Wall clock time and date at job start Tue Mar 31 2020 23:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35358 * 126.38316 * 2 1 4 4 C 1.41506 * 105.50173 * 179.97438 * 3 2 1 5 5 C 1.47711 * 126.51875 * 179.97438 * 4 3 2 6 6 O 1.21573 * 120.00075 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99927 * 179.72952 * 5 4 3 8 8 C 1.46499 * 120.00195 * 180.27919 * 7 5 4 9 9 H 1.09006 * 110.73065 * 34.29401 * 8 7 5 10 10 C 1.54348 * 110.81998 * 270.89004 * 8 7 5 11 11 C 1.51358 * 105.17022 * 268.12055 * 10 8 7 12 12 C 1.38504 * 130.39303 * 162.81338 * 11 10 8 13 13 C 1.38098 * 120.21459 * 180.02562 * 12 11 10 14 14 C 1.38252 * 119.94012 * 359.97438 * 13 12 11 15 15 C 1.38101 * 119.93065 * 359.97438 * 14 13 12 16 16 C 1.38214 * 109.76112 * 342.81253 * 11 10 8 17 17 C 1.51894 * 109.80650 * 359.97364 * 16 11 10 18 18 H 1.09001 * 110.48378 * 136.07840 * 17 16 11 19 19 N 1.46496 * 110.37249 * 258.39655 * 17 16 11 20 20 C 1.36938 * 120.00034 * 270.47235 * 19 17 16 21 21 H 1.07997 * 120.00209 * 359.97438 * 20 19 17 22 22 C 1.38821 * 119.99979 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99669 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99887 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.47009 * 90.00145 * 24 22 20 26 26 H 1.48500 * 109.47144 * 209.99605 * 24 22 20 27 27 H 1.48493 * 109.47108 * 330.00123 * 24 22 20 28 28 N 1.31804 * 106.95999 * 0.22774 * 4 3 2 29 29 N 1.28463 * 110.07865 * 359.61614 * 28 4 3 30 30 C 1.46494 * 124.88855 * 180.17783 * 29 28 4 31 31 H 1.09007 * 109.47005 * 90.02400 * 1 2 3 32 32 H 1.08997 * 109.47081 * 210.02245 * 1 2 3 33 33 H 1.09001 * 109.47230 * 330.03107 * 1 2 3 34 34 H 1.08004 * 127.25418 * 0.02562 * 3 2 1 35 35 H 0.97000 * 119.99736 * 0.27192 * 7 5 4 36 36 H 1.08998 * 110.30257 * 27.04767 * 10 8 7 37 37 H 1.09007 * 110.30035 * 149.09729 * 10 8 7 38 38 H 1.08001 * 119.89113 * 0.02562 * 12 11 10 39 39 H 1.08007 * 120.03186 * 179.97438 * 13 12 11 40 40 H 1.07999 * 120.03779 * 180.02562 * 14 13 12 41 41 H 1.08004 * 119.89506 * 180.02562 * 15 14 13 42 42 H 0.97004 * 120.00416 * 90.46876 * 19 17 16 43 43 H 0.97010 * 119.99718 * 179.97438 * 23 22 20 44 44 H 1.09008 * 109.47355 * 270.24885 * 30 29 28 45 45 H 1.09001 * 109.47321 * 30.24478 * 30 29 28 46 46 H 1.09001 * 109.47326 * 150.24630 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5854 0.0006 5 6 4.8765 1.3812 0.0003 6 8 4.8213 2.5957 -0.0001 7 7 6.0730 0.7609 0.0065 8 6 7.3072 1.5502 0.0124 9 1 7.1757 2.4678 0.5858 10 6 7.7645 1.8641 -1.4280 11 6 8.7062 0.7387 -1.7987 12 6 9.1639 0.3228 -3.0381 13 6 10.0325 -0.7464 -3.1352 14 6 10.4477 -1.4041 -1.9923 15 6 9.9933 -0.9903 -0.7556 16 6 9.1213 0.0811 -0.6561 17 6 8.4858 0.7215 0.5659 18 1 8.1213 -0.0435 1.2514 19 7 9.4479 1.5950 1.2424 20 6 10.2647 1.0882 2.2177 21 1 10.1994 0.0448 2.4884 22 6 11.1767 1.9158 2.8584 23 7 11.9614 1.4288 3.7961 24 14 11.2891 3.7207 2.3906 25 1 10.3566 4.5099 3.2350 26 1 12.6777 4.2019 2.6041 27 1 10.9224 3.8854 0.9611 28 7 3.5419 -0.7296 -0.0041 29 7 2.3081 -1.0871 0.0006 30 6 1.8376 -2.4745 0.0012 31 1 -0.3633 -0.0004 -1.0277 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3634 0.8903 0.5133 34 1 2.0057 2.1260 0.0004 35 1 6.1170 -0.2081 0.0071 36 1 6.9081 1.8783 -2.1021 37 1 8.2855 2.8211 -1.4592 38 1 8.8403 0.8364 -3.9314 39 1 10.3871 -1.0685 -4.1032 40 1 11.1273 -2.2402 -2.0664 41 1 10.3184 -1.5043 0.1370 42 1 9.5063 2.5323 0.9995 43 1 12.5990 2.0070 4.2436 44 1 1.7210 -2.8191 -1.0264 45 1 2.5638 -3.1041 0.5153 46 1 0.8781 -2.5326 0.5150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960256461.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:34 Heat of formation + Delta-G solvation = 66.849549 kcal Electronic energy + Delta-G solvation = -28946.558245 eV Core-core repulsion = 25030.263377 eV Total energy + Delta-G solvation = -3916.294868 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.68733 -41.56646 -40.08024 -37.63183 -35.84763 -34.68025 -33.92640 -33.51100 -33.02624 -31.63240 -29.56760 -28.35789 -27.93889 -27.67989 -25.13268 -24.20583 -23.11422 -22.10270 -21.73098 -21.67041 -20.62337 -19.84094 -18.18969 -17.74146 -17.40747 -17.34961 -17.08115 -16.42902 -16.27850 -15.86083 -15.72500 -15.54307 -15.24494 -14.96665 -14.72656 -14.40860 -14.30854 -14.04107 -13.99259 -13.91915 -13.59438 -13.49034 -13.35489 -13.06077 -12.96536 -12.86284 -12.67686 -12.44058 -12.21194 -12.05971 -11.86494 -11.81988 -11.70175 -11.35163 -11.06281 -10.36562 -10.03469 -9.90440 -9.67578 -9.50935 -9.35254 -8.06150 -5.41199 0.47379 0.51506 0.55752 1.10827 1.35976 1.38128 1.44276 1.54773 2.03733 2.31174 2.44605 2.88752 3.24356 3.28137 3.34605 3.62208 3.73036 3.78402 3.94875 3.99189 4.11556 4.22818 4.24154 4.28540 4.36674 4.41688 4.53976 4.59758 4.64208 4.67587 4.70441 4.78093 4.81351 4.84675 4.91269 5.03817 5.10842 5.16730 5.26042 5.32165 5.38944 5.61345 5.67220 5.69909 5.85585 5.89212 6.15870 6.19024 6.36868 6.87069 6.99477 7.09672 7.72251 7.92285 9.14592 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010875 B = 0.003247 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.011043 B = 8621.049360 C = 9843.968805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.022 3.978 3 C -0.206 4.206 4 C -0.042 4.042 5 C 0.604 3.396 6 O -0.567 6.567 7 N -0.692 5.692 8 C 0.142 3.858 9 H 0.091 0.909 10 C -0.080 4.080 11 C -0.101 4.101 12 C -0.115 4.115 13 C -0.119 4.119 14 C -0.128 4.128 15 C -0.109 4.109 16 C -0.119 4.119 17 C 0.212 3.788 18 H 0.060 0.940 19 N -0.733 5.733 20 C -0.227 4.227 21 H 0.062 0.938 22 C -0.054 4.054 23 N -0.978 5.978 24 Si 0.945 3.055 25 H -0.278 1.278 26 H -0.293 1.293 27 H -0.255 1.255 28 N -0.277 5.277 29 N -0.277 5.277 30 C 0.071 3.929 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.162 0.838 35 H 0.412 0.588 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.140 0.860 39 H 0.153 0.847 40 H 0.141 0.859 41 H 0.101 0.899 42 H 0.367 0.633 43 H 0.259 0.741 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.558 -8.776 -15.465 30.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 C -0.235 4.235 4 C -0.200 4.200 5 C 0.390 3.610 6 O -0.444 6.444 7 N -0.342 5.342 8 C 0.036 3.964 9 H 0.109 0.891 10 C -0.118 4.118 11 C -0.102 4.102 12 C -0.133 4.133 13 C -0.137 4.137 14 C -0.145 4.145 15 C -0.128 4.128 16 C -0.121 4.121 17 C 0.103 3.897 18 H 0.078 0.922 19 N -0.375 5.375 20 C -0.358 4.358 21 H 0.080 0.920 22 C -0.246 4.246 23 N -0.628 5.628 24 Si 0.772 3.228 25 H -0.204 1.204 26 H -0.220 1.220 27 H -0.180 1.180 28 N -0.115 5.115 29 N -0.066 5.066 30 C -0.067 4.067 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.179 0.821 35 H 0.248 0.752 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.158 0.842 39 H 0.171 0.829 40 H 0.158 0.842 41 H 0.119 0.881 42 H 0.201 0.799 43 H 0.068 0.932 44 H 0.122 0.878 45 H 0.117 0.883 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -23.880 -9.160 -15.276 29.791 hybrid contribution 0.597 1.336 0.496 1.545 sum -23.283 -7.823 -14.779 28.666 Atomic orbital electron populations 1.20541 0.83055 1.05494 1.04755 1.21997 0.97282 0.85575 1.05400 1.21727 0.90217 1.00766 1.10748 1.21684 0.94871 0.90453 1.12983 1.17185 0.82229 0.86243 0.75294 1.90754 1.87312 1.14243 1.52133 1.45596 1.04140 1.10842 1.73659 1.21669 0.83002 0.94925 0.96803 0.89094 1.21359 0.97972 0.97049 0.95447 1.20622 0.98732 0.97083 0.93769 1.20860 0.98377 0.97797 0.96274 1.21320 0.97504 0.95664 0.99210 1.21291 1.00384 1.00998 0.91869 1.20753 0.97106 0.96839 0.98118 1.21490 0.98452 0.95634 0.96572 1.19931 0.87620 0.91572 0.90573 0.92193 1.42531 1.43487 1.08231 1.43226 1.18934 1.11774 0.95272 1.09771 0.92031 1.25371 0.98381 1.02173 0.98678 1.69857 1.26775 1.36758 1.29373 0.85560 0.76915 0.81237 0.79069 1.20407 1.21974 1.17977 1.73478 1.03704 1.14245 1.20067 1.45836 1.01968 1.09395 1.49410 1.22643 1.03043 0.74752 1.06237 0.88704 0.88627 0.88845 0.82061 0.75188 0.89616 0.89270 0.84227 0.82930 0.84151 0.88071 0.79942 0.93233 0.87828 0.88304 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.10 71.24 0.72 0.23 16 2 C 0.02 0.37 6.92 41.40 0.29 0.66 16 3 C -0.21 -4.98 10.73 22.41 0.24 -4.74 16 4 C -0.04 -1.22 7.13 42.46 0.30 -0.92 16 5 C 0.60 20.58 7.82 86.75 0.68 21.25 16 6 O -0.57 -22.40 16.61 -3.95 -0.07 -22.47 16 7 N -0.69 -22.39 5.12 -441.20 -2.26 -24.65 16 8 C 0.14 5.05 2.97 45.90 0.14 5.19 16 9 H 0.09 3.56 7.55 -2.38 -0.02 3.54 16 10 C -0.08 -2.54 6.49 30.51 0.20 -2.35 16 11 C -0.10 -3.30 6.14 -19.60 -0.12 -3.42 16 12 C -0.12 -3.15 10.04 22.30 0.22 -2.93 16 13 C -0.12 -3.03 10.05 22.24 0.22 -2.80 16 14 C -0.13 -3.72 10.05 22.24 0.22 -3.50 16 15 C -0.11 -3.99 10.04 22.30 0.22 -3.76 16 16 C -0.12 -4.45 5.79 -19.43 -0.11 -4.56 16 17 C 0.21 8.62 3.15 45.08 0.14 8.76 16 18 H 0.06 2.55 8.02 -2.39 -0.02 2.53 16 19 N -0.73 -35.55 4.94 -322.51 -1.59 -37.14 16 20 C -0.23 -13.10 10.44 84.04 0.88 -12.22 16 21 H 0.06 3.86 8.06 -2.91 -0.02 3.84 16 22 C -0.05 -3.24 5.50 84.86 0.47 -2.77 16 23 N -0.98 -63.24 13.97 21.65 0.30 -62.94 16 24 Si 0.94 46.90 27.74 68.60 1.90 48.80 16 25 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 26 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 27 H -0.26 -11.66 6.52 99.48 0.65 -11.01 16 28 N -0.28 -7.08 11.67 -48.17 -0.56 -7.65 16 29 N -0.28 -4.87 3.70 -355.93 -1.32 -6.19 16 30 C 0.07 0.46 11.11 127.77 1.42 1.88 16 31 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 32 H 0.10 0.11 7.00 -2.39 -0.02 0.10 16 33 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 35 H 0.41 12.39 8.35 -92.71 -0.77 11.62 16 36 H 0.09 2.52 8.09 -2.39 -0.02 2.50 16 37 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 38 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 39 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 40 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 41 H 0.10 3.95 8.06 -2.91 -0.02 3.93 16 42 H 0.37 17.37 5.69 -92.71 -0.53 16.84 16 43 H 0.26 15.97 8.31 -92.70 -0.77 15.20 16 44 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 45 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.13 -0.02 6.95 -2.39 -0.02 -0.04 16 Total: -1.00 -80.92 387.95 2.20 -78.72 By element: Atomic # 1 Polarization: 39.84 SS G_CDS: -0.34 Total: 39.50 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 6.13 Total: -5.99 kcal Atomic # 7 Polarization: -133.13 SS G_CDS: -5.43 Total: -138.56 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.07 Total: -22.47 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.90 Total: 48.80 kcal Total: -80.92 2.20 -78.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960256461.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.568 kcal (2) G-P(sol) polarization free energy of solvation -80.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds