Wall clock time and date at job start Tue Mar 31 2020 23:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39868 * 126.04331 * 2 1 4 4 N 1.30840 * 108.20504 * 179.73744 * 3 2 1 5 5 N 1.40077 * 108.20300 * 0.40487 * 4 3 2 6 6 C 1.46499 * 126.03855 * 179.85326 * 5 4 3 7 7 C 1.50704 * 109.47114 * 304.68964 * 6 5 4 8 8 O 1.21282 * 119.99972 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99976 * 179.97438 * 7 6 5 10 10 C 1.46509 * 119.99992 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.87608 * 37.06006 * 10 9 7 12 12 C 1.54346 * 110.82418 * 273.55079 * 10 9 7 13 13 C 1.51376 * 105.16602 * 268.11918 * 12 10 9 14 14 C 1.38501 * 130.38966 * 162.83709 * 13 12 10 15 15 C 1.38104 * 120.21490 * 179.97438 * 14 13 12 16 16 C 1.38255 * 119.93360 * 0.02562 * 15 14 13 17 17 C 1.38105 * 119.93360 * 359.97438 * 16 15 14 18 18 C 1.38213 * 109.76044 * 342.81629 * 13 12 10 19 19 C 1.51369 * 109.76141 * 359.97438 * 18 13 12 20 20 H 1.08994 * 110.30553 * 136.11172 * 19 18 13 21 21 N 1.46498 * 110.30441 * 258.17519 * 19 18 13 22 22 C 1.36934 * 119.99759 * 273.54367 * 21 19 18 23 23 H 1.08007 * 120.00210 * 0.02562 * 22 21 19 24 24 C 1.38810 * 120.00111 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00303 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00166 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47071 * 90.00103 * 26 24 22 28 28 H 1.48499 * 109.47159 * 209.99945 * 26 24 22 29 29 H 1.48498 * 109.46835 * 329.99862 * 26 24 22 30 30 C 1.34949 * 107.92644 * 359.58872 * 5 4 3 31 31 H 1.09006 * 109.47241 * 270.00550 * 1 2 3 32 32 H 1.09001 * 109.46700 * 29.99959 * 1 2 3 33 33 H 1.08990 * 109.47412 * 149.99872 * 1 2 3 34 34 H 1.08005 * 125.89926 * 359.97438 * 3 2 1 35 35 H 1.09002 * 109.47306 * 184.69151 * 6 5 4 36 36 H 1.08994 * 109.47300 * 64.69090 * 6 5 4 37 37 H 0.97005 * 120.00148 * 0.02562 * 9 7 6 38 38 H 1.08993 * 110.30441 * 149.19648 * 12 10 9 39 39 H 1.08999 * 110.30290 * 27.03845 * 12 10 9 40 40 H 1.07998 * 119.89009 * 359.95395 * 14 13 12 41 41 H 1.07995 * 120.03522 * 179.97438 * 15 14 13 42 42 H 1.08005 * 120.03138 * 180.02562 * 16 15 14 43 43 H 1.08003 * 119.88898 * 179.97438 * 17 16 15 44 44 H 0.97002 * 120.00609 * 93.54868 * 21 19 18 45 45 H 0.96993 * 120.00438 * 180.02562 * 25 24 22 46 46 H 1.08005 * 126.12865 * 180.26427 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1309 0.0000 4 7 3.5754 0.7301 0.0057 5 7 3.5844 -0.6706 0.0001 6 6 4.7745 -1.5249 0.0006 7 6 5.6580 -1.1563 -1.1633 8 8 5.3260 -0.2677 -1.9191 9 7 6.8171 -1.8139 -1.3643 10 6 7.6757 -1.4559 -2.4961 11 1 7.6643 -0.3795 -2.6671 12 6 7.2514 -2.2182 -3.7694 13 6 8.0886 -3.4793 -3.7734 14 6 7.9256 -4.6626 -4.4746 15 6 8.8301 -5.6941 -4.3170 16 6 9.9020 -5.5464 -3.4564 17 6 10.0662 -4.3673 -2.7563 18 6 9.1604 -3.3315 -2.9134 19 6 9.1173 -1.9606 -2.2729 20 1 9.3309 -2.0344 -1.2066 21 7 10.0783 -1.0657 -2.9223 22 6 11.3803 -1.0360 -2.4992 23 1 11.6989 -1.6727 -1.6870 24 6 12.2908 -0.1877 -3.1141 25 7 11.9028 0.5879 -4.1043 26 14 14.0671 -0.1477 -2.5374 27 1 14.8581 -1.1455 -3.3015 28 1 14.6303 1.2078 -2.7625 29 1 14.1249 -0.4736 -1.0898 30 6 2.3031 -1.0942 0.0001 31 1 -0.3634 0.0001 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3634 -0.8899 -0.5138 34 1 1.9952 2.1578 -0.0004 35 1 4.4727 -2.5685 -0.0886 36 1 5.3228 -1.3837 0.9320 37 1 7.0825 -2.5249 -0.7600 38 1 7.4632 -1.6208 -4.6561 39 1 6.1914 -2.4681 -3.7250 40 1 7.0881 -4.7789 -5.1465 41 1 8.7000 -6.6156 -4.8649 42 1 10.6106 -6.3519 -3.3322 43 1 10.9036 -4.2527 -2.0839 44 1 9.7924 -0.4940 -3.6520 45 1 12.5391 1.1804 -4.5342 46 1 1.9723 -2.1223 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960252266.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:44 Heat of formation + Delta-G solvation = 67.336119 kcal Electronic energy + Delta-G solvation = -28649.605264 eV Core-core repulsion = 24733.331495 eV Total energy + Delta-G solvation = -3916.273769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.19069 -41.50948 -40.13700 -37.55777 -35.77028 -34.68637 -33.96276 -32.79557 -32.43848 -31.34599 -30.00112 -28.65011 -27.72573 -26.45383 -25.17500 -23.59147 -22.62169 -21.80292 -21.53947 -21.34144 -20.95772 -19.38910 -18.37825 -17.97347 -17.39576 -16.95688 -16.66452 -16.43454 -16.06985 -15.77205 -15.50855 -15.39508 -15.19632 -14.98185 -14.68914 -14.27865 -14.23416 -14.13461 -13.96237 -13.89010 -13.51379 -13.14545 -13.12064 -12.92573 -12.81502 -12.66914 -12.64859 -12.31258 -12.25552 -12.01646 -11.86462 -11.66521 -11.41494 -11.18103 -11.01405 -10.33290 -10.21845 -9.63264 -9.42965 -9.19360 -9.10091 -7.98367 -5.29151 0.54488 0.58940 0.96149 1.44652 1.46599 1.49860 1.52325 1.54749 1.94354 2.10013 2.53480 2.93828 3.34345 3.37191 3.55561 3.71328 3.75277 4.02352 4.03950 4.09721 4.16103 4.16808 4.22079 4.26229 4.31242 4.45519 4.52837 4.63745 4.66747 4.72656 4.80033 4.89121 4.95092 4.96010 5.05561 5.19373 5.28382 5.29946 5.36108 5.40957 5.47964 5.64823 5.70690 5.77440 5.88869 6.14280 6.19389 6.23504 6.49204 6.81754 7.17711 7.27386 7.96241 8.20910 9.24791 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011559 B = 0.002851 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.877814 B = 9820.080359 C =11574.599527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.256 4.256 3 C 0.028 3.972 4 N -0.324 5.324 5 N -0.372 5.372 6 C 0.119 3.881 7 C 0.496 3.504 8 O -0.565 6.565 9 N -0.697 5.697 10 C 0.151 3.849 11 H 0.068 0.932 12 C -0.076 4.076 13 C -0.103 4.103 14 C -0.117 4.117 15 C -0.122 4.122 16 C -0.127 4.127 17 C -0.109 4.109 18 C -0.113 4.113 19 C 0.209 3.791 20 H 0.065 0.935 21 N -0.720 5.720 22 C -0.235 4.235 23 H 0.081 0.919 24 C -0.074 4.074 25 N -0.969 5.969 26 Si 0.972 3.028 27 H -0.287 1.287 28 H -0.299 1.299 29 H -0.265 1.265 30 C 0.054 3.946 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.192 0.808 35 H 0.176 0.824 36 H 0.136 0.864 37 H 0.418 0.582 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.134 0.866 41 H 0.150 0.850 42 H 0.142 0.858 43 H 0.110 0.890 44 H 0.372 0.628 45 H 0.251 0.749 46 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.402 -14.503 9.421 26.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.267 4.267 3 C -0.159 4.159 4 N -0.145 5.145 5 N -0.155 5.155 6 C -0.005 4.005 7 C 0.282 3.718 8 O -0.442 6.442 9 N -0.350 5.350 10 C 0.045 3.955 11 H 0.087 0.913 12 C -0.114 4.114 13 C -0.104 4.104 14 C -0.135 4.135 15 C -0.140 4.140 16 C -0.144 4.144 17 C -0.128 4.128 18 C -0.116 4.116 19 C 0.099 3.901 20 H 0.083 0.917 21 N -0.358 5.358 22 C -0.366 4.366 23 H 0.099 0.901 24 C -0.266 4.266 25 N -0.619 5.619 26 Si 0.801 3.199 27 H -0.214 1.214 28 H -0.226 1.226 29 H -0.190 1.190 30 C -0.090 4.090 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.209 0.791 35 H 0.194 0.806 36 H 0.154 0.846 37 H 0.255 0.745 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.152 0.848 41 H 0.168 0.832 42 H 0.160 0.840 43 H 0.129 0.871 44 H 0.204 0.796 45 H 0.060 0.940 46 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -19.112 -13.592 9.022 25.128 hybrid contribution 0.777 0.488 -0.305 0.967 sum -18.336 -13.104 8.718 24.164 Atomic orbital electron populations 1.20062 0.87253 1.02834 1.02212 1.20564 0.98558 0.91419 1.16164 1.24258 0.90043 1.01268 1.00313 1.77449 1.22548 0.90404 1.24097 1.48158 1.05755 1.04178 1.57383 1.21782 0.84510 0.96213 0.98019 1.21278 0.82108 0.81543 0.86845 1.90792 1.73225 1.31760 1.48406 1.45600 1.20502 1.38938 1.29975 1.21398 0.89295 0.98461 0.86386 0.91350 1.21254 0.99293 0.93437 0.97456 1.20576 0.96816 0.95225 0.97745 1.20831 1.00655 0.92339 0.99694 1.21295 0.94450 0.99467 0.98814 1.21308 0.98782 0.97379 0.96980 1.20773 0.98106 0.93270 1.00641 1.21477 0.95107 0.95660 0.99398 1.19915 0.87689 0.86368 0.96111 0.91740 1.42418 1.06629 1.45903 1.40896 1.19544 0.86310 1.17719 1.13024 0.90077 1.25585 1.02371 0.99523 0.99118 1.69829 1.35345 1.29326 1.27449 0.85160 0.80136 0.76289 0.78317 1.21420 1.22562 1.18969 1.23004 0.82786 1.01802 1.01403 0.91229 0.91810 0.90925 0.79132 0.80649 0.84614 0.74469 0.91340 0.89889 0.84803 0.83213 0.83984 0.87149 0.79555 0.94042 0.76925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.37 71.24 0.74 -0.06 16 2 C -0.26 -4.93 6.10 -20.15 -0.12 -5.05 16 3 C 0.03 0.69 11.96 85.24 1.02 1.71 16 4 N -0.32 -10.01 11.66 -57.02 -0.66 -10.67 16 5 N -0.37 -8.55 3.39 -351.79 -1.19 -9.74 16 6 C 0.12 1.94 6.99 85.63 0.60 2.54 16 7 C 0.50 13.38 7.86 87.66 0.69 14.07 16 8 O -0.56 -21.96 15.46 -3.04 -0.05 -22.01 16 9 N -0.70 -17.47 5.14 -438.16 -2.25 -19.72 16 10 C 0.15 5.20 2.94 45.91 0.13 5.33 16 11 H 0.07 2.91 7.63 -2.39 -0.02 2.89 16 12 C -0.08 -2.46 6.48 30.52 0.20 -2.27 16 13 C -0.10 -3.26 6.14 -19.59 -0.12 -3.38 16 14 C -0.12 -3.12 10.04 22.30 0.22 -2.89 16 15 C -0.12 -2.93 10.05 22.24 0.22 -2.71 16 16 C -0.13 -3.35 10.05 22.24 0.22 -3.13 16 17 C -0.11 -3.57 10.04 22.30 0.22 -3.34 16 18 C -0.11 -3.96 5.76 -19.60 -0.11 -4.08 16 19 C 0.21 8.01 3.10 44.92 0.14 8.15 16 20 H 0.06 2.39 8.01 -2.39 -0.02 2.37 16 21 N -0.72 -36.12 5.15 -323.28 -1.67 -37.79 16 22 C -0.23 -12.73 9.96 84.03 0.84 -11.89 16 23 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 24 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 25 N -0.97 -60.10 13.06 21.65 0.28 -59.81 16 26 Si 0.97 46.02 29.55 68.60 2.03 48.05 16 27 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 28 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 29 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 30 C 0.05 0.94 11.36 83.54 0.95 1.89 16 31 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.19 3.80 8.06 -2.91 -0.02 3.78 16 35 H 0.18 0.96 8.07 -2.39 -0.02 0.94 16 36 H 0.14 1.65 8.14 -2.39 -0.02 1.64 16 37 H 0.42 7.41 8.58 -92.70 -0.80 6.62 16 38 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.08 2.42 8.09 -2.39 -0.02 2.40 16 40 H 0.13 2.90 8.06 -2.91 -0.02 2.87 16 41 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 42 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 43 H 0.11 3.64 8.06 -2.91 -0.02 3.62 16 44 H 0.37 20.70 7.79 -92.71 -0.72 19.97 16 45 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 46 H 0.21 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -83.15 392.79 2.29 -80.86 By element: Atomic # 1 Polarization: 40.22 SS G_CDS: -0.50 Total: 39.71 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 6.31 Total: -8.86 kcal Atomic # 7 Polarization: -132.25 SS G_CDS: -5.50 Total: -137.74 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.05 Total: -22.01 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -83.15 2.29 -80.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960252266.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.193 kcal (2) G-P(sol) polarization free energy of solvation -83.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds