Wall clock time and date at job start Tue Mar 31 2020 23:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36018 * 120.33807 * 2 1 4 4 C 1.40467 * 119.69285 * 180.02562 * 3 2 1 5 5 C 1.34954 * 120.30258 * 0.02562 * 4 3 2 6 6 N 1.36476 * 120.60801 * 0.02562 * 5 4 3 7 7 C 1.36837 * 132.56894 * 180.30300 * 6 5 4 8 8 C 1.35105 * 107.18015 * 180.10467 * 7 6 5 9 9 C 1.50700 * 125.68769 * 179.88092 * 8 7 6 10 10 C 1.50699 * 109.46995 * 124.71675 * 9 8 7 11 11 O 1.21275 * 120.00096 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99730 * 179.72155 * 10 9 8 13 13 C 1.46504 * 120.00160 * 180.27479 * 12 10 9 14 14 H 1.09005 * 115.51349 * 350.58578 * 13 12 10 15 15 C 1.52999 * 117.44333 * 205.17038 * 13 12 10 16 16 H 1.08996 * 119.53988 * 5.71458 * 15 13 12 17 17 C 1.54394 * 118.11949 * 160.80776 * 15 13 12 18 18 N 1.48150 * 104.61492 * 87.19066 * 17 15 13 19 19 C 1.36938 * 127.83627 * 140.41358 * 18 17 15 20 20 H 1.08004 * 120.00002 * 340.86880 * 19 18 17 21 21 C 1.38813 * 119.99960 * 160.86585 * 19 18 17 22 22 N 1.31616 * 119.99855 * 163.43476 * 21 19 18 23 23 Si 1.86792 * 119.99898 * 343.43784 * 21 19 18 24 24 H 1.48503 * 109.47402 * 85.38581 * 23 21 19 25 25 H 1.48509 * 109.46905 * 205.38303 * 23 21 19 26 26 H 1.48496 * 109.47571 * 325.38123 * 23 21 19 27 27 C 1.48147 * 104.32518 * 320.41326 * 18 17 15 28 28 C 1.52995 * 117.44463 * 136.00127 * 13 12 10 29 29 H 1.09010 * 119.54063 * 355.88204 * 28 13 12 30 30 N 1.33517 * 108.62555 * 359.61706 * 8 7 6 31 31 C 1.32560 * 109.15475 * 0.24155 * 30 8 7 32 32 H 1.09006 * 109.47019 * 269.93722 * 1 2 3 33 33 H 1.09002 * 109.46912 * 29.93958 * 1 2 3 34 34 H 1.09001 * 109.46994 * 149.93782 * 1 2 3 35 35 H 1.08001 * 120.14947 * 0.04135 * 3 2 1 36 36 H 1.08004 * 119.85007 * 180.02562 * 4 3 2 37 37 H 1.07998 * 119.69276 * 180.02562 * 5 4 3 38 38 H 1.08003 * 126.41432 * 359.96292 * 7 6 5 39 39 H 1.08996 * 109.47326 * 4.71666 * 9 8 7 40 40 H 1.09002 * 109.47088 * 244.71541 * 9 8 7 41 41 H 0.97006 * 120.00120 * 0.28042 * 12 10 9 42 42 H 1.09002 * 110.40568 * 205.97408 * 17 15 13 43 43 H 1.08993 * 110.40661 * 328.40776 * 17 15 13 44 44 H 0.96997 * 120.00446 * 180.02562 * 22 21 19 45 45 H 1.08994 * 110.40480 * 158.37160 * 27 18 17 46 46 H 1.08995 * 110.40628 * 280.68583 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1940 1.1739 0.0000 4 6 3.5986 1.1581 -0.0005 5 6 4.2664 -0.0146 -0.0016 6 7 3.5895 -1.1997 -0.0027 7 6 4.0054 -2.5033 0.0015 8 6 2.8971 -3.2759 -0.0046 9 6 2.8757 -4.7827 -0.0055 10 6 2.0535 -5.2742 1.1579 11 8 1.5362 -4.4791 1.9136 12 7 1.8889 -6.5971 1.3555 13 6 1.0846 -7.0749 2.4830 14 1 0.7876 -6.3132 3.2040 15 6 1.3855 -8.4754 3.0205 16 1 2.2340 -9.0325 2.6234 17 6 0.8993 -8.8291 4.4425 18 7 -0.4840 -9.3241 4.2523 19 6 -1.0965 -10.3708 4.8883 20 1 -0.5020 -11.1249 5.3825 21 6 -2.4816 -10.4625 4.8978 22 7 -3.0635 -11.6013 5.2088 23 14 -3.5194 -8.9697 4.4692 24 1 -3.6852 -8.8886 2.9957 25 1 -4.8528 -9.0930 5.1113 26 1 -2.8455 -7.7408 4.9598 27 6 -1.0543 -8.4299 3.2180 28 6 0.0986 -8.2133 2.2135 29 1 -0.0275 -8.5857 1.1968 30 7 1.8237 -2.4818 -0.0039 31 6 2.2189 -1.2164 -0.0027 32 1 -0.3633 -0.0011 1.0277 33 1 -0.3633 0.8905 -0.5129 34 1 -0.3633 -0.8894 -0.5148 35 1 1.6620 2.1138 0.0007 36 1 4.1467 2.0887 -0.0001 37 1 5.3464 -0.0153 -0.0016 38 1 5.0283 -2.8499 0.0063 39 1 3.8942 -5.1606 0.0840 40 1 2.4365 -5.1393 -0.9372 41 1 2.3030 -7.2331 0.7513 42 1 1.5259 -9.6089 4.8754 43 1 0.9019 -7.9425 5.0765 44 1 -4.0313 -11.6656 5.2151 45 1 -1.9017 -8.9085 2.7271 46 1 -1.3587 -7.4817 3.6612 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962061728.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:00 Heat of formation + Delta-G solvation = 123.698368 kcal Electronic energy + Delta-G solvation = -28044.130421 eV Core-core repulsion = 24130.300702 eV Total energy + Delta-G solvation = -3913.829719 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.07283 -39.90020 -38.62602 -37.71750 -34.81977 -34.54631 -32.81452 -32.17755 -30.86158 -30.35363 -28.09225 -27.76307 -27.26570 -25.60449 -23.14952 -22.77788 -21.91479 -21.05099 -20.62931 -20.11311 -19.54577 -17.88443 -17.35194 -16.97667 -16.86282 -16.43884 -16.06312 -15.83506 -15.17091 -15.06945 -14.54694 -14.33156 -13.96870 -13.63557 -13.56259 -13.52555 -13.22650 -13.03842 -12.86943 -12.62532 -12.42888 -12.17695 -12.10694 -12.01893 -11.82697 -11.59640 -11.18393 -10.97708 -10.86501 -10.68080 -10.21464 -10.16412 -10.02539 -9.78214 -9.53391 -9.29437 -8.91914 -8.78627 -8.46752 -8.04539 -7.09697 -5.91236 -3.25342 0.42522 0.98927 2.29294 2.51275 2.68173 3.10488 3.31760 3.36943 3.51941 3.54272 3.85510 4.05183 4.14639 4.32237 4.43437 4.56398 4.59649 4.74867 4.83633 4.89664 4.93642 5.03414 5.16062 5.17416 5.20310 5.24037 5.37455 5.40771 5.42271 5.53909 5.58119 5.64203 5.74371 5.80167 5.81065 5.97900 6.11812 6.20887 6.28160 6.36201 6.51687 6.58679 6.67717 6.70212 6.80282 6.82614 7.56102 7.61569 7.70694 8.32513 8.33543 8.79462 9.67956 10.22257 11.24924 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020312 B = 0.002114 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.180268 B =13238.811411 C =14204.237059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.035 4.035 3 C -0.120 4.120 4 C -0.137 4.137 5 C 0.044 3.956 6 N -0.361 5.361 7 C -0.093 4.093 8 C 0.077 3.923 9 C -0.058 4.058 10 C 0.518 3.482 11 O -0.516 6.516 12 N -0.702 5.702 13 C 0.103 3.897 14 H 0.131 0.869 15 C -0.177 4.177 16 H 0.110 0.890 17 C 0.158 3.842 18 N -0.605 5.605 19 C -0.235 4.235 20 H 0.095 0.905 21 C 0.018 3.982 22 N -0.914 5.914 23 Si 0.888 3.112 24 H -0.286 1.286 25 H -0.302 1.302 26 H -0.270 1.270 27 C 0.130 3.870 28 C -0.175 4.175 29 H 0.109 0.891 30 N -0.456 5.456 31 C 0.222 3.778 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.140 0.860 36 H 0.149 0.851 37 H 0.161 0.839 38 H 0.183 0.817 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.399 0.601 42 H 0.062 0.938 43 H 0.033 0.967 44 H 0.264 0.736 45 H 0.071 0.929 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.550 25.063 -16.110 35.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.038 4.038 3 C -0.143 4.143 4 C -0.158 4.158 5 C -0.077 4.077 6 N -0.032 5.032 7 C -0.224 4.224 8 C -0.057 4.057 9 C -0.099 4.099 10 C 0.303 3.697 11 O -0.389 6.389 12 N -0.352 5.352 13 C -0.003 4.003 14 H 0.149 0.851 15 C -0.199 4.199 16 H 0.128 0.872 17 C 0.031 3.969 18 N -0.330 5.330 19 C -0.362 4.362 20 H 0.113 0.887 21 C -0.180 4.180 22 N -0.559 5.559 23 Si 0.718 3.282 24 H -0.213 1.213 25 H -0.230 1.230 26 H -0.195 1.195 27 C 0.004 3.996 28 C -0.197 4.197 29 H 0.127 0.873 30 N -0.174 5.174 31 C -0.021 4.021 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.158 0.842 36 H 0.167 0.833 37 H 0.178 0.822 38 H 0.200 0.800 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.233 0.767 42 H 0.080 0.920 43 H 0.050 0.950 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 17.200 25.135 -15.428 34.141 hybrid contribution 0.612 0.574 -0.622 1.044 sum 17.812 25.709 -16.049 35.154 Atomic orbital electron populations 1.20691 0.88854 1.03488 1.03325 1.19081 0.97079 0.88397 0.99207 1.20902 0.93715 0.97841 1.01881 1.20760 0.94803 0.97083 1.03128 1.21543 0.98520 0.83335 1.04342 1.42752 1.08823 1.05917 1.45734 1.22302 1.00814 0.80709 1.18610 1.20043 0.88364 0.94867 1.02444 1.19974 1.01940 0.89106 0.98917 1.20281 0.81224 0.82002 0.86221 1.90759 1.47514 1.54348 1.46323 1.45332 1.52786 1.06835 1.30278 1.21772 0.96162 0.91531 0.90875 0.85111 1.24286 0.99359 0.97310 0.98901 0.87221 1.21129 0.87297 0.97193 0.91240 1.45546 1.10010 1.34932 1.42464 1.18656 0.89934 0.98106 1.29477 0.88728 1.25008 0.96277 0.97112 0.99593 1.69767 1.09835 1.23601 1.52656 0.86914 0.79483 0.84463 0.77303 1.21337 1.23035 1.19542 1.21670 0.94446 0.94392 0.89102 1.24331 0.93273 1.02184 0.99874 0.87301 1.70643 1.29091 0.97507 1.20191 1.20788 0.80077 0.94382 1.06896 0.90293 0.90977 0.90214 0.84169 0.83323 0.82188 0.80029 0.87272 0.87163 0.76713 0.91971 0.94957 0.92659 0.91064 0.94498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.03 36.01 0.36 -0.59 16 2 C -0.04 -0.36 5.90 -104.40 -0.62 -0.98 16 3 C -0.12 -0.86 9.72 -39.54 -0.38 -1.24 16 4 C -0.14 -0.80 9.98 -39.91 -0.40 -1.20 16 5 C 0.04 0.31 10.95 -16.65 -0.18 0.13 16 6 N -0.36 -3.77 2.94 -62.66 -0.18 -3.95 16 7 C -0.09 -0.91 11.63 -16.43 -0.19 -1.10 16 8 C 0.08 0.94 5.85 -82.97 -0.49 0.46 16 9 C -0.06 -0.55 6.26 -29.03 -0.18 -0.73 16 10 C 0.52 7.10 7.82 -10.99 -0.09 7.02 16 11 O -0.52 -9.71 15.12 5.56 0.08 -9.62 16 12 N -0.70 -8.72 5.56 -53.81 -0.30 -9.02 16 13 C 0.10 1.65 5.98 -67.93 -0.41 1.24 16 14 H 0.13 2.42 7.40 -51.93 -0.38 2.04 16 15 C -0.18 -2.93 7.05 -89.29 -0.63 -3.56 16 16 H 0.11 1.55 8.14 -51.93 -0.42 1.12 16 17 C 0.16 3.17 7.04 -2.40 -0.02 3.15 16 18 N -0.61 -14.99 3.19 -168.83 -0.54 -15.53 16 19 C -0.24 -6.77 10.78 -15.06 -0.16 -6.93 16 20 H 0.10 2.86 8.06 -52.48 -0.42 2.44 16 21 C 0.02 0.54 5.48 -17.43 -0.10 0.45 16 22 N -0.91 -28.62 13.97 55.49 0.78 -27.85 16 23 Si 0.89 23.31 24.49 -169.99 -4.16 19.15 16 24 H -0.29 -7.25 6.36 56.52 0.36 -6.89 16 25 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 26 H -0.27 -7.02 6.33 56.52 0.36 -6.66 16 27 C 0.13 2.94 4.50 -2.38 -0.01 2.93 16 28 C -0.18 -3.14 7.05 -89.27 -0.63 -3.77 16 29 H 0.11 1.78 8.14 -51.92 -0.42 1.36 16 30 N -0.46 -6.83 10.66 -9.00 -0.10 -6.92 16 31 C 0.22 2.86 7.52 -156.04 -1.17 1.69 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.08 0.84 8.10 -51.93 -0.42 0.41 16 35 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.15 0.37 8.06 -52.48 -0.42 -0.05 16 37 H 0.16 0.56 8.06 -52.49 -0.42 0.13 16 38 H 0.18 1.05 8.06 -52.48 -0.42 0.63 16 39 H 0.11 0.60 8.10 -51.93 -0.42 0.18 16 40 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.40 3.54 8.83 -40.82 -0.36 3.18 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 45 H 0.07 1.73 5.06 -51.93 -0.26 1.46 16 46 H 0.04 0.86 6.79 -51.93 -0.35 0.51 16 LS Contribution 379.09 15.07 5.71 5.71 Total: -1.00 -38.91 379.09 -10.49 -49.40 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.49 Total: 1.69 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -5.29 Total: -3.05 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -0.34 Total: -63.28 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -4.16 Total: 19.15 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.91 -10.49 -49.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962061728.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.100 kcal (2) G-P(sol) polarization free energy of solvation -38.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds