Wall clock time and date at job start Tue Mar 31 2020 23:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.78206 * 2 1 4 4 C 1.54325 * 110.72125 * 123.24470 * 2 1 3 5 5 N 1.47018 * 107.40412 * 96.24436 * 4 2 1 6 6 C 1.36936 * 125.64999 * 178.82784 * 5 4 2 7 7 H 1.08004 * 119.99836 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00358 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99732 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00198 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46977 * 60.00100 * 10 8 6 12 12 H 1.48497 * 109.47073 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.46946 * 300.00062 * 10 8 6 14 14 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 15 15 C 1.54914 * 104.82992 * 24.12623 * 14 5 4 16 16 H 1.09001 * 111.00161 * 204.91727 * 15 14 5 17 17 N 1.46495 * 111.00061 * 81.10625 * 15 14 5 18 18 C 1.34783 * 120.00206 * 86.45660 * 17 15 14 19 19 O 1.21493 * 119.99705 * 359.97438 * 18 17 15 20 20 C 1.48352 * 120.00098 * 179.97438 * 18 17 15 21 21 C 1.40171 * 119.20056 * 179.73117 * 20 18 17 22 22 C 1.36620 * 119.70260 * 179.72093 * 21 20 18 23 23 C 1.40601 * 118.20854 * 0.52948 * 22 21 20 24 24 C 1.40739 * 121.37171 * 179.73393 * 23 22 21 25 25 C 1.36591 * 118.12811 * 179.97438 * 24 23 22 26 26 C 1.39427 * 119.84840 * 0.02562 * 25 24 23 27 27 N 1.31020 * 121.83830 * 0.02562 * 26 25 24 28 28 C 1.33860 * 121.42736 * 359.97438 * 27 26 25 29 29 N 1.31881 * 119.20267 * 359.97438 * 20 18 17 30 30 H 1.08999 * 109.47052 * 298.21250 * 1 2 3 31 31 H 1.08993 * 109.46847 * 58.21225 * 1 2 3 32 32 H 1.09005 * 109.46970 * 178.21340 * 1 2 3 33 33 H 1.08999 * 109.47083 * 181.78701 * 3 2 1 34 34 H 1.09002 * 109.47293 * 301.78710 * 3 2 1 35 35 H 1.09000 * 109.47062 * 61.78805 * 3 2 1 36 36 H 1.09002 * 109.88192 * 336.74876 * 4 2 1 37 37 H 1.09000 * 109.88128 * 215.73728 * 4 2 1 38 38 H 0.96996 * 119.99954 * 180.02562 * 9 8 6 39 39 H 1.08999 * 110.36956 * 142.96999 * 14 5 4 40 40 H 1.09001 * 110.36709 * 265.18192 * 14 5 4 41 41 H 0.96998 * 120.00258 * 266.44496 * 17 15 14 42 42 H 1.07997 * 120.14600 * 359.97438 * 21 20 18 43 43 H 1.07996 * 120.89754 * 180.24366 * 22 21 20 44 44 H 1.07993 * 120.93457 * 359.97438 * 24 23 22 45 45 H 1.07997 * 120.07021 * 180.02562 * 25 24 23 46 46 H 1.07999 * 119.07949 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0761 -0.7913 1.2072 5 7 2.3744 -2.1535 0.7415 6 6 2.8992 -3.1612 1.5058 7 1 3.1302 -2.9857 2.5462 8 6 3.1355 -4.4081 0.9433 9 7 2.8555 -4.6216 -0.3249 10 14 3.8521 -5.7825 1.9858 11 1 2.9402 -6.0687 3.1223 12 1 4.0065 -7.0042 1.1559 13 1 5.1788 -5.3674 2.5080 14 6 2.0157 -2.2547 -0.6849 15 6 2.0792 -0.8000 -1.2138 16 1 1.4396 -0.6738 -2.0874 17 7 3.4588 -0.4110 -1.5160 18 6 3.9880 -0.6880 -2.7243 19 8 3.3208 -1.2607 -3.5627 20 6 5.3849 -0.2935 -3.0304 21 6 5.9202 -0.5949 -4.2903 22 6 7.2036 -0.2312 -4.5852 23 6 7.9511 0.4304 -3.5951 24 6 9.2808 0.8299 -3.8254 25 6 9.9451 1.4687 -2.8172 26 6 9.3016 1.7057 -1.6033 27 7 8.0639 1.3313 -1.3924 28 6 7.3549 0.7010 -2.3368 29 7 6.0947 0.3280 -2.1088 30 1 -0.3633 0.4858 0.9056 31 1 -0.3633 0.5413 -0.8735 32 1 -0.3633 -1.0272 -0.0320 33 1 3.1621 1.4056 -0.0320 34 1 1.6957 1.9622 -0.8735 35 1 1.7476 1.9425 0.9056 36 1 1.3264 -0.8256 1.9977 37 1 2.9854 -0.3193 1.5792 38 1 3.0202 -5.4929 -0.7180 39 1 2.7337 -2.8821 -1.2130 40 1 1.0085 -2.6566 -0.7952 41 1 3.9916 0.0461 -0.8465 42 1 5.3193 -1.1086 -5.0261 43 1 7.6341 -0.4503 -5.5512 44 1 9.7623 0.6369 -4.7726 45 1 10.9664 1.7893 -2.9602 46 1 9.8385 2.2121 -0.8148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974600467.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:51 Heat of formation + Delta-G solvation = 70.483893 kcal Electronic energy + Delta-G solvation = -29751.707398 eV Core-core repulsion = 25835.570127 eV Total energy + Delta-G solvation = -3916.137271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.38263 -39.71742 -38.29938 -37.20360 -34.38300 -33.75598 -32.98343 -31.27921 -31.05605 -30.62696 -28.14924 -26.88475 -25.68601 -25.46541 -24.42219 -23.24661 -22.77484 -21.10987 -19.87772 -19.15849 -18.56359 -17.85563 -17.33994 -16.65581 -16.18993 -15.78916 -15.34654 -15.04170 -14.64590 -14.42643 -14.28431 -14.10812 -13.75179 -13.68756 -13.48840 -13.34076 -13.13840 -12.60463 -12.32473 -12.09566 -12.03761 -11.85730 -11.69657 -11.30340 -11.23397 -11.09176 -10.96105 -10.80447 -10.70770 -10.34614 -10.18168 -9.91464 -9.81115 -9.69411 -9.62239 -9.14726 -9.13179 -9.08773 -8.61724 -8.31637 -6.74041 -5.56460 -2.98634 -0.09359 0.33316 1.68484 2.32525 3.25790 3.37931 3.45059 3.48948 3.50476 3.65300 4.06308 4.17503 4.38279 4.44494 4.52919 4.54910 4.74345 4.88754 5.03873 5.08626 5.15240 5.31927 5.37179 5.44533 5.59150 5.62943 5.64192 5.69194 5.86231 5.91208 5.95623 5.97725 6.11026 6.15597 6.24118 6.36072 6.38181 6.46254 6.56086 6.67214 6.76645 6.82073 7.03058 7.15261 7.52706 7.68661 7.86946 7.94680 8.09025 8.45480 8.62158 9.28918 9.90518 10.54781 11.46429 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010034 B = 0.003761 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.864143 B = 7443.873153 C = 8478.674753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.086 4.086 3 C -0.133 4.133 4 C 0.142 3.858 5 N -0.600 5.600 6 C -0.222 4.222 7 H 0.076 0.924 8 C -0.009 4.009 9 N -0.918 5.918 10 Si 0.912 3.088 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.147 3.853 15 C 0.121 3.879 16 H 0.088 0.912 17 N -0.674 5.674 18 C 0.564 3.436 19 O -0.530 6.530 20 C 0.159 3.841 21 C -0.127 4.127 22 C -0.051 4.051 23 C -0.146 4.146 24 C -0.046 4.046 25 C -0.178 4.178 26 C 0.156 3.844 27 N -0.457 5.457 28 C 0.303 3.697 29 N -0.434 5.434 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.024 0.976 37 H 0.023 0.977 38 H 0.252 0.748 39 H 0.114 0.886 40 H 0.023 0.977 41 H 0.409 0.591 42 H 0.158 0.842 43 H 0.149 0.851 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.821 15.169 -8.948 20.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.087 4.087 3 C -0.191 4.191 4 C 0.016 3.984 5 N -0.326 5.326 6 C -0.351 4.351 7 H 0.094 0.906 8 C -0.205 4.205 9 N -0.567 5.567 10 Si 0.742 3.258 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.021 3.979 15 C 0.015 3.985 16 H 0.106 0.894 17 N -0.324 5.324 18 C 0.347 3.653 19 O -0.406 6.406 20 C 0.001 3.999 21 C -0.147 4.147 22 C -0.078 4.078 23 C -0.151 4.151 24 C -0.073 4.073 25 C -0.198 4.198 26 C -0.022 4.022 27 N -0.165 5.165 28 C 0.065 3.935 29 N -0.147 5.147 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.063 0.937 39 H 0.131 0.869 40 H 0.040 0.960 41 H 0.247 0.753 42 H 0.175 0.825 43 H 0.166 0.834 44 H 0.161 0.839 45 H 0.161 0.839 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 9.526 14.852 -7.884 19.326 hybrid contribution 1.542 -0.948 -0.604 1.908 sum 11.068 13.905 -8.487 19.695 Atomic orbital electron populations 1.21685 0.93463 1.02460 1.00921 1.21874 0.95993 0.94614 0.96249 1.21738 1.00810 0.95280 1.01272 1.21414 0.96581 0.86741 0.93620 1.44431 1.74075 1.06766 1.07342 1.18995 1.33944 0.89261 0.92857 0.90619 1.24769 1.01791 0.97603 0.96341 1.69785 1.53787 1.22250 1.10848 0.86198 0.78938 0.81615 0.79016 1.21243 1.21646 1.21310 1.22307 1.00220 0.90193 0.85162 1.22680 0.80806 0.98514 0.96463 0.89436 1.45738 1.14983 1.57497 1.14177 1.17710 0.84484 0.79903 0.83224 1.90779 1.60330 1.41684 1.47792 1.21692 0.94944 0.93123 0.90131 1.21896 0.96060 0.99280 0.97476 1.21437 0.93404 0.94278 0.98648 1.19729 0.96521 1.02130 0.96741 1.21478 0.92196 0.93965 0.99612 1.22028 1.01969 1.01040 0.94741 1.23129 0.89618 0.93428 0.96026 1.67644 1.07416 1.09985 1.31469 1.19227 0.90721 0.95433 0.88156 1.67432 1.05443 1.09567 1.32228 0.92622 0.93091 0.91730 0.92562 0.92868 0.92611 0.95805 0.95898 0.93726 0.86884 0.95953 0.75340 0.82454 0.83362 0.83937 0.83932 0.81558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.44 37.16 0.31 -1.67 16 2 C -0.09 -1.51 0.81 -152.54 -0.12 -1.63 16 3 C -0.13 -1.95 8.17 37.15 0.30 -1.64 16 4 C 0.14 3.01 6.40 -3.07 -0.02 2.99 16 5 N -0.60 -15.56 3.39 -170.07 -0.58 -16.13 16 6 C -0.22 -6.34 10.27 -15.06 -0.15 -6.49 16 7 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 8 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 9 N -0.92 -27.73 10.09 55.49 0.56 -27.17 16 10 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 C 0.15 3.70 5.27 -2.53 -0.01 3.69 16 15 C 0.12 2.43 2.57 -65.65 -0.17 2.26 16 16 H 0.09 1.73 7.63 -51.93 -0.40 1.33 16 17 N -0.67 -13.17 4.67 -52.38 -0.24 -13.41 16 18 C 0.56 11.06 7.81 -12.09 -0.09 10.96 16 19 O -0.53 -11.43 16.02 5.37 0.09 -11.35 16 20 C 0.16 2.70 6.75 -82.96 -0.56 2.14 16 21 C -0.13 -1.72 9.54 -39.44 -0.38 -2.09 16 22 C -0.05 -0.54 9.89 -39.28 -0.39 -0.93 16 23 C -0.15 -1.74 5.75 -106.68 -0.61 -2.35 16 24 C -0.05 -0.37 9.90 -39.23 -0.39 -0.76 16 25 C -0.18 -1.29 10.04 -39.73 -0.40 -1.69 16 26 C 0.16 1.49 11.14 -17.46 -0.19 1.29 16 27 N -0.46 -6.60 10.43 -12.60 -0.13 -6.74 16 28 C 0.30 4.68 7.62 -157.91 -1.20 3.48 16 29 N -0.43 -7.58 9.56 -9.19 -0.09 -7.67 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 1.12 7.46 -51.93 -0.39 0.73 16 33 H 0.06 0.85 6.21 -51.93 -0.32 0.53 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.02 0.50 7.84 -51.93 -0.41 0.10 16 37 H 0.02 0.49 7.82 -51.93 -0.41 0.08 16 38 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.11 3.31 5.87 -51.93 -0.30 3.01 16 40 H 0.02 0.60 7.73 -51.93 -0.40 0.20 16 41 H 0.41 7.85 6.12 -40.82 -0.25 7.60 16 42 H 0.16 1.96 7.60 -52.49 -0.40 1.56 16 43 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 46 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 376.12 15.07 5.67 5.67 Total: -1.00 -35.35 376.12 -10.13 -45.48 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.20 Total: 6.34 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -4.18 Total: 7.17 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -0.48 Total: -71.12 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.35 -10.13 -45.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974600467.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.963 kcal (2) G-P(sol) polarization free energy of solvation -35.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds