Wall clock time and date at job start Tue Mar 31 2020 23:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38037 * 126.29590 * 2 1 4 4 C 1.47432 * 126.41184 * 0.02562 * 3 2 1 5 5 O 1.21612 * 120.00079 * 359.71031 * 4 3 2 6 6 N 1.34773 * 120.00313 * 179.70956 * 4 3 2 7 7 C 1.46500 * 119.99863 * 179.97438 * 6 4 3 8 8 H 1.08993 * 110.88473 * 31.49160 * 7 6 4 9 9 C 1.54348 * 110.82363 * 267.96777 * 7 6 4 10 10 C 1.51364 * 105.17061 * 215.43127 * 9 7 6 11 11 C 1.38507 * 130.38786 * 197.17380 * 10 9 7 12 12 C 1.38108 * 120.21220 * 180.02562 * 11 10 9 13 13 C 1.38248 * 119.93504 * 359.97438 * 12 11 10 14 14 C 1.38106 * 119.93872 * 359.97438 * 13 12 11 15 15 C 1.38221 * 109.76271 * 17.19241 * 10 9 7 16 16 C 1.51367 * 109.75425 * 359.97438 * 15 10 9 17 17 H 1.09002 * 110.30256 * 101.73694 * 16 15 10 18 18 N 1.46504 * 110.29846 * 223.78968 * 16 15 10 19 19 C 1.36931 * 120.00154 * 272.22230 * 18 16 15 20 20 H 1.08001 * 119.99908 * 0.02562 * 19 18 16 21 21 C 1.38808 * 120.00257 * 180.02562 * 19 18 16 22 22 N 1.31617 * 119.99977 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00264 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46946 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47617 * 119.99662 * 23 21 19 26 26 H 1.48497 * 109.46584 * 239.99633 * 23 21 19 27 27 C 1.41283 * 107.17797 * 179.75965 * 3 2 1 28 28 N 1.30455 * 108.02191 * 0.24017 * 27 3 2 29 29 N 1.34267 * 126.29071 * 180.18173 * 2 1 3 30 30 C 1.46499 * 125.75318 * 359.95544 * 29 2 1 31 31 H 1.08997 * 109.47236 * 90.00122 * 1 2 3 32 32 H 1.08998 * 109.46945 * 209.99703 * 1 2 3 33 33 H 1.08993 * 109.47015 * 329.99967 * 1 2 3 34 34 H 0.96995 * 120.00017 * 0.02562 * 6 4 3 35 35 H 1.08999 * 110.29750 * 96.50702 * 9 7 6 36 36 H 1.08995 * 110.38613 * 334.40127 * 9 7 6 37 37 H 1.07995 * 119.88793 * 0.02562 * 11 10 9 38 38 H 1.07999 * 120.02535 * 179.97438 * 12 11 10 39 39 H 1.08000 * 120.03075 * 180.02562 * 13 12 11 40 40 H 1.07996 * 119.89223 * 180.02562 * 14 13 12 41 41 H 0.97004 * 119.99848 * 92.22944 * 18 16 15 42 42 H 0.96998 * 120.00272 * 180.02562 * 22 21 19 43 43 H 1.08003 * 125.99550 * 180.23972 * 27 3 2 44 44 H 1.08994 * 109.47331 * 270.30796 * 30 29 2 45 45 H 1.09000 * 109.47278 * 30.31306 * 30 29 2 46 46 H 1.09004 * 109.47053 * 150.31059 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1125 0.0000 4 6 1.8858 2.5202 0.0005 5 8 0.6995 2.7878 -0.0043 6 7 2.7999 3.5106 0.0064 7 6 2.3643 4.9094 0.0063 8 1 1.4172 5.0214 0.5339 9 6 2.2570 5.4506 -1.4352 10 6 2.6902 6.8983 -1.3480 11 6 2.5014 7.9464 -2.2335 12 6 2.9940 9.2025 -1.9388 13 6 3.6774 9.4155 -0.7561 14 6 3.8658 8.3719 0.1287 15 6 3.3739 7.1112 -0.1657 16 6 3.4462 5.8211 0.6228 17 1 4.4306 5.3660 0.5138 18 7 3.1572 6.0729 2.0368 19 6 4.1688 6.4235 2.8906 20 1 5.1797 6.5147 2.5214 21 6 3.8951 6.6615 4.2304 22 7 2.6631 6.5508 4.6802 23 14 5.2750 7.1404 5.3949 24 1 6.5566 7.1967 4.6471 25 1 4.9860 8.4727 5.9837 26 1 5.3792 6.1319 6.4799 27 6 3.6590 0.6498 0.0057 28 7 3.6340 -0.6545 0.0036 29 7 2.3017 -1.0822 -0.0034 30 6 1.8500 -2.4758 -0.0069 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5138 34 1 3.7461 3.2973 0.0099 35 1 1.2279 5.3843 -1.7883 36 1 2.9204 4.8965 -2.0991 37 1 1.9673 7.7808 -3.1574 38 1 2.8454 10.0175 -2.6316 39 1 4.0630 10.3972 -0.5238 40 1 4.3994 8.5392 1.0526 41 1 2.2492 5.9912 2.3683 42 1 2.4717 6.7175 5.6164 43 1 4.5449 1.2676 0.0108 44 1 1.7334 -2.8226 1.0198 45 1 0.8937 -2.5466 -0.5252 46 1 2.5870 -3.0953 -0.5181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960255520.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:32 Heat of formation + Delta-G solvation = 81.455018 kcal Electronic energy + Delta-G solvation = -29008.873221 eV Core-core repulsion = 25093.211693 eV Total energy + Delta-G solvation = -3915.661528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.51859 -39.95480 -38.57069 -36.01548 -34.07525 -33.73636 -32.55943 -31.99495 -31.14931 -29.66148 -28.39669 -27.04227 -26.86613 -25.95875 -23.25154 -22.79655 -21.75118 -20.68575 -20.28958 -20.15297 -19.46104 -17.57451 -17.24315 -16.01444 -15.96597 -15.80188 -15.55502 -15.02730 -14.66074 -14.53397 -14.36967 -14.03783 -13.86196 -13.32415 -13.26844 -13.19771 -13.08421 -12.88009 -12.80275 -12.64677 -12.44571 -12.35686 -12.28212 -11.99432 -11.63963 -11.03840 -10.93728 -10.90019 -10.80378 -10.53003 -10.35248 -10.07980 -9.74940 -9.59950 -9.52252 -9.03761 -8.81734 -8.52233 -8.26850 -8.03643 -7.03990 -5.80202 -3.10224 1.47105 1.84813 1.94036 2.16410 2.19678 3.40826 3.46225 3.48991 3.50441 3.66921 4.26929 4.28212 4.44935 4.56162 4.75911 4.81813 4.85587 4.98152 5.07040 5.14749 5.23389 5.39452 5.40130 5.42413 5.45691 5.51571 5.57754 5.61980 5.75173 5.79105 5.92448 5.98594 6.01333 6.18332 6.23676 6.30192 6.33922 6.48102 6.53174 6.69101 6.71585 6.85430 6.97385 7.06907 7.29498 7.44152 7.54055 7.66258 7.87088 8.36019 8.58527 9.48154 10.01967 10.37551 11.41578 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009007 B = 0.003590 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.922506 B = 7797.053975 C =10035.749390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.155 3.845 3 C -0.292 4.292 4 C 0.598 3.402 5 O -0.550 6.550 6 N -0.707 5.707 7 C 0.144 3.856 8 H 0.105 0.895 9 C -0.087 4.087 10 C -0.105 4.105 11 C -0.116 4.116 12 C -0.132 4.132 13 C -0.130 4.130 14 C -0.080 4.080 15 C -0.091 4.091 16 C 0.207 3.793 17 H 0.067 0.933 18 N -0.710 5.710 19 C -0.243 4.243 20 H 0.072 0.928 21 C -0.007 4.007 22 N -0.926 5.926 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.086 3.914 28 N -0.302 5.302 29 N -0.368 5.368 30 C 0.097 3.903 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.398 0.602 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.127 0.873 41 H 0.387 0.613 42 H 0.256 0.744 43 H 0.190 0.810 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.697 -11.822 -14.534 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.023 3.977 3 C -0.306 4.306 4 C 0.386 3.614 5 O -0.429 6.429 6 N -0.356 5.356 7 C 0.039 3.961 8 H 0.123 0.877 9 C -0.125 4.125 10 C -0.106 4.106 11 C -0.134 4.134 12 C -0.150 4.150 13 C -0.148 4.148 14 C -0.098 4.098 15 C -0.095 4.095 16 C 0.095 3.905 17 H 0.085 0.915 18 N -0.350 5.350 19 C -0.374 4.374 20 H 0.090 0.910 21 C -0.204 4.204 22 N -0.573 5.573 23 Si 0.735 3.265 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.219 1.219 27 C -0.101 4.101 28 N -0.121 5.121 29 N -0.148 5.148 30 C -0.044 4.044 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.128 0.872 34 H 0.233 0.767 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.145 0.855 41 H 0.222 0.778 42 H 0.066 0.934 43 H 0.207 0.793 44 H 0.096 0.904 45 H 0.108 0.892 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.712 -12.852 -14.384 19.365 hybrid contribution 0.540 1.002 0.896 1.448 sum -1.172 -11.850 -13.488 17.993 Atomic orbital electron populations 1.20685 0.86074 1.04984 1.03969 1.21517 0.94908 0.86251 0.95059 1.20032 0.92819 0.93698 1.24067 1.17122 0.85488 0.83510 0.75302 1.90718 1.16524 1.84231 1.51426 1.45584 1.09432 1.05448 1.75130 1.21856 0.99903 0.79539 0.94843 0.87709 1.21354 1.01725 0.91882 0.97575 1.20462 0.99767 0.94878 0.95526 1.20460 1.01475 0.92455 0.99051 1.20865 1.00096 0.96492 0.97581 1.21037 1.00341 0.98694 0.94751 1.20789 0.98630 0.91495 0.98889 1.21681 0.96118 0.97123 0.94595 1.19949 0.95987 0.89063 0.85496 0.91510 1.42412 1.09150 1.82033 1.01391 1.19227 0.89322 1.39394 0.89468 0.91006 1.24742 0.96274 1.02254 0.97109 1.69677 1.17701 1.55214 1.14707 0.86178 0.81276 0.77805 0.81272 1.20467 1.21836 1.21877 1.24053 0.97378 0.91929 0.96770 1.77169 0.95950 1.13363 1.25600 1.48334 1.04157 1.06268 1.56003 1.21925 1.01183 0.77513 1.03768 0.89673 0.91293 0.87208 0.76715 0.90783 0.90337 0.87171 0.86841 0.86685 0.85468 0.77795 0.93449 0.79277 0.90361 0.89240 0.88932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 9.34 36.00 0.34 -0.64 16 2 C 0.15 1.91 7.01 -81.60 -0.57 1.34 16 3 C -0.29 -4.09 6.13 -105.07 -0.64 -4.74 16 4 C 0.60 9.62 7.81 -12.52 -0.10 9.52 16 5 O -0.55 -10.24 14.49 5.27 0.08 -10.17 16 6 N -0.71 -10.66 5.13 -53.52 -0.27 -10.93 16 7 C 0.14 2.47 3.12 -66.52 -0.21 2.26 16 8 H 0.10 2.09 7.22 -51.93 -0.38 1.72 16 9 C -0.09 -1.30 6.49 -26.85 -0.17 -1.48 16 10 C -0.11 -1.74 6.14 -104.20 -0.64 -2.38 16 11 C -0.12 -1.74 10.04 -39.53 -0.40 -2.14 16 12 C -0.13 -1.93 10.05 -39.63 -0.40 -2.32 16 13 C -0.13 -2.08 10.05 -39.63 -0.40 -2.48 16 14 C -0.08 -1.49 9.96 -39.53 -0.39 -1.89 16 15 C -0.09 -1.71 5.79 -104.21 -0.60 -2.31 16 16 C 0.21 3.97 3.22 -68.05 -0.22 3.75 16 17 H 0.07 1.25 7.76 -51.93 -0.40 0.84 16 18 N -0.71 -17.08 5.15 -53.55 -0.28 -17.36 16 19 C -0.24 -6.40 9.54 -15.06 -0.14 -6.54 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 22 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 23 Si 0.90 21.87 29.55 -169.99 -5.02 16.85 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 C 0.09 1.09 11.50 -16.98 -0.20 0.89 16 28 N -0.30 -3.96 12.50 30.86 0.39 -3.58 16 29 N -0.37 -4.14 3.98 -63.34 -0.25 -4.39 16 30 C 0.10 0.61 11.06 59.85 0.66 1.28 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.49 7.71 -51.93 -0.40 0.09 16 33 H 0.11 1.36 6.51 -51.93 -0.34 1.02 16 34 H 0.40 5.09 7.38 -40.82 -0.30 4.79 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 37 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 40 H 0.13 2.57 7.67 -52.49 -0.40 2.17 16 41 H 0.39 10.29 7.60 -40.82 -0.31 9.98 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.19 1.82 7.50 -52.48 -0.39 1.43 16 44 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 0.35 7.64 -51.93 -0.40 -0.04 16 46 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 385.86 15.07 5.81 5.81 Total: -1.00 -33.91 385.86 -9.25 -43.16 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -6.25 Total: 15.56 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -4.18 Total: -8.16 kcal Atomic # 7 Polarization: -63.36 SS G_CDS: 0.31 Total: -63.05 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.91 -9.25 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960255520.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.616 kcal (2) G-P(sol) polarization free energy of solvation -33.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds