Wall clock time and date at job start Tue Mar 31 2020 23:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35317 * 126.12790 * 2 1 4 4 C 1.39862 * 107.91900 * 180.14692 * 3 2 1 5 5 C 1.50694 * 125.90014 * 179.86265 * 4 3 2 6 6 C 1.50700 * 109.47102 * 124.71617 * 5 4 3 7 7 O 1.21279 * 120.00250 * 0.02562 * 6 5 4 8 8 N 1.34787 * 119.99870 * 180.02562 * 6 5 4 9 9 C 1.46494 * 119.99886 * 180.02562 * 8 6 5 10 10 H 1.09003 * 110.73023 * 31.59307 * 9 8 6 11 11 C 1.54351 * 110.82104 * 267.97074 * 9 8 6 12 12 C 1.51368 * 105.16898 * 268.12044 * 11 9 8 13 13 C 1.38500 * 130.38914 * 162.81112 * 12 11 9 14 14 C 1.38107 * 120.21418 * 180.02562 * 13 12 11 15 15 C 1.38257 * 119.93335 * 0.02562 * 14 13 12 16 16 C 1.38101 * 119.93723 * 359.97438 * 15 14 13 17 17 C 1.38306 * 120.28097 * 0.03434 * 16 15 14 18 18 C 1.51374 * 130.55265 * 180.02562 * 17 16 15 19 19 H 1.08990 * 110.30174 * 316.12266 * 18 17 16 20 20 N 1.46505 * 110.30272 * 78.17894 * 18 17 16 21 21 C 1.36931 * 119.99788 * 272.22380 * 20 18 17 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 18 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 18 24 24 N 1.31617 * 119.99873 * 180.27450 * 23 21 20 25 25 Si 1.86800 * 120.00209 * 0.27770 * 23 21 20 26 26 H 1.48498 * 109.47118 * 89.99559 * 25 23 21 27 27 H 1.48499 * 109.47134 * 210.00079 * 25 23 21 28 28 H 1.48507 * 109.46904 * 329.99901 * 25 23 21 29 29 N 1.30841 * 108.20415 * 359.60032 * 4 3 2 30 30 N 1.34944 * 126.12463 * 179.70937 * 2 1 3 31 31 H 0.97006 * 126.04079 * 359.97438 * 30 2 1 32 32 H 1.09004 * 109.46920 * 270.31445 * 1 2 3 33 33 H 1.08997 * 109.47366 * 30.31342 * 1 2 3 34 34 H 1.08994 * 109.47188 * 150.31756 * 1 2 3 35 35 H 1.08000 * 126.03637 * 0.02624 * 3 2 1 36 36 H 1.09000 * 109.47149 * 4.71819 * 5 4 3 37 37 H 1.09007 * 109.47402 * 244.71722 * 5 4 3 38 38 H 0.96994 * 120.00066 * 0.02562 * 8 6 5 39 39 H 1.09000 * 110.30318 * 27.04597 * 11 9 8 40 40 H 1.09006 * 110.30264 * 149.19870 * 11 9 8 41 41 H 1.07994 * 119.89720 * 0.02562 * 13 12 11 42 42 H 1.07997 * 120.03404 * 179.97438 * 14 13 12 43 43 H 1.08003 * 120.03005 * 180.02562 * 15 14 13 44 44 H 1.08002 * 119.89230 * 180.02562 * 16 15 14 45 45 H 0.97000 * 119.99792 * 92.22174 * 20 18 17 46 46 H 0.97000 * 120.00553 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3049 1.0930 0.0000 4 6 3.6335 0.6559 -0.0034 5 6 4.8543 1.5394 -0.0075 6 6 5.7389 1.1792 1.1581 7 8 5.4106 0.2921 1.9172 8 7 6.8950 1.8430 1.3571 9 6 7.7552 1.4925 2.4899 10 1 7.6727 0.4309 2.7231 11 6 7.4179 2.3573 3.7231 12 6 8.3408 3.5536 3.6324 13 6 8.2784 4.7851 4.2631 14 6 9.2479 5.7388 4.0229 15 6 10.2842 5.4645 3.1498 16 6 10.3482 4.2372 2.5200 17 6 9.3788 3.2798 2.7581 18 6 9.2217 1.8796 2.2048 19 1 9.4123 1.8733 1.1317 20 7 10.1332 0.9580 2.8876 21 6 11.4100 0.7882 2.4229 22 1 11.7453 1.3339 1.5532 23 6 12.2755 -0.0807 3.0732 24 7 13.5044 -0.2399 2.6297 25 14 11.6960 -1.0242 4.5777 26 1 11.1098 -2.3209 4.1534 27 1 12.8487 -1.2735 5.4800 28 1 10.6685 -0.2279 5.2958 29 7 3.6334 -0.6525 0.0033 30 7 2.3026 -1.0900 0.0055 31 1 2.0055 -2.0134 0.0106 32 1 -0.3633 0.0056 1.0277 33 1 -0.3634 0.8871 -0.5187 34 1 -0.3633 -0.8928 -0.5089 35 1 1.9741 2.1210 0.0004 36 1 4.5484 2.5821 0.0771 37 1 5.4034 1.3961 -0.9382 38 1 7.1574 2.5527 0.7502 39 1 6.3770 2.6788 3.6863 40 1 7.6101 1.7999 4.6400 41 1 7.4690 5.0003 4.9449 42 1 9.1962 6.6983 4.5160 43 1 11.0435 6.2091 2.9612 44 1 11.1582 4.0235 1.8384 45 1 9.8323 0.4681 3.6689 46 1 14.1092 -0.8473 3.0839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960261908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:37 Heat of formation + Delta-G solvation = 79.814045 kcal Electronic energy + Delta-G solvation = -28621.387438 eV Core-core repulsion = 24705.654753 eV Total energy + Delta-G solvation = -3915.732686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.42061 -40.24581 -38.90874 -36.23321 -34.06799 -33.50910 -32.58726 -31.73373 -31.28629 -30.12360 -29.13798 -27.50276 -27.16130 -26.31767 -23.02540 -22.30817 -21.27461 -20.73252 -20.29235 -20.21062 -19.49616 -17.83510 -17.56873 -16.88963 -16.21589 -15.71518 -15.36728 -15.05127 -14.67747 -14.52312 -14.43937 -14.12125 -13.96242 -13.82570 -13.43073 -13.21027 -13.15640 -12.99560 -12.86223 -12.80050 -12.60388 -12.46947 -12.11134 -11.76071 -11.51157 -11.23490 -11.14637 -10.86399 -10.65426 -10.64065 -10.41892 -10.17260 -9.79435 -9.64404 -9.38446 -9.06674 -8.87826 -8.73943 -8.38268 -8.15913 -7.37751 -5.82652 -3.19528 1.74026 1.76632 1.83730 2.54085 2.70917 2.79638 3.34694 3.38287 3.41316 3.45693 4.17609 4.34128 4.45982 4.55817 4.68523 4.74465 4.95418 4.99926 5.02195 5.08967 5.26899 5.29596 5.38208 5.42583 5.43796 5.45719 5.49556 5.51535 5.57348 5.63843 5.75538 5.89726 5.93421 6.02488 6.11619 6.21454 6.29381 6.44158 6.46435 6.56480 6.74317 6.84781 6.93849 7.14155 7.17307 7.43326 7.59693 7.66082 7.89764 8.34744 8.39595 9.10961 9.83733 10.01192 11.34739 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010997 B = 0.002996 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.580336 B = 9344.886395 C =11085.505256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.079 3.921 3 C -0.266 4.266 4 C 0.089 3.911 5 C -0.061 4.061 6 C 0.516 3.484 7 O -0.524 6.524 8 N -0.715 5.715 9 C 0.135 3.865 10 H 0.107 0.893 11 C -0.088 4.088 12 C -0.098 4.098 13 C -0.116 4.116 14 C -0.130 4.130 15 C -0.127 4.127 16 C -0.085 4.085 17 C -0.095 4.095 18 C 0.212 3.788 19 H 0.072 0.928 20 N -0.729 5.729 21 C -0.246 4.246 22 H 0.093 0.907 23 C 0.011 3.989 24 N -0.928 5.928 25 Si 0.880 3.120 26 H -0.282 1.282 27 H -0.290 1.290 28 H -0.276 1.276 29 N -0.257 5.257 30 N -0.476 5.476 31 H 0.436 0.564 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.146 0.854 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.401 0.599 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.365 0.635 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.362 8.792 -5.513 26.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C -0.295 4.295 4 C -0.078 4.078 5 C -0.103 4.103 6 C 0.301 3.699 7 O -0.399 6.399 8 N -0.366 5.366 9 C 0.029 3.971 10 H 0.125 0.875 11 C -0.126 4.126 12 C -0.099 4.099 13 C -0.134 4.134 14 C -0.148 4.148 15 C -0.145 4.145 16 C -0.104 4.104 17 C -0.099 4.099 18 C 0.102 3.898 19 H 0.090 0.910 20 N -0.370 5.370 21 C -0.376 4.376 22 H 0.110 0.890 23 C -0.185 4.185 24 N -0.575 5.575 25 Si 0.710 3.290 26 H -0.208 1.208 27 H -0.216 1.216 28 H -0.202 1.202 29 N -0.080 5.080 30 N -0.185 5.185 31 H 0.280 0.720 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.164 0.836 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.235 0.765 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.138 0.862 45 H 0.198 0.802 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.630 7.046 -5.093 25.179 hybrid contribution -0.599 0.024 1.072 1.228 sum -24.229 7.069 -4.021 25.558 Atomic orbital electron populations 1.20441 0.87388 1.03784 1.03397 1.21079 0.94521 0.87857 1.01486 1.21067 0.91381 0.99118 1.17948 1.21502 0.94428 0.91606 1.00306 1.20046 0.91990 0.99240 0.99009 1.20314 0.81465 0.81906 0.86238 1.90747 1.72307 1.30113 1.46729 1.45811 1.21520 1.38871 1.30423 1.21850 0.89779 1.00225 0.85198 0.87502 1.21423 0.98357 0.93973 0.98849 1.20589 0.97169 0.94479 0.97682 1.20470 0.99401 0.93072 1.00456 1.20873 0.95472 0.98919 0.99568 1.21000 0.98402 0.97134 0.97955 1.20626 0.97795 0.92299 0.99675 1.21638 0.93888 0.96449 0.97875 1.19786 0.87503 0.85506 0.97054 0.90982 1.42630 1.11929 1.48613 1.33797 1.19000 0.86344 1.21575 1.10635 0.88954 1.24636 0.95569 0.99589 0.98714 1.69687 1.05314 1.40325 1.42159 0.86616 0.77844 0.80626 0.83924 1.20798 1.21616 1.20182 1.77472 0.95439 1.12462 1.22610 1.46355 1.04225 1.08186 1.59697 0.72043 0.90206 0.89602 0.91198 0.83591 0.86921 0.87055 0.76514 0.90829 0.89828 0.87191 0.86755 0.86561 0.86181 0.80185 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.44 10.43 36.01 0.38 -0.06 16 2 C 0.08 0.72 7.21 -82.26 -0.59 0.13 16 3 C -0.27 -2.72 10.64 -40.02 -0.43 -3.14 16 4 C 0.09 1.12 6.02 -82.41 -0.50 0.63 16 5 C -0.06 -0.62 6.28 -29.04 -0.18 -0.80 16 6 C 0.52 7.27 7.82 -10.98 -0.09 7.19 16 7 O -0.52 -9.77 15.20 5.56 0.08 -9.68 16 8 N -0.71 -9.40 5.11 -52.45 -0.27 -9.66 16 9 C 0.14 2.21 3.03 -66.53 -0.20 2.01 16 10 H 0.11 2.01 7.47 -51.93 -0.39 1.62 16 11 C -0.09 -1.36 6.49 -26.85 -0.17 -1.53 16 12 C -0.10 -1.58 6.14 -104.12 -0.64 -2.22 16 13 C -0.12 -1.69 10.04 -39.53 -0.40 -2.08 16 14 C -0.13 -1.81 10.05 -39.62 -0.40 -2.21 16 15 C -0.13 -1.90 10.05 -39.62 -0.40 -2.30 16 16 C -0.09 -1.48 10.03 -39.61 -0.40 -1.87 16 17 C -0.10 -1.69 5.78 -104.19 -0.60 -2.29 16 18 C 0.21 3.97 3.11 -68.05 -0.21 3.76 16 19 H 0.07 1.35 8.04 -51.93 -0.42 0.93 16 20 N -0.73 -16.97 4.94 -53.55 -0.26 -17.23 16 21 C -0.25 -6.75 10.44 -15.06 -0.16 -6.91 16 22 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 23 C 0.01 0.33 5.50 -17.43 -0.10 0.24 16 24 N -0.93 -28.78 13.97 55.49 0.78 -28.00 16 25 Si 0.88 22.29 27.74 -169.99 -4.72 17.58 16 26 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 28 H -0.28 -6.66 6.51 56.52 0.37 -6.29 16 29 N -0.26 -3.74 12.04 33.67 0.41 -3.33 16 30 N -0.48 -5.10 7.36 33.48 0.25 -4.85 16 31 H 0.44 3.34 8.96 -182.60 -1.64 1.71 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.11 0.76 8.12 -51.93 -0.42 0.34 16 37 H 0.11 0.93 8.14 -51.92 -0.42 0.51 16 38 H 0.40 4.17 8.66 -40.82 -0.35 3.81 16 39 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 40 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 44 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 45 H 0.36 8.55 5.67 -40.82 -0.23 8.32 16 46 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 388.50 15.07 5.85 5.85 Total: -1.00 -36.91 388.50 -10.65 -47.56 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -7.69 Total: 13.24 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -5.08 Total: -11.47 kcal Atomic # 7 Polarization: -63.98 SS G_CDS: 0.89 Total: -63.08 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.08 Total: -9.68 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.72 Total: 17.58 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.91 -10.65 -47.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960261908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.376 kcal (2) G-P(sol) polarization free energy of solvation -36.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds