Wall clock time and date at job start Tue Mar 31 2020 23:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 110.78335 * 2 1 4 4 C 1.54330 * 110.71673 * 123.23632 * 2 1 3 5 5 N 1.47026 * 107.26840 * 96.16971 * 4 2 1 6 6 C 1.36932 * 125.64483 * 178.97605 * 5 4 2 7 7 H 1.08001 * 120.00072 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00288 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99512 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00603 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46967 * 59.99522 * 10 8 6 12 12 H 1.48490 * 109.47539 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46744 * 300.00148 * 10 8 6 14 14 C 1.47420 * 108.70428 * 358.94103 * 5 4 2 15 15 C 1.54907 * 104.83524 * 24.12518 * 14 5 4 16 16 H 1.08994 * 111.00852 * 204.88001 * 15 14 5 17 17 N 1.46499 * 111.00010 * 81.06591 * 15 14 5 18 18 C 1.34776 * 120.00077 * 86.45742 * 17 15 14 19 19 O 1.21545 * 120.00155 * 359.97438 * 18 17 15 20 20 C 1.47900 * 120.00233 * 179.97438 * 18 17 15 21 21 N 1.32144 * 120.03164 * 359.97438 * 20 18 17 22 22 C 1.31971 * 122.76853 * 179.97438 * 21 20 18 23 23 C 1.37781 * 121.72920 * 0.02562 * 22 21 20 24 24 C 1.40384 * 118.72738 * 359.97438 * 23 22 21 25 25 C 1.40647 * 122.28099 * 180.02562 * 24 23 22 26 26 C 1.36644 * 117.95153 * 179.97438 * 25 24 23 27 27 C 1.39397 * 119.92405 * 0.02562 * 26 25 24 28 28 N 1.31198 * 121.85820 * 0.02562 * 27 26 25 29 29 C 1.33263 * 121.22100 * 359.68269 * 28 27 26 30 30 H 1.08998 * 109.47047 * 298.21692 * 1 2 3 31 31 H 1.09000 * 109.46907 * 58.21733 * 1 2 3 32 32 H 1.09001 * 109.47302 * 178.21808 * 1 2 3 33 33 H 1.08994 * 109.47458 * 181.78306 * 3 2 1 34 34 H 1.09010 * 109.46817 * 301.78688 * 3 2 1 35 35 H 1.09000 * 109.47214 * 61.77667 * 3 2 1 36 36 H 1.08998 * 109.88224 * 336.75291 * 4 2 1 37 37 H 1.08998 * 109.88221 * 215.58683 * 4 2 1 38 38 H 0.97003 * 120.00403 * 180.02562 * 9 8 6 39 39 H 1.08997 * 110.36858 * 142.96748 * 14 5 4 40 40 H 1.08997 * 110.36396 * 265.17736 * 14 5 4 41 41 H 0.97002 * 120.00181 * 266.44704 * 17 15 14 42 42 H 1.08001 * 119.13562 * 180.02562 * 22 21 20 43 43 H 1.08001 * 120.63781 * 180.02562 * 23 22 21 44 44 H 1.08001 * 121.02577 * 0.02562 * 25 24 23 45 45 H 1.08003 * 120.03901 * 179.97438 * 26 25 24 46 46 H 1.08007 * 119.07019 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0760 -0.7912 1.2074 5 7 2.3715 -2.1532 0.7391 6 6 2.8930 -3.1637 1.5020 7 1 3.1232 -2.9909 2.5429 8 6 3.1269 -4.4100 0.9371 9 7 2.8478 -4.6202 -0.3318 10 14 3.8390 -5.7883 1.9775 11 1 2.9252 -6.0746 3.1124 12 1 3.9925 -7.0083 1.1450 13 1 5.1661 -5.3774 2.5021 14 6 2.0126 -2.2510 -0.6874 15 6 2.0789 -0.7956 -1.2137 16 1 1.4401 -0.6665 -2.0874 17 7 3.4595 -0.4084 -1.5143 18 6 3.9888 -0.6842 -2.7228 19 8 3.3209 -1.2545 -3.5630 20 6 5.3824 -0.2928 -3.0265 21 7 6.1090 0.3277 -2.1137 22 6 7.3569 0.7006 -2.3265 23 6 7.9889 0.4645 -3.5278 24 6 7.2790 -0.1910 -4.5463 25 6 7.8509 -0.4703 -5.8005 26 6 7.0796 -1.1132 -6.7273 27 6 5.7689 -1.4699 -6.4142 28 7 5.2404 -1.2060 -5.2428 29 6 5.9404 -0.5866 -4.2929 30 1 -0.3633 0.4859 0.9055 31 1 -0.3633 0.5413 -0.8736 32 1 -0.3634 -1.0272 -0.0320 33 1 3.1621 1.4057 -0.0320 34 1 1.6957 1.9622 -0.8736 35 1 1.7475 1.9425 0.9055 36 1 1.3262 -0.8254 1.9978 37 1 2.9868 -0.3207 1.5777 38 1 3.0109 -5.4911 -0.7266 39 1 2.7292 -2.8788 -1.2167 40 1 1.0046 -2.6507 -0.7983 41 1 3.9926 0.0465 -0.8437 42 1 7.8969 1.2040 -1.5382 43 1 9.0110 0.7770 -3.6827 44 1 8.8686 -0.1861 -6.0240 45 1 7.4847 -1.3439 -7.7015 46 1 5.1714 -1.9773 -7.1573 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974682959.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:31 Heat of formation + Delta-G solvation = 72.970880 kcal Electronic energy + Delta-G solvation = -30049.133685 eV Core-core repulsion = 26133.104257 eV Total energy + Delta-G solvation = -3916.029428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.33380 -39.43626 -38.16480 -37.47941 -33.76921 -33.72032 -32.88887 -31.54576 -30.65096 -30.53153 -28.04477 -26.78558 -25.56006 -25.36103 -24.20020 -23.78335 -22.77955 -20.70425 -19.80551 -18.86610 -18.51911 -17.60495 -17.46895 -16.62418 -16.22958 -15.64993 -15.18430 -14.87461 -14.56107 -14.45494 -14.22330 -13.86929 -13.67208 -13.61055 -13.30388 -13.21762 -13.09975 -12.69815 -12.48223 -12.32530 -12.05889 -11.83018 -11.65052 -11.21263 -11.06441 -10.95487 -10.84933 -10.69777 -10.29489 -10.15204 -10.00399 -9.86605 -9.80443 -9.67437 -9.58956 -9.47646 -9.02000 -8.58248 -8.55560 -8.14952 -6.70848 -5.53203 -2.95939 -0.12563 0.57290 1.58411 2.72477 3.41854 3.45634 3.49474 3.51589 3.52458 4.08416 4.17463 4.21957 4.35019 4.49430 4.56581 4.61910 4.65550 4.97470 5.09437 5.20473 5.28507 5.35207 5.39329 5.43502 5.53316 5.61673 5.71405 5.73533 5.90390 5.90968 5.97817 6.12757 6.16076 6.21335 6.29026 6.39024 6.43933 6.51471 6.58716 6.71917 6.79761 6.90248 7.12454 7.55818 7.62426 7.71211 7.85095 7.99750 8.23477 8.50308 8.85730 9.31580 9.93404 10.58063 11.49141 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010399 B = 0.003986 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.874114 B = 7022.463762 C = 8154.986217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.132 4.132 4 C 0.143 3.857 5 N -0.600 5.600 6 C -0.224 4.224 7 H 0.075 0.925 8 C -0.009 4.009 9 N -0.916 5.916 10 Si 0.911 3.089 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.287 1.287 14 C 0.147 3.853 15 C 0.125 3.875 16 H 0.086 0.914 17 N -0.683 5.683 18 C 0.561 3.439 19 O -0.496 6.496 20 C 0.157 3.843 21 N -0.445 5.445 22 C 0.078 3.922 23 C -0.133 4.133 24 C -0.083 4.083 25 C -0.068 4.068 26 C -0.156 4.156 27 C 0.127 3.873 28 N -0.413 5.413 29 C 0.105 3.895 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.023 0.977 37 H 0.022 0.978 38 H 0.252 0.748 39 H 0.113 0.887 40 H 0.021 0.979 41 H 0.404 0.596 42 H 0.165 0.835 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.378 14.036 -10.499 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.088 4.088 3 C -0.190 4.190 4 C 0.017 3.983 5 N -0.326 5.326 6 C -0.352 4.352 7 H 0.093 0.907 8 C -0.205 4.205 9 N -0.564 5.564 10 Si 0.742 3.258 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.021 3.979 15 C 0.019 3.981 16 H 0.104 0.896 17 N -0.335 5.335 18 C 0.343 3.657 19 O -0.369 6.369 20 C 0.004 3.996 21 N -0.158 5.158 22 C -0.068 4.068 23 C -0.153 4.153 24 C -0.091 4.091 25 C -0.094 4.094 26 C -0.177 4.177 27 C -0.047 4.047 28 N -0.120 5.120 29 C -0.020 4.020 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.041 0.959 37 H 0.040 0.960 38 H 0.063 0.937 39 H 0.131 0.869 40 H 0.039 0.961 41 H 0.241 0.759 42 H 0.182 0.818 43 H 0.162 0.838 44 H 0.161 0.839 45 H 0.159 0.841 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.756 13.403 -9.961 18.412 hybrid contribution 2.120 -0.546 -0.045 2.189 sum 9.875 12.857 -10.007 19.051 Atomic orbital electron populations 1.21684 0.93555 1.02445 1.00841 1.21831 0.95947 0.94605 0.96392 1.21730 1.00720 0.95368 1.01166 1.21406 0.96450 0.86793 0.93606 1.44439 1.74185 1.06641 1.07364 1.18977 1.34204 0.89226 0.92791 0.90673 1.24778 1.01823 0.97604 0.96294 1.69802 1.53640 1.22280 1.10710 0.86212 0.78886 0.81738 0.78995 1.21262 1.21683 1.21345 1.22301 1.00090 0.90477 0.85033 1.22531 0.81055 0.98256 0.96230 0.89624 1.45678 1.14740 1.58892 1.14187 1.17448 0.84435 0.80571 0.83224 1.90849 1.59544 1.39508 1.46982 1.21766 0.95425 0.94212 0.88228 1.67403 1.07546 1.08540 1.32269 1.22589 0.90359 0.97449 0.96370 1.22322 1.00859 0.98542 0.93624 1.18969 0.94748 0.99416 0.95928 1.21378 1.00107 0.96321 0.91566 1.22114 0.95793 0.98925 1.00861 1.23339 0.92749 0.94740 0.93888 1.68338 1.35296 1.08383 1.00029 1.19505 0.90517 0.97231 0.94725 0.92705 0.93115 0.91754 0.92626 0.92893 0.92754 0.95896 0.96013 0.93721 0.86901 0.96132 0.75913 0.81808 0.83841 0.83919 0.84074 0.81823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 8.44 37.16 0.31 -1.70 16 2 C -0.09 -1.52 0.81 -152.67 -0.12 -1.65 16 3 C -0.13 -1.90 8.16 37.15 0.30 -1.59 16 4 C 0.14 3.01 6.41 -3.06 -0.02 2.99 16 5 N -0.60 -15.61 3.39 -170.08 -0.58 -16.19 16 6 C -0.22 -6.38 10.27 -15.06 -0.15 -6.53 16 7 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 8 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 9 N -0.92 -28.06 10.09 55.49 0.56 -27.50 16 10 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 C 0.15 3.76 5.26 -2.53 -0.01 3.75 16 15 C 0.12 2.56 2.56 -65.78 -0.17 2.39 16 16 H 0.09 1.77 7.63 -51.93 -0.40 1.37 16 17 N -0.68 -13.57 4.66 -52.66 -0.25 -13.81 16 18 C 0.56 11.74 7.81 -12.30 -0.10 11.65 16 19 O -0.50 -11.73 14.96 5.33 0.08 -11.65 16 20 C 0.16 2.85 6.81 -82.55 -0.56 2.29 16 21 N -0.44 -7.01 9.48 -9.55 -0.09 -7.10 16 22 C 0.08 0.92 11.12 -17.66 -0.20 0.72 16 23 C -0.13 -1.35 9.93 -38.94 -0.39 -1.74 16 24 C -0.08 -1.05 5.75 -106.79 -0.61 -1.66 16 25 C -0.07 -0.62 9.94 -39.25 -0.39 -1.01 16 26 C -0.16 -1.38 10.03 -39.73 -0.40 -1.78 16 27 C 0.13 1.54 11.14 -17.39 -0.19 1.34 16 28 N -0.41 -7.07 8.49 -10.75 -0.09 -7.16 16 29 C 0.11 1.75 6.61 -84.62 -0.56 1.19 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 1.14 7.45 -51.93 -0.39 0.75 16 33 H 0.05 0.80 6.21 -51.93 -0.32 0.48 16 34 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.02 0.48 7.84 -51.93 -0.41 0.08 16 37 H 0.02 0.45 7.82 -51.93 -0.41 0.05 16 38 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.11 3.39 5.87 -51.93 -0.30 3.08 16 40 H 0.02 0.57 7.72 -51.93 -0.40 0.16 16 41 H 0.40 7.57 6.16 -40.82 -0.25 7.31 16 42 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 46 H 0.16 1.50 8.06 -52.48 -0.42 1.08 16 LS Contribution 374.20 15.07 5.64 5.64 Total: -1.00 -36.12 374.20 -9.33 -45.45 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.23 Total: 6.16 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: -3.36 Total: 8.31 kcal Atomic # 7 Polarization: -71.31 SS G_CDS: -0.45 Total: -71.76 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.08 Total: -11.65 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.12 -9.33 -45.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974682959.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.424 kcal (2) G-P(sol) polarization free energy of solvation -36.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds