 C -0.150 4.150 16 C -0.146 4.146 17 C -0.109 4.109 18 C -0.097 4.097 19 C 0.097 3.903 20 H 0.080 0.920 21 N -0.342 5.342 22 C -0.376 4.376 23 H 0.090 0.910 24 C -0.203 4.203 25 N -0.573 5.573 26 Si 0.739 3.261 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.206 1.206 30 C -0.095 4.095 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.198 0.802 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.234 0.766 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.223 0.777 45 H 0.068 0.932 46 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -17.692 -9.558 7.870 21.594 hybrid contribution 0.455 -0.621 0.006 0.770 sum -17.236 -10.178 7.876 21.511 Atomic orbital electron populations 1.20026 0.89405 1.02077 1.01299 1.20112 0.96973 0.91945 1.16302 1.23840 0.90059 0.99801 1.00877 1.77543 1.20850 0.88087 1.21525 1.47940 1.04315 1.04889 1.57204 1.21481 0.85525 0.94178 0.99794 1.20426 0.82166 0.82824 0.86409 1.90808 1.71942 1.29307 1.46038 1.45811 1.21102 1.38616 1.30821 1.21885 0.89591 1.00652 0.84480 0.87437 1.21393 0.98522 0.93665 0.98742 1.20522 0.97137 0.94627 0.97456 1.20480 0.99720 0.93051 1.00046 1.20850 0.95750 0.98568 0.99838 1.20975 0.98082 0.97712 0.97812 1.20618 0.98262 0.92279 0.99731 1.21738 0.93576 0.96114 0.98297 1.19806 0.87749 0.86215 0.96505 0.91980 1.42269 1.06378 1.44573 1.41018 1.19160 0.85361 1.19183 1.13902 0.90968 1.24780 0.98358 0.98926 0.98269 1.69659 1.34424 1.27732 1.25450 0.86176 0.84806 0.77014 0.78081 1.21583 1.21631 1.20610 1.22267 0.83852 0.99991 1.03422 0.92297 0.91903 0.92324 0.80239 0.85860 0.86752 0.76608 0.89403 0.91212 0.87219 0.86806 0.86703 0.86538 0.77722 0.93225 0.81171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.37 36.00 0.37 -0.12 16 2 C -0.24 -2.50 6.10 -105.06 -0.64 -3.14 16 3 C 0.04 0.51 11.96 -17.36 -0.21 0.30 16 4 N -0.26 -3.93 11.66 30.63 0.36 -3.57 16 5 N -0.36 -4.40 3.39 -62.55 -0.21 -4.61 16 6 C 0.12 1.08 6.99 -5.19 -0.04 1.05 16 7 C 0.50 6.81 7.86 -10.99 -0.09 6.73 16 8 O -0.51 -9.51 15.46 5.56 0.09 -9.42 16 9 N -0.71 -9.07 5.14 -52.42 -0.27 -9.34 16 10 C 0.14 2.30 2.94 -66.51 -0.20 2.11 16 11 H 0.11 2.10 7.63 -51.93 -0.40 1.71 16 12 C -0.08 -1.36 6.48 -26.85 -0.17 -1.53 16 13 C -0.10 -1.58 6.14 -104.20 -0.64 -2.22 16 14 C -0.11 -1.70 10.04 -39.53 -0.40 -2.10 16 15 C -0.13 -1.85 10.05 -39.62 -0.40 -2.25 16 16 C -0.13 -1.89 10.05 -39.62 -0.40 -2.29 16 17 C -0.09 -1.53 10.04 -39.54 -0.40 -1.93 16 18 C -0.09 -1.66 5.76 -104.21 -0.60 -2.26 16 19 C 0.21 3.91 3.10 -68.04 -0.21 3.70 16 20 H 0.06 1.14 8.01 -51.93 -0.42 0.72 16 21 N -0.70 -16.93 5.15 -53.53 -0.28 -17.21 16 22 C -0.25 -6.52 9.96 -15.06 -0.15 -6.67 16 23 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 24 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 25 N -0.93 -27.53 13.06 55.49 0.72 -26.80 16 26 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 30 C 0.05 0.49 11.36 -17.22 -0.20 0.29 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.18 1.69 8.06 -52.48 -0.42 1.27 16 35 H 0.12 0.63 8.07 -51.93 -0.42 0.21 16 36 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.40 3.88 8.58 -40.82 -0.35 3.53 16 38 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 40 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 43 H 0.12 1.96 8.06 -52.48 -0.42 1.54 16 44 H 0.39 10.14 7.79 -40.82 -0.32 9.82 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.17 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 392.79 15.07 5.92 5.92 Total: -1.00 -35.72 392.79 -9.66 -45.38 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -6.52 Total: 13.35 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -4.45 Total: -10.61 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.32 Total: -61.54 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.72 -9.66 -45.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960252266.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.632 kcal (2) G-P(sol) polarization free energy of solvation -35.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds