Wall clock time and date at job start Tue Mar 31 2020 23:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.78206 * 2 1 4 4 C 1.54325 * 110.72125 * 123.24470 * 2 1 3 5 5 N 1.47018 * 107.40412 * 96.24436 * 4 2 1 6 6 C 1.36936 * 125.64999 * 178.82784 * 5 4 2 7 7 H 1.08004 * 119.99836 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00358 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99732 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00198 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46977 * 60.00100 * 10 8 6 12 12 H 1.48497 * 109.47073 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.46946 * 300.00062 * 10 8 6 14 14 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 15 15 C 1.54914 * 104.82992 * 24.12623 * 14 5 4 16 16 H 1.09001 * 111.00161 * 204.91727 * 15 14 5 17 17 N 1.46495 * 111.00061 * 81.10625 * 15 14 5 18 18 C 1.34783 * 120.00206 * 86.45660 * 17 15 14 19 19 O 1.21493 * 119.99705 * 359.97438 * 18 17 15 20 20 C 1.48352 * 120.00098 * 179.97438 * 18 17 15 21 21 C 1.40171 * 119.20056 * 179.73117 * 20 18 17 22 22 C 1.36620 * 119.70260 * 179.72093 * 21 20 18 23 23 C 1.40601 * 118.20854 * 0.52948 * 22 21 20 24 24 C 1.40739 * 121.37171 * 179.73393 * 23 22 21 25 25 C 1.36591 * 118.12811 * 179.97438 * 24 23 22 26 26 C 1.39427 * 119.84840 * 0.02562 * 25 24 23 27 27 N 1.31020 * 121.83830 * 0.02562 * 26 25 24 28 28 C 1.33860 * 121.42736 * 359.97438 * 27 26 25 29 29 N 1.31881 * 119.20267 * 359.97438 * 20 18 17 30 30 H 1.08999 * 109.47052 * 298.21250 * 1 2 3 31 31 H 1.08993 * 109.46847 * 58.21225 * 1 2 3 32 32 H 1.09005 * 109.46970 * 178.21340 * 1 2 3 33 33 H 1.08999 * 109.47083 * 181.78701 * 3 2 1 34 34 H 1.09002 * 109.47293 * 301.78710 * 3 2 1 35 35 H 1.09000 * 109.47062 * 61.78805 * 3 2 1 36 36 H 1.09002 * 109.88192 * 336.74876 * 4 2 1 37 37 H 1.09000 * 109.88128 * 215.73728 * 4 2 1 38 38 H 0.96996 * 119.99954 * 180.02562 * 9 8 6 39 39 H 1.08999 * 110.36956 * 142.96999 * 14 5 4 40 40 H 1.09001 * 110.36709 * 265.18192 * 14 5 4 41 41 H 0.96998 * 120.00258 * 266.44496 * 17 15 14 42 42 H 1.07997 * 120.14600 * 359.97438 * 21 20 18 43 43 H 1.07996 * 120.89754 * 180.24366 * 22 21 20 44 44 H 1.07993 * 120.93457 * 359.97438 * 24 23 22 45 45 H 1.07997 * 120.07021 * 180.02562 * 25 24 23 46 46 H 1.07999 * 119.07949 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0761 -0.7913 1.2072 5 7 2.3744 -2.1535 0.7415 6 6 2.8992 -3.1612 1.5058 7 1 3.1302 -2.9857 2.5462 8 6 3.1355 -4.4081 0.9433 9 7 2.8555 -4.6216 -0.3249 10 14 3.8521 -5.7825 1.9858 11 1 2.9402 -6.0687 3.1223 12 1 4.0065 -7.0042 1.1559 13 1 5.1788 -5.3674 2.5080 14 6 2.0157 -2.2547 -0.6849 15 6 2.0792 -0.8000 -1.2138 16 1 1.4396 -0.6738 -2.0874 17 7 3.4588 -0.4110 -1.5160 18 6 3.9880 -0.6880 -2.7243 19 8 3.3208 -1.2607 -3.5627 20 6 5.3849 -0.2935 -3.0304 21 6 5.9202 -0.5949 -4.2903 22 6 7.2036 -0.2312 -4.5852 23 6 7.9511 0.4304 -3.5951 24 6 9.2808 0.8299 -3.8254 25 6 9.9451 1.4687 -2.8172 26 6 9.3016 1.7057 -1.6033 27 7 8.0639 1.3313 -1.3924 28 6 7.3549 0.7010 -2.3368 29 7 6.0947 0.3280 -2.1088 30 1 -0.3633 0.4858 0.9056 31 1 -0.3633 0.5413 -0.8735 32 1 -0.3633 -1.0272 -0.0320 33 1 3.1621 1.4056 -0.0320 34 1 1.6957 1.9622 -0.8735 35 1 1.7476 1.9425 0.9056 36 1 1.3264 -0.8256 1.9977 37 1 2.9854 -0.3193 1.5792 38 1 3.0202 -5.4929 -0.7180 39 1 2.7337 -2.8821 -1.2130 40 1 1.0085 -2.6566 -0.7952 41 1 3.9916 0.0461 -0.8465 42 1 5.3193 -1.1086 -5.0261 43 1 7.6341 -0.4503 -5.5512 44 1 9.7623 0.6369 -4.7726 45 1 10.9664 1.7893 -2.9602 46 1 9.8385 2.2121 -0.8148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974600467.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:50 Heat of formation + Delta-G solvation = 46.010994 kcal Electronic energy + Delta-G solvation = -29752.768623 eV Core-core repulsion = 25835.570127 eV Total energy + Delta-G solvation = -3917.198496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.34074 -41.19469 -39.69159 -38.40746 -35.75457 -35.24992 -34.48336 -32.63595 -32.16094 -32.01441 -29.87527 -28.14672 -27.48781 -26.72193 -25.42581 -24.84600 -23.64625 -22.68240 -21.58088 -20.50584 -19.70535 -19.11097 -18.72577 -18.19400 -17.42832 -17.20876 -16.71893 -16.40950 -15.91489 -15.76028 -15.64013 -15.35495 -15.29610 -15.11587 -14.69249 -14.51081 -14.14414 -13.98287 -13.77296 -13.68095 -13.23477 -13.10652 -13.03348 -12.89005 -12.84837 -12.63481 -12.59706 -12.18976 -12.14803 -11.92128 -11.80630 -11.76836 -11.48882 -11.40222 -11.16510 -10.77809 -10.14893 -10.10681 -9.99720 -9.87563 -8.86799 -7.77265 -5.22297 -0.99390 -0.54593 0.83897 1.30118 1.40432 1.44553 1.50786 1.96085 2.18703 2.46641 2.56886 3.06067 3.31338 3.37250 3.46805 3.52747 3.62470 3.66633 3.77923 3.93664 3.94013 4.03607 4.06597 4.25331 4.37281 4.46731 4.48317 4.65724 4.66139 4.79838 4.83082 4.84989 4.88915 4.94436 5.00263 5.08057 5.12737 5.17386 5.21691 5.25436 5.29263 5.44267 5.50300 5.59129 5.64744 5.80352 6.15054 6.29383 6.49681 7.00954 7.07722 7.13370 7.76896 8.40954 9.23238 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010034 B = 0.003761 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.864143 B = 7443.873153 C = 8478.674753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 C -0.125 4.125 4 C 0.138 3.862 5 N -0.618 5.618 6 C -0.237 4.237 7 H 0.081 0.919 8 C -0.067 4.067 9 N -0.947 5.947 10 Si 0.978 3.022 11 H -0.274 1.274 12 H -0.295 1.295 13 H -0.280 1.280 14 C 0.156 3.844 15 C 0.131 3.869 16 H 0.090 0.910 17 N -0.675 5.675 18 C 0.558 3.442 19 O -0.561 6.561 20 C 0.128 3.872 21 C -0.147 4.147 22 C -0.023 4.023 23 C -0.155 4.155 24 C -0.039 4.039 25 C -0.161 4.161 26 C 0.158 3.842 27 N -0.513 5.513 28 C 0.269 3.731 29 N -0.470 5.470 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.030 0.970 37 H 0.023 0.977 38 H 0.244 0.756 39 H 0.069 0.931 40 H -0.005 1.005 41 H 0.410 0.590 42 H 0.160 0.840 43 H 0.200 0.800 44 H 0.190 0.810 45 H 0.192 0.808 46 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.031 17.522 -9.599 24.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.074 4.074 3 C -0.182 4.182 4 C 0.013 3.987 5 N -0.344 5.344 6 C -0.366 4.366 7 H 0.099 0.901 8 C -0.260 4.260 9 N -0.597 5.597 10 Si 0.806 3.194 11 H -0.200 1.200 12 H -0.221 1.221 13 H -0.207 1.207 14 C 0.030 3.970 15 C 0.025 3.975 16 H 0.108 0.892 17 N -0.324 5.324 18 C 0.343 3.657 19 O -0.440 6.440 20 C -0.027 4.027 21 C -0.168 4.168 22 C -0.050 4.050 23 C -0.160 4.160 24 C -0.066 4.066 25 C -0.181 4.181 26 C -0.018 4.018 27 N -0.223 5.223 28 C 0.031 3.969 29 N -0.183 5.183 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.048 0.952 37 H 0.041 0.959 38 H 0.053 0.947 39 H 0.087 0.913 40 H 0.013 0.987 41 H 0.248 0.752 42 H 0.177 0.823 43 H 0.217 0.783 44 H 0.207 0.793 45 H 0.209 0.791 46 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 12.730 17.245 -8.512 23.063 hybrid contribution 0.785 -1.564 -0.361 1.787 sum 13.515 15.680 -8.873 22.522 Atomic orbital electron populations 1.21679 0.91597 1.01538 1.03312 1.21872 0.97354 0.95522 0.92616 1.21684 1.00099 0.93132 1.03325 1.21622 0.96813 0.84900 0.95344 1.44662 1.73926 1.08203 1.07608 1.19407 1.33563 0.90242 0.93433 0.90111 1.25632 1.02737 1.00083 0.97527 1.70100 1.55068 1.22049 1.12480 0.85157 0.78373 0.78302 0.77549 1.19976 1.22068 1.20662 1.21949 0.97149 0.92862 0.85089 1.22419 0.81720 0.95854 0.97496 0.89224 1.45715 1.14711 1.57528 1.14460 1.18290 0.85804 0.78903 0.82684 1.90728 1.61649 1.43020 1.48571 1.21318 0.93679 0.95754 0.91953 1.21969 0.97801 1.00752 0.96296 1.21967 0.91608 0.91323 1.00062 1.20062 0.98453 1.02019 0.95476 1.22036 0.90188 0.92575 1.01756 1.22562 1.03677 0.98847 0.92977 1.23915 0.88232 0.91582 0.98082 1.67610 1.09753 1.12284 1.32642 1.19530 0.90430 0.96756 0.90210 1.67201 1.07291 1.10655 1.33174 0.90234 0.90670 0.94325 0.93583 0.91116 0.90181 0.95162 0.95869 0.94661 0.91322 0.98737 0.75238 0.82258 0.78262 0.79270 0.79067 0.78437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.74 8.44 71.98 0.61 -3.14 16 2 C -0.07 -2.55 0.81 -50.91 -0.04 -2.59 16 3 C -0.12 -3.49 8.17 71.98 0.59 -2.90 16 4 C 0.14 5.95 6.40 86.73 0.56 6.50 16 5 N -0.62 -33.63 3.39 -691.97 -2.35 -35.98 16 6 C -0.24 -14.07 10.27 84.03 0.86 -13.21 16 7 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 8 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 9 N -0.95 -60.64 10.09 21.65 0.22 -60.42 16 10 Si 0.98 48.48 29.55 68.60 2.03 50.51 16 11 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 12 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 13 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 14 C 0.16 8.43 5.27 86.86 0.46 8.89 16 15 C 0.13 5.56 2.57 46.47 0.12 5.68 16 16 H 0.09 3.75 7.63 -2.39 -0.02 3.73 16 17 N -0.67 -28.19 4.67 -437.92 -2.04 -30.23 16 18 C 0.56 23.69 7.81 86.94 0.68 24.36 16 19 O -0.56 -26.22 16.02 -3.69 -0.06 -26.28 16 20 C 0.13 4.67 6.75 42.30 0.29 4.95 16 21 C -0.15 -4.10 9.54 22.36 0.21 -3.89 16 22 C -0.02 -0.45 9.89 22.47 0.22 -0.22 16 23 C -0.15 -3.34 5.75 -21.20 -0.12 -3.47 16 24 C -0.04 -0.44 9.90 22.50 0.22 -0.22 16 25 C -0.16 -1.50 10.04 22.17 0.22 -1.28 16 26 C 0.16 2.57 11.14 85.10 0.95 3.52 16 27 N -0.51 -14.66 10.43 -193.76 -2.02 -16.68 16 28 C 0.27 8.37 7.62 135.12 1.03 9.40 16 29 N -0.47 -17.39 9.56 -182.98 -1.75 -19.14 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.04 1.36 7.46 -2.38 -0.02 1.34 16 33 H 0.05 1.39 6.21 -2.39 -0.01 1.38 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.03 1.27 7.84 -2.39 -0.02 1.25 16 37 H 0.02 1.00 7.82 -2.39 -0.02 0.98 16 38 H 0.24 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.07 4.37 5.87 -2.39 -0.01 4.35 16 40 H -0.01 -0.30 7.73 -2.39 -0.02 -0.32 16 41 H 0.41 16.82 6.12 -92.71 -0.57 16.26 16 42 H 0.16 4.18 7.60 -2.91 -0.02 4.16 16 43 H 0.20 1.61 8.06 -2.91 -0.02 1.59 16 44 H 0.19 0.37 8.06 -2.91 -0.02 0.35 16 45 H 0.19 -0.03 8.06 -2.91 -0.02 -0.06 16 46 H 0.20 1.67 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -86.95 376.12 1.79 -85.17 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.45 Total: 24.26 kcal Atomic # 6 Polarization: 21.48 SS G_CDS: 7.32 Total: 28.80 kcal Atomic # 7 Polarization: -154.51 SS G_CDS: -7.94 Total: -162.45 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.06 Total: -26.28 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.03 Total: 50.51 kcal Total: -86.95 1.79 -85.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974600467.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.177 kcal (2) G-P(sol) polarization free energy of solvation -86.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds