Wall clock time and date at job start Tue Mar 31 2020 23:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36018 * 120.33807 * 2 1 4 4 C 1.40467 * 119.69285 * 180.02562 * 3 2 1 5 5 C 1.34954 * 120.30258 * 0.02562 * 4 3 2 6 6 N 1.36476 * 120.60801 * 0.02562 * 5 4 3 7 7 C 1.36837 * 132.56894 * 180.30300 * 6 5 4 8 8 C 1.35105 * 107.18015 * 180.10467 * 7 6 5 9 9 C 1.50700 * 125.68769 * 179.88092 * 8 7 6 10 10 C 1.50699 * 109.46995 * 124.71675 * 9 8 7 11 11 O 1.21275 * 120.00096 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99730 * 179.72155 * 10 9 8 13 13 C 1.46504 * 120.00160 * 180.27479 * 12 10 9 14 14 H 1.09005 * 115.51349 * 350.58578 * 13 12 10 15 15 C 1.52999 * 117.44333 * 205.17038 * 13 12 10 16 16 H 1.08996 * 119.53988 * 5.71458 * 15 13 12 17 17 C 1.54394 * 118.11949 * 160.80776 * 15 13 12 18 18 N 1.48150 * 104.61492 * 87.19066 * 17 15 13 19 19 C 1.36938 * 127.83627 * 140.41358 * 18 17 15 20 20 H 1.08004 * 120.00002 * 340.86880 * 19 18 17 21 21 C 1.38813 * 119.99960 * 160.86585 * 19 18 17 22 22 N 1.31616 * 119.99855 * 163.43476 * 21 19 18 23 23 Si 1.86792 * 119.99898 * 343.43784 * 21 19 18 24 24 H 1.48503 * 109.47402 * 85.38581 * 23 21 19 25 25 H 1.48509 * 109.46905 * 205.38303 * 23 21 19 26 26 H 1.48496 * 109.47571 * 325.38123 * 23 21 19 27 27 C 1.48147 * 104.32518 * 320.41326 * 18 17 15 28 28 C 1.52995 * 117.44463 * 136.00127 * 13 12 10 29 29 H 1.09010 * 119.54063 * 355.88204 * 28 13 12 30 30 N 1.33517 * 108.62555 * 359.61706 * 8 7 6 31 31 C 1.32560 * 109.15475 * 0.24155 * 30 8 7 32 32 H 1.09006 * 109.47019 * 269.93722 * 1 2 3 33 33 H 1.09002 * 109.46912 * 29.93958 * 1 2 3 34 34 H 1.09001 * 109.46994 * 149.93782 * 1 2 3 35 35 H 1.08001 * 120.14947 * 0.04135 * 3 2 1 36 36 H 1.08004 * 119.85007 * 180.02562 * 4 3 2 37 37 H 1.07998 * 119.69276 * 180.02562 * 5 4 3 38 38 H 1.08003 * 126.41432 * 359.96292 * 7 6 5 39 39 H 1.08996 * 109.47326 * 4.71666 * 9 8 7 40 40 H 1.09002 * 109.47088 * 244.71541 * 9 8 7 41 41 H 0.97006 * 120.00120 * 0.28042 * 12 10 9 42 42 H 1.09002 * 110.40568 * 205.97408 * 17 15 13 43 43 H 1.08993 * 110.40661 * 328.40776 * 17 15 13 44 44 H 0.96997 * 120.00446 * 180.02562 * 22 21 19 45 45 H 1.08994 * 110.40480 * 158.37160 * 27 18 17 46 46 H 1.08995 * 110.40628 * 280.68583 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1940 1.1739 0.0000 4 6 3.5986 1.1581 -0.0005 5 6 4.2664 -0.0146 -0.0016 6 7 3.5895 -1.1997 -0.0027 7 6 4.0054 -2.5033 0.0015 8 6 2.8971 -3.2759 -0.0046 9 6 2.8757 -4.7827 -0.0055 10 6 2.0535 -5.2742 1.1579 11 8 1.5362 -4.4791 1.9136 12 7 1.8889 -6.5971 1.3555 13 6 1.0846 -7.0749 2.4830 14 1 0.7876 -6.3132 3.2040 15 6 1.3855 -8.4754 3.0205 16 1 2.2340 -9.0325 2.6234 17 6 0.8993 -8.8291 4.4425 18 7 -0.4840 -9.3241 4.2523 19 6 -1.0965 -10.3708 4.8883 20 1 -0.5020 -11.1249 5.3825 21 6 -2.4816 -10.4625 4.8978 22 7 -3.0635 -11.6013 5.2088 23 14 -3.5194 -8.9697 4.4692 24 1 -3.6852 -8.8886 2.9957 25 1 -4.8528 -9.0930 5.1113 26 1 -2.8455 -7.7408 4.9598 27 6 -1.0543 -8.4299 3.2180 28 6 0.0986 -8.2133 2.2135 29 1 -0.0275 -8.5857 1.1968 30 7 1.8237 -2.4818 -0.0039 31 6 2.2189 -1.2164 -0.0027 32 1 -0.3633 -0.0011 1.0277 33 1 -0.3633 0.8905 -0.5129 34 1 -0.3633 -0.8894 -0.5148 35 1 1.6620 2.1138 0.0007 36 1 4.1467 2.0887 -0.0001 37 1 5.3464 -0.0153 -0.0016 38 1 5.0283 -2.8499 0.0063 39 1 3.8942 -5.1606 0.0840 40 1 2.4365 -5.1393 -0.9372 41 1 2.3030 -7.2331 0.7513 42 1 1.5259 -9.6089 4.8754 43 1 0.9019 -7.9425 5.0765 44 1 -4.0313 -11.6656 5.2151 45 1 -1.9017 -8.9085 2.7271 46 1 -1.3587 -7.4817 3.6612 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962061728.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:59 Heat of formation + Delta-G solvation = 96.548305 kcal Electronic energy + Delta-G solvation = -28045.307736 eV Core-core repulsion = 24130.300702 eV Total energy + Delta-G solvation = -3915.007034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.74082 -41.17304 -39.93621 -38.40941 -36.15827 -35.44501 -34.43658 -33.21562 -32.38992 -31.16648 -29.44897 -28.87081 -27.92890 -27.43373 -24.00140 -23.69528 -23.05008 -22.29370 -21.93199 -21.23945 -20.88463 -18.97966 -18.56751 -18.12034 -17.79915 -17.69220 -17.07948 -16.81358 -16.36051 -16.09763 -15.59309 -15.41756 -15.15352 -15.05316 -14.94036 -14.56805 -14.32247 -14.21305 -13.95340 -13.80444 -13.61046 -13.43972 -13.19471 -13.15963 -12.71868 -12.66372 -12.57183 -12.46944 -12.40033 -12.12075 -11.74671 -11.54884 -11.53313 -11.09765 -11.00071 -10.85071 -10.77557 -9.72811 -9.59522 -9.17869 -8.68584 -8.20605 -5.50488 -0.14549 0.36777 1.24337 1.34969 1.42421 1.63347 1.65842 1.80126 2.18220 2.35712 2.58648 2.77374 3.03669 3.22469 3.24002 3.48009 3.70375 3.75430 3.79655 3.93959 3.97513 4.01616 4.04964 4.25091 4.29099 4.33276 4.35916 4.43292 4.58446 4.65615 4.69811 4.71063 4.72737 4.80556 4.85163 4.93579 4.97187 5.09390 5.14966 5.18619 5.23702 5.37570 5.53103 5.55711 5.62344 5.70074 6.07217 6.20728 6.60980 6.63509 6.99338 7.34120 7.44872 8.09713 8.99286 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020312 B = 0.002114 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.180268 B =13238.811411 C =14204.237059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.081 4.081 3 C -0.101 4.101 4 C -0.136 4.136 5 C 0.035 3.965 6 N -0.368 5.368 7 C -0.089 4.089 8 C 0.041 3.959 9 C -0.047 4.047 10 C 0.515 3.485 11 O -0.574 6.574 12 N -0.684 5.684 13 C 0.121 3.879 14 H 0.103 0.897 15 C -0.154 4.154 16 H 0.148 0.852 17 C 0.148 3.852 18 N -0.626 5.626 19 C -0.223 4.223 20 H 0.070 0.930 21 C -0.038 4.038 22 N -0.958 5.958 23 Si 0.944 3.056 24 H -0.273 1.273 25 H -0.306 1.306 26 H -0.271 1.271 27 C 0.124 3.876 28 C -0.182 4.182 29 H 0.132 0.868 30 N -0.515 5.515 31 C 0.193 3.807 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.052 0.948 35 H 0.169 0.831 36 H 0.190 0.810 37 H 0.199 0.801 38 H 0.223 0.777 39 H 0.156 0.844 40 H 0.129 0.871 41 H 0.421 0.579 42 H 0.070 0.930 43 H 0.032 0.968 44 H 0.263 0.737 45 H 0.053 0.947 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.218 27.618 -18.387 39.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.084 4.084 3 C -0.124 4.124 4 C -0.156 4.156 5 C -0.085 4.085 6 N -0.039 5.039 7 C -0.220 4.220 8 C -0.092 4.092 9 C -0.087 4.087 10 C 0.303 3.697 11 O -0.451 6.451 12 N -0.336 5.336 13 C 0.013 3.987 14 H 0.121 0.879 15 C -0.174 4.174 16 H 0.166 0.834 17 C 0.023 3.977 18 N -0.351 5.351 19 C -0.351 4.351 20 H 0.088 0.912 21 C -0.232 4.232 22 N -0.605 5.605 23 Si 0.774 3.226 24 H -0.200 1.200 25 H -0.234 1.234 26 H -0.196 1.196 27 C -0.002 4.002 28 C -0.204 4.204 29 H 0.150 0.850 30 N -0.235 5.235 31 C -0.051 4.051 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.071 0.929 35 H 0.187 0.813 36 H 0.207 0.793 37 H 0.216 0.784 38 H 0.239 0.761 39 H 0.174 0.826 40 H 0.147 0.853 41 H 0.260 0.740 42 H 0.088 0.912 43 H 0.050 0.950 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 20.933 27.700 -17.759 38.999 hybrid contribution -0.389 -0.082 0.121 0.415 sum 20.545 27.618 -17.638 38.678 Atomic orbital electron populations 1.20612 0.89069 1.03452 1.02567 1.19351 0.97475 0.88959 1.02565 1.21377 0.94771 0.97789 0.98510 1.21325 0.94340 0.98475 1.01475 1.22367 1.00390 0.82504 1.03283 1.43019 1.08246 1.07169 1.45434 1.22909 1.01867 0.80297 1.16911 1.20604 0.88693 0.96165 1.03752 1.20089 1.03628 0.87794 0.97196 1.21139 0.80556 0.81527 0.86525 1.90747 1.49905 1.55826 1.48642 1.45133 1.51865 1.07177 1.29408 1.21323 0.95552 0.90421 0.91391 0.87895 1.24187 0.99379 0.97852 0.96004 0.83435 1.21332 0.85168 0.97286 0.93871 1.45675 1.11812 1.34447 1.43187 1.18626 0.89913 0.98322 1.28253 0.91208 1.25590 0.97515 0.99200 1.00904 1.69877 1.09985 1.25319 1.55332 0.85990 0.77626 0.81276 0.77720 1.19975 1.23414 1.19636 1.21623 0.95849 0.93027 0.89665 1.24159 0.91899 1.04389 0.99905 0.85001 1.70549 1.31294 0.99128 1.22509 1.21170 0.81679 0.94576 1.07642 0.91477 0.88229 0.92930 0.81311 0.79262 0.78442 0.76075 0.82632 0.85296 0.74039 0.91205 0.94978 0.92789 0.92861 0.95634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.91 10.03 71.24 0.71 -1.19 16 2 C -0.08 -1.67 5.90 -19.72 -0.12 -1.78 16 3 C -0.10 -1.23 9.72 22.30 0.22 -1.01 16 4 C -0.14 -1.10 9.98 22.06 0.22 -0.88 16 5 C 0.04 0.38 10.95 83.22 0.91 1.29 16 6 N -0.37 -7.08 2.94 -352.16 -1.04 -8.12 16 7 C -0.09 -1.55 11.63 83.19 0.97 -0.58 16 8 C 0.04 0.96 5.85 41.58 0.24 1.21 16 9 C -0.05 -0.76 6.26 29.10 0.18 -0.58 16 10 C 0.51 13.39 7.82 87.66 0.69 14.08 16 11 O -0.57 -21.98 15.12 -3.01 -0.05 -22.03 16 12 N -0.68 -15.10 5.56 -442.54 -2.46 -17.56 16 13 C 0.12 3.67 5.98 44.99 0.27 3.93 16 14 H 0.10 3.82 7.40 -2.38 -0.02 3.81 16 15 C -0.15 -4.65 7.05 -9.93 -0.07 -4.72 16 16 H 0.15 3.44 8.14 -2.39 -0.02 3.42 16 17 C 0.15 5.82 7.04 86.54 0.61 6.43 16 18 N -0.63 -31.13 3.19 -688.05 -2.20 -33.33 16 19 C -0.22 -13.14 10.78 84.03 0.91 -12.23 16 20 H 0.07 4.37 8.06 -2.91 -0.02 4.35 16 21 C -0.04 -2.31 5.48 84.86 0.47 -1.84 16 22 N -0.96 -61.76 13.97 21.65 0.30 -61.46 16 23 Si 0.94 49.60 24.49 68.60 1.68 51.28 16 24 H -0.27 -13.62 6.36 99.48 0.63 -12.99 16 25 H -0.31 -16.07 7.11 99.48 0.71 -15.36 16 26 H -0.27 -14.07 6.33 99.48 0.63 -13.44 16 27 C 0.12 5.58 4.50 86.55 0.39 5.97 16 28 C -0.18 -6.21 7.05 -9.92 -0.07 -6.28 16 29 H 0.13 3.92 8.14 -2.38 -0.02 3.90 16 30 N -0.51 -15.99 10.66 -182.40 -1.94 -17.94 16 31 C 0.19 5.06 7.52 134.11 1.01 6.06 16 32 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.10 1.20 8.09 -2.39 -0.02 1.18 16 34 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 35 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 36 H 0.19 -0.08 8.06 -2.91 -0.02 -0.10 16 37 H 0.20 0.43 8.06 -2.91 -0.02 0.41 16 38 H 0.22 1.64 8.06 -2.91 -0.02 1.62 16 39 H 0.16 0.98 8.10 -2.39 -0.02 0.96 16 40 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.42 5.63 8.83 -92.70 -0.82 4.82 16 42 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 45 H 0.05 2.58 5.06 -2.39 -0.01 2.57 16 46 H 0.03 1.22 6.79 -2.39 -0.02 1.20 16 Total: -1.00 -92.57 379.09 1.87 -90.70 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.04 Total: 10.58 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 7.53 Total: 7.87 kcal Atomic # 7 Polarization: -131.07 SS G_CDS: -7.34 Total: -138.40 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.05 Total: -22.03 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 1.68 Total: 51.28 kcal Total: -92.57 1.87 -90.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962061728.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.252 kcal (2) G-P(sol) polarization free energy of solvation -92.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds