Wall clock time and date at job start Tue Mar 31 2020 23:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39676 * 127.32176 * 2 1 4 4 N 1.30866 * 107.86077 * 180.23606 * 3 2 1 5 5 N 1.28436 * 110.92783 * 359.77507 * 4 3 2 6 6 C 1.46499 * 125.19054 * 179.97438 * 5 4 3 7 7 C 1.36600 * 109.62121 * 359.97438 * 5 4 3 8 8 C 1.47166 * 126.88383 * 179.97438 * 7 5 4 9 9 O 1.21626 * 120.00011 * 99.11096 * 8 7 5 10 10 N 1.34781 * 120.00027 * 279.10241 * 8 7 5 11 11 C 1.46504 * 119.99606 * 174.83158 * 10 8 7 12 12 H 1.08996 * 110.72951 * 31.60027 * 11 10 8 13 13 C 1.54353 * 110.99100 * 268.07164 * 11 10 8 14 14 C 1.51369 * 105.16970 * 268.04492 * 13 11 10 15 15 C 1.38497 * 130.38883 * 162.80961 * 14 13 11 16 16 C 1.38107 * 120.21207 * 180.02562 * 15 14 13 17 17 C 1.38250 * 119.93437 * 0.02562 * 16 15 14 18 18 C 1.38095 * 119.94071 * 359.97438 * 17 16 15 19 19 C 1.38220 * 109.75813 * 342.81457 * 14 13 11 20 20 C 1.51362 * 109.76000 * 0.02562 * 19 14 13 21 21 H 1.09004 * 110.38614 * 136.15902 * 20 19 14 22 22 N 1.46499 * 110.30151 * 258.26039 * 20 19 14 23 23 C 1.36932 * 120.00330 * 270.74930 * 22 20 19 24 24 H 1.07998 * 120.00145 * 359.97438 * 23 22 20 25 25 C 1.38815 * 119.99995 * 179.97438 * 23 22 20 26 26 N 1.31620 * 120.00092 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 119.99935 * 179.72410 * 25 23 22 28 28 H 1.48495 * 109.47218 * 180.27827 * 27 25 23 29 29 H 1.48499 * 109.46970 * 300.27798 * 27 25 23 30 30 H 1.48502 * 109.47035 * 60.27467 * 27 25 23 31 31 H 1.09006 * 109.46627 * 270.14001 * 1 2 3 32 32 H 1.08999 * 109.47118 * 30.14095 * 1 2 3 33 33 H 1.08997 * 109.47427 * 150.14358 * 1 2 3 34 34 H 1.08005 * 126.06715 * 0.04733 * 3 2 1 35 35 H 1.09000 * 109.47475 * 274.81515 * 6 5 4 36 36 H 1.09000 * 109.47483 * 34.81337 * 6 5 4 37 37 H 1.08999 * 109.47208 * 154.81765 * 6 5 4 38 38 H 0.96995 * 120.00044 * 354.84427 * 10 8 7 39 39 H 1.08992 * 110.30208 * 26.97217 * 13 11 10 40 40 H 1.09000 * 110.29468 * 149.12588 * 13 11 10 41 41 H 1.07995 * 119.89404 * 0.02857 * 15 14 13 42 42 H 1.07997 * 120.02823 * 179.97438 * 16 15 14 43 43 H 1.08005 * 120.03233 * 179.97438 * 17 16 15 44 44 H 1.07994 * 119.90094 * 180.02562 * 18 17 16 45 45 H 0.97007 * 119.99560 * 90.75021 * 22 20 19 46 46 H 0.97000 * 119.99974 * 359.72268 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1108 0.0000 4 7 3.5877 0.6748 -0.0051 5 7 3.6206 -0.6092 -0.0037 6 6 4.8391 -1.4225 -0.0089 7 6 2.3461 -1.1007 0.0033 8 6 1.9456 -2.5167 0.0065 9 8 1.6249 -3.0557 1.0486 10 7 1.9338 -3.2164 -1.1454 11 6 1.6453 -4.6526 -1.1272 12 1 0.9586 -4.8979 -0.3170 13 6 2.9456 -5.4764 -1.0127 14 6 3.3560 -5.7692 -2.4399 15 6 4.5720 -6.1841 -2.9569 16 6 4.7157 -6.3907 -4.3149 17 6 3.6429 -6.1825 -5.1617 18 6 2.4296 -5.7688 -4.6481 19 6 2.2832 -5.5619 -3.2865 20 6 1.0787 -5.1150 -2.4861 21 1 0.5750 -4.2885 -2.9875 22 7 0.1518 -6.2333 -2.2954 23 6 -0.8308 -6.4733 -3.2184 24 1 -0.9228 -5.8379 -4.0869 25 6 -1.7088 -7.5333 -3.0379 26 7 -1.5971 -8.3074 -1.9793 27 14 -3.0541 -7.8559 -4.2932 28 1 -3.8551 -9.0322 -3.8690 29 1 -3.9362 -6.6653 -4.3904 30 1 -2.4403 -8.1267 -5.6181 31 1 -0.3633 0.0025 1.0277 32 1 -0.3633 0.8887 -0.5160 33 1 -0.3634 -0.8912 -0.5116 34 1 2.0451 2.1457 0.0007 35 1 5.1841 -1.5538 -1.0345 36 1 5.6127 -0.9218 0.5733 37 1 4.6272 -2.3972 0.4306 38 1 2.1166 -2.7691 -1.9865 39 1 3.7180 -4.8957 -0.5086 40 1 2.7583 -6.4057 -0.4748 41 1 5.4106 -6.3466 -2.2961 42 1 5.6654 -6.7139 -4.7149 43 1 3.7536 -6.3432 -6.2240 44 1 1.5919 -5.6067 -5.3102 45 1 0.2341 -6.8039 -1.5152 46 1 -0.8987 -8.1397 -1.3274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960296530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:59 Heat of formation + Delta-G solvation = 87.529806 kcal Electronic energy + Delta-G solvation = -29566.118455 eV Core-core repulsion = 25650.720350 eV Total energy + Delta-G solvation = -3915.398105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.67467 -40.35547 -38.97228 -36.33697 -34.37759 -34.17199 -32.93991 -31.85893 -31.26144 -29.70737 -28.83644 -27.75466 -26.35675 -25.99259 -23.77117 -22.97199 -21.91349 -21.12479 -20.62675 -20.31172 -19.83630 -18.06869 -17.63396 -16.64196 -16.22169 -15.97065 -15.84828 -15.15586 -14.89244 -14.66448 -14.43173 -14.38201 -13.80385 -13.59938 -13.55987 -13.50799 -13.24441 -13.12237 -13.02833 -12.83228 -12.76649 -12.64978 -12.27484 -11.77844 -11.52079 -11.24059 -10.90294 -10.80329 -10.78719 -10.76484 -10.49713 -10.24987 -10.05775 -9.41072 -9.32871 -9.18052 -9.03075 -8.82893 -8.47579 -8.25408 -7.22652 -6.21417 -3.23703 1.47963 1.67502 1.73731 1.96695 2.49767 2.61504 3.07780 3.46492 3.49337 3.66972 4.07774 4.23906 4.43879 4.55921 4.66420 4.78678 4.84641 4.88180 4.98643 5.05979 5.19320 5.22278 5.28925 5.34222 5.36785 5.44857 5.47825 5.60024 5.61748 5.69460 5.80103 5.85056 5.90287 5.95039 6.00144 6.06829 6.18968 6.32388 6.39700 6.44166 6.53193 6.57195 6.74443 6.83525 7.07132 7.32521 7.35820 7.67232 7.87258 8.00452 8.62757 9.04275 9.91338 10.03278 11.25883 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010265 B = 0.003732 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.047282 B = 7501.164555 C = 9203.993127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.154 4.154 3 C 0.004 3.996 4 N -0.285 5.285 5 N -0.274 5.274 6 C 0.087 3.913 7 C -0.031 4.031 8 C 0.593 3.407 9 O -0.517 6.517 10 N -0.699 5.699 11 C 0.132 3.868 12 H 0.112 0.888 13 C -0.086 4.086 14 C -0.101 4.101 15 C -0.114 4.114 16 C -0.131 4.131 17 C -0.126 4.126 18 C -0.088 4.088 19 C -0.094 4.094 20 C 0.213 3.787 21 H 0.066 0.934 22 N -0.714 5.714 23 C -0.337 4.337 24 H 0.067 0.933 25 C -0.037 4.037 26 N -0.936 5.936 27 Si 1.079 2.921 28 H -0.284 1.284 29 H -0.293 1.293 30 H -0.294 1.294 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.186 0.814 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.403 0.597 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.371 0.629 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.230 14.493 0.014 19.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.165 4.165 3 C -0.174 4.174 4 N -0.115 5.115 5 N -0.062 5.062 6 C -0.053 4.053 7 C -0.159 4.159 8 C 0.376 3.624 9 O -0.390 6.390 10 N -0.350 5.350 11 C 0.026 3.974 12 H 0.130 0.870 13 C -0.124 4.124 14 C -0.102 4.102 15 C -0.132 4.132 16 C -0.149 4.149 17 C -0.144 4.144 18 C -0.107 4.107 19 C -0.098 4.098 20 C 0.102 3.898 21 H 0.084 0.916 22 N -0.354 5.354 23 C -0.467 4.467 24 H 0.085 0.915 25 C -0.235 4.235 26 N -0.580 5.580 27 Si 0.909 3.091 28 H -0.209 1.209 29 H -0.221 1.221 30 H -0.222 1.222 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.203 0.797 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.238 0.762 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.205 0.795 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.879 13.436 0.227 18.613 hybrid contribution 0.879 0.599 0.027 1.064 sum 13.758 14.035 0.253 19.655 Atomic orbital electron populations 1.20155 0.88197 1.02872 1.02574 1.20727 0.96998 0.90642 1.08094 1.23441 0.87708 0.99900 1.06319 1.73116 1.24499 0.93220 1.20714 1.45493 1.05423 1.03711 1.51576 1.22180 0.83876 0.94603 1.04671 1.21380 0.86034 0.94767 1.13752 1.16995 0.77985 0.83247 0.84219 1.90867 1.46904 1.69605 1.31646 1.45889 1.70611 1.09557 1.08918 1.22033 0.96507 0.78081 1.00760 0.86998 1.21410 0.96945 1.00388 0.93645 1.20487 0.93892 1.00230 0.95553 1.20470 0.96356 1.01308 0.95069 1.20869 0.98622 1.02040 0.93374 1.20996 0.93340 1.00700 0.99331 1.20636 0.96815 0.98694 0.94577 1.21708 0.96249 0.98254 0.93545 1.19742 0.87904 0.92024 0.90167 0.91582 1.42264 1.33357 1.32564 1.27210 1.19980 1.08885 1.14266 1.03579 0.91512 1.25803 1.01617 0.94158 1.01948 1.70888 1.35120 1.40235 1.11728 0.83260 0.75515 0.76134 0.74151 1.20929 1.22062 1.22164 0.91038 0.90947 0.91539 0.79741 0.89417 0.88376 0.88931 0.76246 0.91202 0.89276 0.87119 0.86676 0.86568 0.86465 0.79504 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.28 36.01 0.37 -0.48 16 2 C -0.15 -1.88 6.30 -104.02 -0.65 -2.54 16 3 C 0.00 0.04 12.00 -17.43 -0.21 -0.17 16 4 N -0.28 -3.51 11.90 30.59 0.36 -3.14 16 5 N -0.27 -3.24 3.75 -63.88 -0.24 -3.47 16 6 C 0.09 0.71 11.21 59.85 0.67 1.39 16 7 C -0.03 -0.41 6.71 -82.06 -0.55 -0.96 16 8 C 0.59 8.71 6.77 -12.63 -0.09 8.63 16 9 O -0.52 -9.44 16.72 5.25 0.09 -9.35 16 10 N -0.70 -9.48 5.11 -53.60 -0.27 -9.75 16 11 C 0.13 2.11 3.07 -66.53 -0.20 1.90 16 12 H 0.11 2.06 7.40 -51.93 -0.38 1.68 16 13 C -0.09 -1.26 6.49 -26.85 -0.17 -1.43 16 14 C -0.10 -1.57 6.14 -104.20 -0.64 -2.21 16 15 C -0.11 -1.60 10.04 -39.53 -0.40 -2.00 16 16 C -0.13 -1.77 10.05 -39.62 -0.40 -2.17 16 17 C -0.13 -1.84 10.04 -39.63 -0.40 -2.23 16 18 C -0.09 -1.50 10.04 -39.54 -0.40 -1.90 16 19 C -0.09 -1.64 5.77 -104.21 -0.60 -2.24 16 20 C 0.21 3.98 3.13 -68.06 -0.21 3.76 16 21 H 0.07 1.25 8.03 -51.93 -0.42 0.83 16 22 N -0.71 -16.83 5.13 -53.55 -0.27 -17.10 16 23 C -0.34 -8.95 9.96 -15.06 -0.15 -9.10 16 24 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 25 C -0.04 -1.03 5.50 -17.43 -0.10 -1.12 16 26 N -0.94 -28.11 13.70 55.49 0.76 -27.35 16 27 Si 1.08 25.12 29.92 -169.99 -5.09 20.04 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 30 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.19 1.43 8.06 -52.48 -0.42 1.00 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.75 7.66 -51.93 -0.40 0.35 16 38 H 0.40 4.82 8.64 -40.82 -0.35 4.47 16 39 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 40 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 44 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 45 H 0.37 9.15 6.66 -40.82 -0.27 8.88 16 46 H 0.26 7.59 6.77 -40.82 -0.28 7.31 16 LS Contribution 391.19 15.07 5.90 5.90 Total: -1.00 -33.70 391.19 -9.27 -42.97 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -6.37 Total: 14.15 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -4.13 Total: -12.87 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: 0.34 Total: -60.82 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.09 Total: 20.04 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.70 -9.27 -42.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960296530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.495 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds