Wall clock time and date at job start Tue Mar 31 2020 23:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39676 * 127.32176 * 2 1 4 4 N 1.30866 * 107.86077 * 180.23606 * 3 2 1 5 5 N 1.28436 * 110.92783 * 359.77507 * 4 3 2 6 6 C 1.46499 * 125.19054 * 179.97438 * 5 4 3 7 7 C 1.36600 * 109.62121 * 359.97438 * 5 4 3 8 8 C 1.47166 * 126.88383 * 179.97438 * 7 5 4 9 9 O 1.21626 * 120.00011 * 99.11096 * 8 7 5 10 10 N 1.34781 * 120.00027 * 279.10241 * 8 7 5 11 11 C 1.46504 * 119.99606 * 174.83158 * 10 8 7 12 12 H 1.08996 * 110.72951 * 31.60027 * 11 10 8 13 13 C 1.54353 * 110.99100 * 268.07164 * 11 10 8 14 14 C 1.51369 * 105.16970 * 268.04492 * 13 11 10 15 15 C 1.38497 * 130.38883 * 162.80961 * 14 13 11 16 16 C 1.38107 * 120.21207 * 180.02562 * 15 14 13 17 17 C 1.38250 * 119.93437 * 0.02562 * 16 15 14 18 18 C 1.38095 * 119.94071 * 359.97438 * 17 16 15 19 19 C 1.38220 * 109.75813 * 342.81457 * 14 13 11 20 20 C 1.51362 * 109.76000 * 0.02562 * 19 14 13 21 21 H 1.09004 * 110.38614 * 136.15902 * 20 19 14 22 22 N 1.46499 * 110.30151 * 258.26039 * 20 19 14 23 23 C 1.36932 * 120.00330 * 270.74930 * 22 20 19 24 24 H 1.07998 * 120.00145 * 359.97438 * 23 22 20 25 25 C 1.38815 * 119.99995 * 179.97438 * 23 22 20 26 26 N 1.31620 * 120.00092 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 119.99935 * 179.72410 * 25 23 22 28 28 H 1.48495 * 109.47218 * 180.27827 * 27 25 23 29 29 H 1.48499 * 109.46970 * 300.27798 * 27 25 23 30 30 H 1.48502 * 109.47035 * 60.27467 * 27 25 23 31 31 H 1.09006 * 109.46627 * 270.14001 * 1 2 3 32 32 H 1.08999 * 109.47118 * 30.14095 * 1 2 3 33 33 H 1.08997 * 109.47427 * 150.14358 * 1 2 3 34 34 H 1.08005 * 126.06715 * 0.04733 * 3 2 1 35 35 H 1.09000 * 109.47475 * 274.81515 * 6 5 4 36 36 H 1.09000 * 109.47483 * 34.81337 * 6 5 4 37 37 H 1.08999 * 109.47208 * 154.81765 * 6 5 4 38 38 H 0.96995 * 120.00044 * 354.84427 * 10 8 7 39 39 H 1.08992 * 110.30208 * 26.97217 * 13 11 10 40 40 H 1.09000 * 110.29468 * 149.12588 * 13 11 10 41 41 H 1.07995 * 119.89404 * 0.02857 * 15 14 13 42 42 H 1.07997 * 120.02823 * 179.97438 * 16 15 14 43 43 H 1.08005 * 120.03233 * 179.97438 * 17 16 15 44 44 H 1.07994 * 119.90094 * 180.02562 * 18 17 16 45 45 H 0.97007 * 119.99560 * 90.75021 * 22 20 19 46 46 H 0.97000 * 119.99974 * 359.72268 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1108 0.0000 4 7 3.5877 0.6748 -0.0051 5 7 3.6206 -0.6092 -0.0037 6 6 4.8391 -1.4225 -0.0089 7 6 2.3461 -1.1007 0.0033 8 6 1.9456 -2.5167 0.0065 9 8 1.6249 -3.0557 1.0486 10 7 1.9338 -3.2164 -1.1454 11 6 1.6453 -4.6526 -1.1272 12 1 0.9586 -4.8979 -0.3170 13 6 2.9456 -5.4764 -1.0127 14 6 3.3560 -5.7692 -2.4399 15 6 4.5720 -6.1841 -2.9569 16 6 4.7157 -6.3907 -4.3149 17 6 3.6429 -6.1825 -5.1617 18 6 2.4296 -5.7688 -4.6481 19 6 2.2832 -5.5619 -3.2865 20 6 1.0787 -5.1150 -2.4861 21 1 0.5750 -4.2885 -2.9875 22 7 0.1518 -6.2333 -2.2954 23 6 -0.8308 -6.4733 -3.2184 24 1 -0.9228 -5.8379 -4.0869 25 6 -1.7088 -7.5333 -3.0379 26 7 -1.5971 -8.3074 -1.9793 27 14 -3.0541 -7.8559 -4.2932 28 1 -3.8551 -9.0322 -3.8690 29 1 -3.9362 -6.6653 -4.3904 30 1 -2.4403 -8.1267 -5.6181 31 1 -0.3633 0.0025 1.0277 32 1 -0.3633 0.8887 -0.5160 33 1 -0.3634 -0.8912 -0.5116 34 1 2.0451 2.1457 0.0007 35 1 5.1841 -1.5538 -1.0345 36 1 5.6127 -0.9218 0.5733 37 1 4.6272 -2.3972 0.4306 38 1 2.1166 -2.7691 -1.9865 39 1 3.7180 -4.8957 -0.5086 40 1 2.7583 -6.4057 -0.4748 41 1 5.4106 -6.3466 -2.2961 42 1 5.6654 -6.7139 -4.7149 43 1 3.7536 -6.3432 -6.2240 44 1 1.5919 -5.6067 -5.3102 45 1 0.2341 -6.8039 -1.5152 46 1 -0.8987 -8.1397 -1.3274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960296530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:58 Heat of formation + Delta-G solvation = 66.047529 kcal Electronic energy + Delta-G solvation = -29567.049996 eV Core-core repulsion = 25650.720350 eV Total energy + Delta-G solvation = -3916.329647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.58159 -41.64141 -40.21409 -37.70188 -36.10186 -35.00545 -34.28669 -32.87548 -32.70580 -31.25666 -29.82999 -28.85404 -27.57153 -27.11481 -25.45330 -24.39434 -23.11143 -22.00715 -21.79402 -21.65863 -20.97569 -19.55055 -19.09385 -17.82844 -17.53031 -17.05690 -16.88614 -16.44033 -16.17878 -15.98526 -15.77406 -15.73286 -15.43463 -15.04052 -14.50462 -14.44056 -14.34944 -14.29899 -14.23516 -14.02698 -13.55568 -13.39988 -13.13073 -13.10162 -12.97596 -12.70846 -12.65262 -12.31575 -12.26530 -11.92173 -11.77046 -11.72686 -11.49885 -11.32818 -11.01259 -10.44334 -10.23579 -9.73515 -9.69684 -9.50125 -9.19550 -8.40731 -5.37004 0.47055 0.50046 0.53297 0.94908 1.54589 1.58037 1.62993 1.66900 1.82818 1.99204 2.68648 2.87603 3.24442 3.35594 3.41444 3.49660 3.61554 3.88284 3.93388 4.05233 4.08828 4.15072 4.19297 4.21905 4.25214 4.33903 4.40272 4.49061 4.57391 4.59861 4.65094 4.68503 4.77509 4.79506 4.86897 5.03760 5.10453 5.12129 5.18930 5.26519 5.52828 5.55260 5.58163 5.64812 5.70864 5.81331 6.15572 6.18368 6.45963 6.82412 6.98439 7.01240 7.90116 8.01422 9.10150 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010265 B = 0.003732 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.047282 B = 7501.164555 C = 9203.993127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.162 4.162 3 C 0.005 3.995 4 N -0.295 5.295 5 N -0.273 5.273 6 C 0.077 3.923 7 C -0.053 4.053 8 C 0.603 3.397 9 O -0.558 6.558 10 N -0.685 5.685 11 C 0.144 3.856 12 H 0.083 0.917 13 C -0.078 4.078 14 C -0.103 4.103 15 C -0.113 4.113 16 C -0.121 4.121 17 C -0.127 4.127 18 C -0.112 4.112 19 C -0.118 4.118 20 C 0.212 3.788 21 H 0.057 0.943 22 N -0.729 5.729 23 C -0.326 4.326 24 H 0.069 0.931 25 C -0.098 4.098 26 N -0.973 5.973 27 Si 1.124 2.876 28 H -0.295 1.295 29 H -0.277 1.277 30 H -0.277 1.277 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.048 0.952 34 H 0.217 0.783 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.413 0.587 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.141 0.859 42 H 0.152 0.848 43 H 0.141 0.859 44 H 0.104 0.896 45 H 0.361 0.639 46 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.686 15.918 -1.386 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.173 4.173 3 C -0.172 4.172 4 N -0.126 5.126 5 N -0.061 5.061 6 C -0.062 4.062 7 C -0.182 4.182 8 C 0.387 3.613 9 O -0.434 6.434 10 N -0.335 5.335 11 C 0.038 3.962 12 H 0.101 0.899 13 C -0.116 4.116 14 C -0.104 4.104 15 C -0.131 4.131 16 C -0.139 4.139 17 C -0.145 4.145 18 C -0.131 4.131 19 C -0.121 4.121 20 C 0.103 3.897 21 H 0.075 0.925 22 N -0.369 5.369 23 C -0.457 4.457 24 H 0.087 0.913 25 C -0.289 4.289 26 N -0.620 5.620 27 Si 0.949 3.051 28 H -0.221 1.221 29 H -0.203 1.203 30 H -0.203 1.203 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.067 0.933 34 H 0.234 0.766 35 H 0.124 0.876 36 H 0.134 0.866 37 H 0.109 0.891 38 H 0.249 0.751 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.159 0.841 42 H 0.170 0.830 43 H 0.159 0.841 44 H 0.122 0.878 45 H 0.194 0.806 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 15.401 14.926 -1.220 21.481 hybrid contribution 0.248 0.268 0.425 0.560 sum 15.649 15.194 -0.795 21.826 Atomic orbital electron populations 1.20193 0.87506 1.03307 1.02699 1.21044 0.97725 0.90836 1.07719 1.23961 0.86962 1.01031 1.05207 1.73118 1.25110 0.93362 1.20988 1.45793 1.05661 1.03777 1.50914 1.22478 0.83126 0.94348 1.06216 1.21219 0.87362 0.93817 1.15772 1.17136 0.76900 0.83754 0.83506 1.90847 1.48845 1.70666 1.33042 1.45697 1.69975 1.08534 1.09343 1.21640 0.96836 0.79619 0.98114 0.89908 1.21322 0.96508 1.00006 0.93742 1.20592 0.94268 1.00405 0.95155 1.20860 0.96325 0.99906 0.95986 1.21331 0.99618 0.99993 0.92976 1.21304 0.92530 0.99670 1.00950 1.20756 0.97869 1.00127 0.94303 1.21451 0.96126 1.00308 0.94206 1.19833 0.87919 0.90202 0.91772 0.92548 1.42371 1.34423 1.33626 1.26522 1.20269 1.08796 1.13280 1.03370 0.91347 1.27119 1.04081 0.94654 1.03075 1.70993 1.36000 1.41968 1.13040 0.82678 0.73491 0.76068 0.72864 1.22093 1.20282 1.20333 0.91062 0.88236 0.93339 0.76611 0.87608 0.86623 0.89121 0.75061 0.88849 0.90093 0.84075 0.83014 0.84116 0.87769 0.80617 0.94584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 10.28 71.24 0.73 -0.90 16 2 C -0.16 -3.81 6.30 -19.48 -0.12 -3.93 16 3 C 0.00 0.10 12.00 85.18 1.02 1.12 16 4 N -0.29 -6.68 11.90 -57.13 -0.68 -7.36 16 5 N -0.27 -6.06 3.75 -356.02 -1.33 -7.39 16 6 C 0.08 1.12 11.21 127.77 1.43 2.56 16 7 C -0.05 -1.38 6.71 40.79 0.27 -1.10 16 8 C 0.60 17.97 6.77 86.59 0.59 18.56 16 9 O -0.56 -21.08 16.72 -4.11 -0.07 -21.15 16 10 N -0.68 -18.83 5.11 -441.73 -2.26 -21.08 16 11 C 0.14 4.77 3.07 45.90 0.14 4.91 16 12 H 0.08 3.27 7.40 -2.39 -0.02 3.25 16 13 C -0.08 -2.26 6.49 30.52 0.20 -2.06 16 14 C -0.10 -3.09 6.14 -19.59 -0.12 -3.21 16 15 C -0.11 -2.78 10.04 22.30 0.22 -2.56 16 16 C -0.12 -2.80 10.05 22.24 0.22 -2.58 16 17 C -0.13 -3.38 10.04 22.24 0.22 -3.15 16 18 C -0.11 -3.74 10.04 22.30 0.22 -3.52 16 19 C -0.12 -4.12 5.77 -19.59 -0.11 -4.24 16 20 C 0.21 8.21 3.13 44.91 0.14 8.35 16 21 H 0.06 2.23 8.03 -2.38 -0.02 2.21 16 22 N -0.73 -35.93 5.13 -323.35 -1.66 -37.58 16 23 C -0.33 -17.83 9.96 84.03 0.84 -16.99 16 24 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 25 C -0.10 -5.59 5.50 84.86 0.47 -5.12 16 26 N -0.97 -60.61 13.70 21.65 0.30 -60.31 16 27 Si 1.12 51.42 29.92 68.60 2.05 53.47 16 28 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 29 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 30 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 31 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.15 8.07 -2.39 -0.02 1.13 16 34 H 0.22 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 1.34 7.66 -2.39 -0.02 1.33 16 38 H 0.41 9.84 8.64 -92.71 -0.80 9.04 16 39 H 0.09 2.25 8.09 -2.39 -0.02 2.23 16 40 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 42 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 43 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 44 H 0.10 3.64 8.06 -2.91 -0.02 3.62 16 45 H 0.36 18.92 6.66 -92.70 -0.62 18.30 16 46 H 0.24 15.20 6.77 -92.71 -0.63 14.57 16 Total: -1.00 -75.38 391.19 2.46 -72.92 By element: Atomic # 1 Polarization: 42.62 SS G_CDS: -0.26 Total: 42.36 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 6.37 Total: -13.87 kcal Atomic # 7 Polarization: -128.10 SS G_CDS: -5.63 Total: -133.73 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.07 Total: -21.15 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.05 Total: 53.47 kcal Total: -75.38 2.46 -72.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960296530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.968 kcal (2) G-P(sol) polarization free energy of solvation -75.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds