Wall clock time and date at job start Tue Mar 31 2020 23:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35358 * 126.38316 * 2 1 4 4 C 1.41506 * 105.50173 * 179.97438 * 3 2 1 5 5 C 1.47711 * 126.51875 * 179.97438 * 4 3 2 6 6 O 1.21573 * 120.00075 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99927 * 179.72952 * 5 4 3 8 8 C 1.46499 * 120.00195 * 180.27919 * 7 5 4 9 9 H 1.09006 * 110.73065 * 34.29401 * 8 7 5 10 10 C 1.54348 * 110.81998 * 270.89004 * 8 7 5 11 11 C 1.51358 * 105.17022 * 268.12055 * 10 8 7 12 12 C 1.38504 * 130.39303 * 162.81338 * 11 10 8 13 13 C 1.38098 * 120.21459 * 180.02562 * 12 11 10 14 14 C 1.38252 * 119.94012 * 359.97438 * 13 12 11 15 15 C 1.38101 * 119.93065 * 359.97438 * 14 13 12 16 16 C 1.38214 * 109.76112 * 342.81253 * 11 10 8 17 17 C 1.51894 * 109.80650 * 359.97364 * 16 11 10 18 18 H 1.09001 * 110.48378 * 136.07840 * 17 16 11 19 19 N 1.46496 * 110.37249 * 258.39655 * 17 16 11 20 20 C 1.36938 * 120.00034 * 270.47235 * 19 17 16 21 21 H 1.07997 * 120.00209 * 359.97438 * 20 19 17 22 22 C 1.38821 * 119.99979 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99669 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99887 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.47009 * 90.00145 * 24 22 20 26 26 H 1.48500 * 109.47144 * 209.99605 * 24 22 20 27 27 H 1.48493 * 109.47108 * 330.00123 * 24 22 20 28 28 N 1.31804 * 106.95999 * 0.22774 * 4 3 2 29 29 N 1.28463 * 110.07865 * 359.61614 * 28 4 3 30 30 C 1.46494 * 124.88855 * 180.17783 * 29 28 4 31 31 H 1.09007 * 109.47005 * 90.02400 * 1 2 3 32 32 H 1.08997 * 109.47081 * 210.02245 * 1 2 3 33 33 H 1.09001 * 109.47230 * 330.03107 * 1 2 3 34 34 H 1.08004 * 127.25418 * 0.02562 * 3 2 1 35 35 H 0.97000 * 119.99736 * 0.27192 * 7 5 4 36 36 H 1.08998 * 110.30257 * 27.04767 * 10 8 7 37 37 H 1.09007 * 110.30035 * 149.09729 * 10 8 7 38 38 H 1.08001 * 119.89113 * 0.02562 * 12 11 10 39 39 H 1.08007 * 120.03186 * 179.97438 * 13 12 11 40 40 H 1.07999 * 120.03779 * 180.02562 * 14 13 12 41 41 H 1.08004 * 119.89506 * 180.02562 * 15 14 13 42 42 H 0.97004 * 120.00416 * 90.46876 * 19 17 16 43 43 H 0.97010 * 119.99718 * 179.97438 * 23 22 20 44 44 H 1.09008 * 109.47355 * 270.24885 * 30 29 28 45 45 H 1.09001 * 109.47321 * 30.24478 * 30 29 28 46 46 H 1.09001 * 109.47326 * 150.24630 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5854 0.0006 5 6 4.8765 1.3812 0.0003 6 8 4.8213 2.5957 -0.0001 7 7 6.0730 0.7609 0.0065 8 6 7.3072 1.5502 0.0124 9 1 7.1757 2.4678 0.5858 10 6 7.7645 1.8641 -1.4280 11 6 8.7062 0.7387 -1.7987 12 6 9.1639 0.3228 -3.0381 13 6 10.0325 -0.7464 -3.1352 14 6 10.4477 -1.4041 -1.9923 15 6 9.9933 -0.9903 -0.7556 16 6 9.1213 0.0811 -0.6561 17 6 8.4858 0.7215 0.5659 18 1 8.1213 -0.0435 1.2514 19 7 9.4479 1.5950 1.2424 20 6 10.2647 1.0882 2.2177 21 1 10.1994 0.0448 2.4884 22 6 11.1767 1.9158 2.8584 23 7 11.9614 1.4288 3.7961 24 14 11.2891 3.7207 2.3906 25 1 10.3566 4.5099 3.2350 26 1 12.6777 4.2019 2.6041 27 1 10.9224 3.8854 0.9611 28 7 3.5419 -0.7296 -0.0041 29 7 2.3081 -1.0871 0.0006 30 6 1.8376 -2.4745 0.0012 31 1 -0.3633 -0.0004 -1.0277 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3634 0.8903 0.5133 34 1 2.0057 2.1260 0.0004 35 1 6.1170 -0.2081 0.0071 36 1 6.9081 1.8783 -2.1021 37 1 8.2855 2.8211 -1.4592 38 1 8.8403 0.8364 -3.9314 39 1 10.3871 -1.0685 -4.1032 40 1 11.1273 -2.2402 -2.0664 41 1 10.3184 -1.5043 0.1370 42 1 9.5063 2.5323 0.9995 43 1 12.5990 2.0070 4.2436 44 1 1.7210 -2.8191 -1.0264 45 1 2.5638 -3.1041 0.5153 46 1 0.8781 -2.5326 0.5150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960256461.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:35 Heat of formation + Delta-G solvation = 90.807379 kcal Electronic energy + Delta-G solvation = -28945.519356 eV Core-core repulsion = 25030.263377 eV Total energy + Delta-G solvation = -3915.255979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.85245 -40.19472 -38.77585 -36.19109 -34.10319 -33.79300 -32.94187 -32.40117 -31.26195 -30.09556 -28.40562 -27.63461 -26.96304 -26.29431 -23.74011 -22.58536 -21.86698 -21.15525 -20.51014 -20.17716 -19.46168 -17.89674 -17.22280 -16.64547 -16.58103 -16.15050 -15.64872 -15.02239 -14.67188 -14.49244 -14.42150 -14.28616 -13.86851 -13.84963 -13.64848 -13.42304 -13.02973 -12.97474 -12.93725 -12.78405 -12.77250 -12.59684 -12.46714 -11.74173 -11.54987 -11.24139 -11.12917 -10.99060 -10.83818 -10.62333 -10.39730 -10.15851 -10.02754 -9.63163 -9.30607 -9.10596 -9.04996 -8.85812 -8.34974 -8.13796 -7.36843 -5.81426 -3.18443 1.49436 1.80217 1.86308 1.94312 2.21914 3.25228 3.39258 3.42377 3.46591 3.49055 4.10523 4.20810 4.33045 4.57014 4.61393 4.66823 4.70142 4.75705 4.95647 5.00654 5.09891 5.28300 5.31194 5.38938 5.40832 5.45467 5.47022 5.48493 5.52026 5.65394 5.72902 5.78137 5.92544 6.04707 6.12096 6.21493 6.25548 6.31222 6.46937 6.54057 6.58908 6.74556 6.87139 6.95958 7.19896 7.45944 7.55769 7.84174 7.91300 8.34266 8.36498 9.12250 9.84797 10.02443 11.35993 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010875 B = 0.003247 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.011043 B = 8621.049360 C = 9843.968805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.005 3.995 3 C -0.178 4.178 4 C -0.009 4.009 5 C 0.605 3.395 6 O -0.533 6.533 7 N -0.699 5.699 8 C 0.133 3.867 9 H 0.109 0.891 10 C -0.088 4.088 11 C -0.097 4.097 12 C -0.115 4.115 13 C -0.130 4.130 14 C -0.127 4.127 15 C -0.085 4.085 16 C -0.096 4.096 17 C 0.214 3.786 18 H 0.075 0.925 19 N -0.728 5.728 20 C -0.247 4.247 21 H 0.093 0.907 22 C 0.011 3.989 23 N -0.929 5.929 24 Si 0.880 3.120 25 H -0.281 1.281 26 H -0.290 1.290 27 H -0.275 1.275 28 N -0.260 5.260 29 N -0.283 5.283 30 C 0.085 3.915 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.162 0.838 35 H 0.407 0.593 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.365 0.635 43 H 0.261 0.739 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.200 -8.142 -12.407 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C -0.206 4.206 4 C -0.170 4.170 5 C 0.389 3.611 6 O -0.408 6.408 7 N -0.349 5.349 8 C 0.027 3.973 9 H 0.127 0.873 10 C -0.126 4.126 11 C -0.098 4.098 12 C -0.134 4.134 13 C -0.148 4.148 14 C -0.146 4.146 15 C -0.104 4.104 16 C -0.099 4.099 17 C 0.103 3.897 18 H 0.092 0.908 19 N -0.369 5.369 20 C -0.376 4.376 21 H 0.110 0.890 22 C -0.185 4.185 23 N -0.575 5.575 24 Si 0.710 3.290 25 H -0.208 1.208 26 H -0.216 1.216 27 H -0.201 1.201 28 N -0.095 5.095 29 N -0.072 5.072 30 C -0.055 4.055 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.179 0.821 35 H 0.242 0.758 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.199 0.801 43 H 0.071 0.929 44 H 0.103 0.897 45 H 0.117 0.883 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.478 -8.479 -12.166 26.100 hybrid contribution 0.012 1.383 -0.401 1.440 sum -21.466 -7.096 -12.567 25.866 Atomic orbital electron populations 1.20337 0.86684 1.03817 1.03188 1.21391 0.95405 0.86752 1.08357 1.21521 0.90520 0.99600 1.08983 1.21914 0.95177 0.89663 1.10212 1.16854 0.81575 0.86396 0.76255 1.90793 1.86755 1.12822 1.50437 1.45706 1.04653 1.10764 1.73784 1.21953 0.83175 0.96025 0.96114 0.87348 1.21430 0.97667 0.97051 0.96483 1.20506 0.98575 0.97251 0.93470 1.20467 0.98997 0.97765 0.96126 1.20866 0.99014 0.96888 0.98059 1.20993 1.00528 1.00408 0.92628 1.20675 0.96103 0.96275 0.97320 1.21733 0.97086 0.94270 0.96813 1.19861 0.87547 0.92040 0.90271 0.90762 1.42611 1.43367 1.07613 1.43276 1.19015 1.12199 0.96682 1.09710 0.88952 1.24637 0.98063 0.97641 0.98164 1.69695 1.25276 1.35135 1.27430 0.86610 0.77307 0.86762 0.78320 1.20763 1.21619 1.20113 1.73548 1.01684 1.14972 1.19339 1.45312 1.02835 1.07500 1.51542 1.22158 1.01593 0.77367 1.04418 0.90404 0.91243 0.89556 0.82076 0.75805 0.90747 0.89562 0.87165 0.86762 0.86570 0.86167 0.80139 0.92917 0.89723 0.88335 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.10 36.01 0.36 -0.03 16 2 C 0.00 0.04 6.92 -82.21 -0.57 -0.52 16 3 C -0.18 -2.16 10.73 -39.36 -0.42 -2.59 16 4 C -0.01 -0.14 7.13 -82.76 -0.59 -0.73 16 5 C 0.61 9.93 7.82 -12.39 -0.10 9.83 16 6 O -0.53 -10.14 16.61 5.30 0.09 -10.06 16 7 N -0.70 -10.90 5.12 -53.42 -0.27 -11.18 16 8 C 0.13 2.30 2.97 -66.52 -0.20 2.10 16 9 H 0.11 2.04 7.55 -51.93 -0.39 1.65 16 10 C -0.09 -1.43 6.49 -26.85 -0.17 -1.60 16 11 C -0.10 -1.65 6.14 -104.21 -0.64 -2.29 16 12 C -0.12 -1.77 10.04 -39.54 -0.40 -2.16 16 13 C -0.13 -1.89 10.05 -39.63 -0.40 -2.29 16 14 C -0.13 -1.98 10.05 -39.63 -0.40 -2.38 16 15 C -0.08 -1.53 10.04 -39.54 -0.40 -1.93 16 16 C -0.10 -1.77 5.79 -103.94 -0.60 -2.37 16 17 C 0.21 4.17 3.15 -67.79 -0.21 3.95 16 18 H 0.07 1.47 8.02 -51.93 -0.42 1.05 16 19 N -0.73 -17.15 4.94 -53.29 -0.26 -17.41 16 20 C -0.25 -6.82 10.44 -15.06 -0.16 -6.98 16 21 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 22 C 0.01 0.33 5.50 -17.43 -0.10 0.24 16 23 N -0.93 -28.89 13.97 55.49 0.78 -28.12 16 24 Si 0.88 22.25 27.74 -169.99 -4.71 17.54 16 25 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 28 N -0.26 -3.36 11.67 33.42 0.39 -2.97 16 29 N -0.28 -2.76 3.70 -63.85 -0.24 -2.99 16 30 C 0.09 0.41 11.11 59.84 0.66 1.07 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.21 7.00 -51.93 -0.36 -0.15 16 33 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.16 1.79 8.06 -52.48 -0.42 1.37 16 35 H 0.41 5.86 8.35 -40.82 -0.34 5.52 16 36 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 37 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 40 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 41 H 0.12 2.20 8.06 -52.48 -0.42 1.78 16 42 H 0.37 8.58 5.69 -40.82 -0.23 8.35 16 43 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 44 H 0.08 0.29 8.14 -51.92 -0.42 -0.14 16 45 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.20 6.95 -51.93 -0.36 -0.16 16 LS Contribution 387.95 15.07 5.85 5.85 Total: -1.00 -35.38 387.95 -9.05 -44.44 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -6.35 Total: 13.58 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -4.32 Total: -8.68 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: 0.39 Total: -62.67 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.38 -9.05 -44.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960256461.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.245 kcal (2) G-P(sol) polarization free energy of solvation -35.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds