Wall clock time and date at job start Tue Mar 31 2020 23:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38037 * 126.29590 * 2 1 4 4 C 1.47432 * 126.41184 * 0.02562 * 3 2 1 5 5 O 1.21612 * 120.00079 * 359.71031 * 4 3 2 6 6 N 1.34773 * 120.00313 * 179.70956 * 4 3 2 7 7 C 1.46500 * 119.99863 * 179.97438 * 6 4 3 8 8 H 1.08993 * 110.88473 * 31.49160 * 7 6 4 9 9 C 1.54348 * 110.82363 * 267.96777 * 7 6 4 10 10 C 1.51364 * 105.17061 * 215.43127 * 9 7 6 11 11 C 1.38507 * 130.38786 * 197.17380 * 10 9 7 12 12 C 1.38108 * 120.21220 * 180.02562 * 11 10 9 13 13 C 1.38248 * 119.93504 * 359.97438 * 12 11 10 14 14 C 1.38106 * 119.93872 * 359.97438 * 13 12 11 15 15 C 1.38221 * 109.76271 * 17.19241 * 10 9 7 16 16 C 1.51367 * 109.75425 * 359.97438 * 15 10 9 17 17 H 1.09002 * 110.30256 * 101.73694 * 16 15 10 18 18 N 1.46504 * 110.29846 * 223.78968 * 16 15 10 19 19 C 1.36931 * 120.00154 * 272.22230 * 18 16 15 20 20 H 1.08001 * 119.99908 * 0.02562 * 19 18 16 21 21 C 1.38808 * 120.00257 * 180.02562 * 19 18 16 22 22 N 1.31617 * 119.99977 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00264 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46946 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47617 * 119.99662 * 23 21 19 26 26 H 1.48497 * 109.46584 * 239.99633 * 23 21 19 27 27 C 1.41283 * 107.17797 * 179.75965 * 3 2 1 28 28 N 1.30455 * 108.02191 * 0.24017 * 27 3 2 29 29 N 1.34267 * 126.29071 * 180.18173 * 2 1 3 30 30 C 1.46499 * 125.75318 * 359.95544 * 29 2 1 31 31 H 1.08997 * 109.47236 * 90.00122 * 1 2 3 32 32 H 1.08998 * 109.46945 * 209.99703 * 1 2 3 33 33 H 1.08993 * 109.47015 * 329.99967 * 1 2 3 34 34 H 0.96995 * 120.00017 * 0.02562 * 6 4 3 35 35 H 1.08999 * 110.29750 * 96.50702 * 9 7 6 36 36 H 1.08995 * 110.38613 * 334.40127 * 9 7 6 37 37 H 1.07995 * 119.88793 * 0.02562 * 11 10 9 38 38 H 1.07999 * 120.02535 * 179.97438 * 12 11 10 39 39 H 1.08000 * 120.03075 * 180.02562 * 13 12 11 40 40 H 1.07996 * 119.89223 * 180.02562 * 14 13 12 41 41 H 0.97004 * 119.99848 * 92.22944 * 18 16 15 42 42 H 0.96998 * 120.00272 * 180.02562 * 22 21 19 43 43 H 1.08003 * 125.99550 * 180.23972 * 27 3 2 44 44 H 1.08994 * 109.47331 * 270.30796 * 30 29 2 45 45 H 1.09000 * 109.47278 * 30.31306 * 30 29 2 46 46 H 1.09004 * 109.47053 * 150.31059 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1125 0.0000 4 6 1.8858 2.5202 0.0005 5 8 0.6995 2.7878 -0.0043 6 7 2.7999 3.5106 0.0064 7 6 2.3643 4.9094 0.0063 8 1 1.4172 5.0214 0.5339 9 6 2.2570 5.4506 -1.4352 10 6 2.6902 6.8983 -1.3480 11 6 2.5014 7.9464 -2.2335 12 6 2.9940 9.2025 -1.9388 13 6 3.6774 9.4155 -0.7561 14 6 3.8658 8.3719 0.1287 15 6 3.3739 7.1112 -0.1657 16 6 3.4462 5.8211 0.6228 17 1 4.4306 5.3660 0.5138 18 7 3.1572 6.0729 2.0368 19 6 4.1688 6.4235 2.8906 20 1 5.1797 6.5147 2.5214 21 6 3.8951 6.6615 4.2304 22 7 2.6631 6.5508 4.6802 23 14 5.2750 7.1404 5.3949 24 1 6.5566 7.1967 4.6471 25 1 4.9860 8.4727 5.9837 26 1 5.3792 6.1319 6.4799 27 6 3.6590 0.6498 0.0057 28 7 3.6340 -0.6545 0.0036 29 7 2.3017 -1.0822 -0.0034 30 6 1.8500 -2.4758 -0.0069 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5138 34 1 3.7461 3.2973 0.0099 35 1 1.2279 5.3843 -1.7883 36 1 2.9204 4.8965 -2.0991 37 1 1.9673 7.7808 -3.1574 38 1 2.8454 10.0175 -2.6316 39 1 4.0630 10.3972 -0.5238 40 1 4.3994 8.5392 1.0526 41 1 2.2492 5.9912 2.3683 42 1 2.4717 6.7175 5.6164 43 1 4.5449 1.2676 0.0108 44 1 1.7334 -2.8226 1.0198 45 1 0.8937 -2.5466 -0.5252 46 1 2.5870 -3.0953 -0.5181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960255520.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:31 Heat of formation + Delta-G solvation = 59.239273 kcal Electronic energy + Delta-G solvation = -29009.836568 eV Core-core repulsion = 25093.211693 eV Total energy + Delta-G solvation = -3916.624875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.46576 -41.28883 -39.83334 -37.42389 -35.71309 -34.77812 -33.83952 -32.90824 -32.81963 -31.21324 -29.53527 -28.03236 -27.66689 -27.59402 -25.03091 -24.04368 -22.92605 -21.86755 -21.67105 -21.29287 -20.57780 -19.19821 -18.63274 -17.39274 -17.06566 -16.83207 -16.77025 -16.39662 -16.01512 -15.85914 -15.51649 -15.30700 -15.17603 -15.01751 -14.61116 -14.20905 -14.10796 -13.95188 -13.80637 -13.72546 -13.50422 -13.42810 -13.29429 -13.26631 -13.05307 -12.87159 -12.63802 -12.24752 -12.11471 -11.97313 -11.88435 -11.76162 -11.56086 -11.04399 -10.83062 -10.38433 -10.10925 -9.59042 -9.56126 -9.34984 -9.03278 -7.92411 -5.21706 0.50146 0.56788 0.63748 1.14579 1.41950 1.47139 1.47354 1.57031 2.28472 2.49244 2.56253 2.97911 3.39508 3.47092 3.56706 3.61790 3.76918 3.99313 4.04437 4.13903 4.17117 4.19977 4.32917 4.38586 4.39005 4.42641 4.46252 4.53312 4.64186 4.68369 4.71221 4.82584 4.89533 4.93978 4.99839 5.03777 5.17117 5.24138 5.35239 5.40596 5.51782 5.56978 5.69531 5.76311 5.90958 5.93526 6.24210 6.28978 6.49031 6.68726 7.33566 7.35754 8.04248 8.29623 9.31031 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009007 B = 0.003590 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.922506 B = 7797.053975 C =10035.749390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.155 3.845 3 C -0.323 4.323 4 C 0.596 3.404 5 O -0.583 6.583 6 N -0.701 5.701 7 C 0.154 3.846 8 H 0.071 0.929 9 C -0.074 4.074 10 C -0.107 4.107 11 C -0.114 4.114 12 C -0.122 4.122 13 C -0.133 4.133 14 C -0.107 4.107 15 C -0.119 4.119 16 C 0.206 3.794 17 H 0.072 0.928 18 N -0.722 5.722 19 C -0.228 4.228 20 H 0.079 0.921 21 C -0.072 4.072 22 N -0.969 5.969 23 Si 0.966 3.034 24 H -0.263 1.263 25 H -0.297 1.297 26 H -0.297 1.297 27 C 0.086 3.914 28 N -0.323 5.323 29 N -0.362 5.362 30 C 0.084 3.916 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.410 0.590 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.143 0.857 38 H 0.152 0.848 39 H 0.136 0.864 40 H 0.099 0.901 41 H 0.371 0.629 42 H 0.249 0.751 43 H 0.210 0.790 44 H 0.090 0.910 45 H 0.118 0.882 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.247 -12.508 -17.171 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.021 3.979 3 C -0.337 4.337 4 C 0.385 3.615 5 O -0.464 6.464 6 N -0.351 5.351 7 C 0.047 3.953 8 H 0.089 0.911 9 C -0.112 4.112 10 C -0.108 4.108 11 C -0.132 4.132 12 C -0.140 4.140 13 C -0.151 4.151 14 C -0.126 4.126 15 C -0.122 4.122 16 C 0.096 3.904 17 H 0.089 0.911 18 N -0.360 5.360 19 C -0.359 4.359 20 H 0.096 0.904 21 C -0.264 4.264 22 N -0.620 5.620 23 Si 0.796 3.204 24 H -0.187 1.187 25 H -0.224 1.224 26 H -0.225 1.225 27 C -0.101 4.101 28 N -0.143 5.143 29 N -0.142 5.142 30 C -0.055 4.055 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.246 0.754 35 H 0.098 0.902 36 H 0.119 0.881 37 H 0.161 0.839 38 H 0.169 0.831 39 H 0.154 0.846 40 H 0.118 0.882 41 H 0.203 0.797 42 H 0.058 0.942 43 H 0.227 0.773 44 H 0.109 0.891 45 H 0.136 0.864 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.195 -13.569 -17.084 21.849 hybrid contribution 0.373 1.169 1.581 2.002 sum -0.822 -12.400 -15.502 19.868 Atomic orbital electron populations 1.20708 0.84482 1.05142 1.04975 1.21879 0.95966 0.86267 0.93759 1.20012 0.94050 0.92927 1.26738 1.17453 0.85059 0.84428 0.74542 1.90695 1.17807 1.84830 1.53072 1.45485 1.10049 1.04571 1.74949 1.21549 0.97492 0.80344 0.95876 0.91099 1.21266 1.02565 0.91311 0.96101 1.20642 0.99173 0.95949 0.95072 1.20876 1.00718 0.91916 0.99685 1.21310 0.98096 0.97450 0.97161 1.21295 1.00223 0.98753 0.94786 1.20761 1.00058 0.92761 0.98984 1.21511 0.98203 0.96562 0.95946 1.20123 0.96790 0.90265 0.83222 0.91058 1.42545 1.07805 1.82232 1.03429 1.19559 0.89966 1.36683 0.89729 0.90360 1.25478 0.98247 1.03798 0.98854 1.69840 1.19758 1.57923 1.14453 0.85177 0.79422 0.76710 0.79114 1.18701 1.22431 1.22463 1.24375 0.97593 0.92067 0.96083 1.77117 0.97347 1.13495 1.26301 1.48707 1.03347 1.07630 1.54498 1.22382 1.02823 0.75067 1.05235 0.88129 0.88075 0.90014 0.75390 0.90211 0.88085 0.83900 0.83054 0.84621 0.88244 0.79744 0.94246 0.77324 0.89104 0.86395 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.76 9.34 71.23 0.67 -1.10 16 2 C 0.16 3.69 7.01 42.14 0.30 3.99 16 3 C -0.32 -9.03 6.13 -20.15 -0.12 -9.15 16 4 C 0.60 19.58 7.81 86.67 0.68 20.26 16 5 O -0.58 -22.47 14.49 -4.07 -0.06 -22.53 16 6 N -0.70 -21.48 5.13 -441.48 -2.26 -23.74 16 7 C 0.15 5.39 3.12 45.90 0.14 5.53 16 8 H 0.07 3.00 7.22 -2.39 -0.02 2.98 16 9 C -0.07 -2.14 6.49 30.52 0.20 -1.95 16 10 C -0.11 -3.38 6.14 -19.59 -0.12 -3.50 16 11 C -0.11 -3.03 10.04 22.30 0.22 -2.81 16 12 C -0.12 -3.13 10.05 22.24 0.22 -2.91 16 13 C -0.13 -4.02 10.05 22.24 0.22 -3.80 16 14 C -0.11 -4.06 9.96 22.30 0.22 -3.84 16 15 C -0.12 -4.47 5.79 -19.59 -0.11 -4.59 16 16 C 0.21 8.11 3.22 44.91 0.14 8.26 16 17 H 0.07 2.71 7.76 -2.39 -0.02 2.69 16 18 N -0.72 -36.28 5.15 -323.32 -1.66 -37.94 16 19 C -0.23 -12.33 9.54 84.03 0.80 -11.53 16 20 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 21 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 22 N -0.97 -60.12 13.06 21.65 0.28 -59.84 16 23 Si 0.97 46.21 29.55 68.60 2.03 48.24 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 26 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 27 C 0.09 2.12 11.50 85.65 0.99 3.11 16 28 N -0.32 -8.14 12.50 -56.27 -0.70 -8.84 16 29 N -0.36 -7.55 3.98 -354.32 -1.41 -8.96 16 30 C 0.08 0.84 11.06 127.77 1.41 2.25 16 31 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.10 1.17 7.71 -2.39 -0.02 1.15 16 33 H 0.08 2.05 6.51 -2.39 -0.02 2.04 16 34 H 0.41 10.48 7.38 -92.71 -0.68 9.80 16 35 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.10 2.49 8.08 -2.39 -0.02 2.47 16 37 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 39 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 40 H 0.10 4.22 7.67 -2.91 -0.02 4.20 16 41 H 0.37 20.88 7.60 -92.71 -0.70 20.18 16 42 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 43 H 0.21 3.88 7.50 -2.91 -0.02 3.85 16 44 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.12 0.51 7.64 -2.39 -0.02 0.49 16 46 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -76.96 385.86 2.17 -74.78 By element: Atomic # 1 Polarization: 44.60 SS G_CDS: -0.36 Total: 44.23 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 6.33 Total: -5.41 kcal Atomic # 7 Polarization: -133.56 SS G_CDS: -5.76 Total: -139.32 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.06 Total: -22.53 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -76.96 2.17 -74.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960255520.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.024 kcal (2) G-P(sol) polarization free energy of solvation -76.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds