Wall clock time and date at job start Tue Mar 31 2020 23:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 110.78335 * 2 1 4 4 C 1.54330 * 110.71673 * 123.23632 * 2 1 3 5 5 N 1.47026 * 107.26840 * 96.16971 * 4 2 1 6 6 C 1.36932 * 125.64483 * 178.97605 * 5 4 2 7 7 H 1.08001 * 120.00072 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00288 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99512 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00603 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46967 * 59.99522 * 10 8 6 12 12 H 1.48490 * 109.47539 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46744 * 300.00148 * 10 8 6 14 14 C 1.47420 * 108.70428 * 358.94103 * 5 4 2 15 15 C 1.54907 * 104.83524 * 24.12518 * 14 5 4 16 16 H 1.08994 * 111.00852 * 204.88001 * 15 14 5 17 17 N 1.46499 * 111.00010 * 81.06591 * 15 14 5 18 18 C 1.34776 * 120.00077 * 86.45742 * 17 15 14 19 19 O 1.21545 * 120.00155 * 359.97438 * 18 17 15 20 20 C 1.47900 * 120.00233 * 179.97438 * 18 17 15 21 21 N 1.32144 * 120.03164 * 359.97438 * 20 18 17 22 22 C 1.31971 * 122.76853 * 179.97438 * 21 20 18 23 23 C 1.37781 * 121.72920 * 0.02562 * 22 21 20 24 24 C 1.40384 * 118.72738 * 359.97438 * 23 22 21 25 25 C 1.40647 * 122.28099 * 180.02562 * 24 23 22 26 26 C 1.36644 * 117.95153 * 179.97438 * 25 24 23 27 27 C 1.39397 * 119.92405 * 0.02562 * 26 25 24 28 28 N 1.31198 * 121.85820 * 0.02562 * 27 26 25 29 29 C 1.33263 * 121.22100 * 359.68269 * 28 27 26 30 30 H 1.08998 * 109.47047 * 298.21692 * 1 2 3 31 31 H 1.09000 * 109.46907 * 58.21733 * 1 2 3 32 32 H 1.09001 * 109.47302 * 178.21808 * 1 2 3 33 33 H 1.08994 * 109.47458 * 181.78306 * 3 2 1 34 34 H 1.09010 * 109.46817 * 301.78688 * 3 2 1 35 35 H 1.09000 * 109.47214 * 61.77667 * 3 2 1 36 36 H 1.08998 * 109.88224 * 336.75291 * 4 2 1 37 37 H 1.08998 * 109.88221 * 215.58683 * 4 2 1 38 38 H 0.97003 * 120.00403 * 180.02562 * 9 8 6 39 39 H 1.08997 * 110.36858 * 142.96748 * 14 5 4 40 40 H 1.08997 * 110.36396 * 265.17736 * 14 5 4 41 41 H 0.97002 * 120.00181 * 266.44704 * 17 15 14 42 42 H 1.08001 * 119.13562 * 180.02562 * 22 21 20 43 43 H 1.08001 * 120.63781 * 180.02562 * 23 22 21 44 44 H 1.08001 * 121.02577 * 0.02562 * 25 24 23 45 45 H 1.08003 * 120.03901 * 179.97438 * 26 25 24 46 46 H 1.08007 * 119.07019 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0760 -0.7912 1.2074 5 7 2.3715 -2.1532 0.7391 6 6 2.8930 -3.1637 1.5020 7 1 3.1232 -2.9909 2.5429 8 6 3.1269 -4.4100 0.9371 9 7 2.8478 -4.6202 -0.3318 10 14 3.8390 -5.7883 1.9775 11 1 2.9252 -6.0746 3.1124 12 1 3.9925 -7.0083 1.1450 13 1 5.1661 -5.3774 2.5021 14 6 2.0126 -2.2510 -0.6874 15 6 2.0789 -0.7956 -1.2137 16 1 1.4401 -0.6665 -2.0874 17 7 3.4595 -0.4084 -1.5143 18 6 3.9888 -0.6842 -2.7228 19 8 3.3209 -1.2545 -3.5630 20 6 5.3824 -0.2928 -3.0265 21 7 6.1090 0.3277 -2.1137 22 6 7.3569 0.7006 -2.3265 23 6 7.9889 0.4645 -3.5278 24 6 7.2790 -0.1910 -4.5463 25 6 7.8509 -0.4703 -5.8005 26 6 7.0796 -1.1132 -6.7273 27 6 5.7689 -1.4699 -6.4142 28 7 5.2404 -1.2060 -5.2428 29 6 5.9404 -0.5866 -4.2929 30 1 -0.3633 0.4859 0.9055 31 1 -0.3633 0.5413 -0.8736 32 1 -0.3634 -1.0272 -0.0320 33 1 3.1621 1.4057 -0.0320 34 1 1.6957 1.9622 -0.8736 35 1 1.7475 1.9425 0.9055 36 1 1.3262 -0.8254 1.9978 37 1 2.9868 -0.3207 1.5777 38 1 3.0109 -5.4911 -0.7266 39 1 2.7292 -2.8788 -1.2167 40 1 1.0046 -2.6507 -0.7983 41 1 3.9926 0.0465 -0.8437 42 1 7.8969 1.2040 -1.5382 43 1 9.0110 0.7770 -3.6827 44 1 8.8686 -0.1861 -6.0240 45 1 7.4847 -1.3439 -7.7015 46 1 5.1714 -1.9773 -7.1573 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974682959.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:30 Heat of formation + Delta-G solvation = 46.852431 kcal Electronic energy + Delta-G solvation = -30050.266266 eV Core-core repulsion = 26133.104257 eV Total energy + Delta-G solvation = -3917.162008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.32899 -40.99507 -39.38814 -38.84971 -35.67454 -34.75079 -34.41904 -32.61614 -32.47266 -31.59423 -29.78519 -28.08411 -27.44409 -26.49593 -25.28852 -25.05916 -24.15702 -22.34664 -21.41762 -20.29962 -19.65065 -18.71909 -18.69215 -18.50320 -17.37492 -17.18394 -16.66691 -16.30420 -15.76277 -15.73009 -15.51191 -15.32480 -15.17066 -15.10264 -14.65967 -14.37017 -14.05788 -13.99476 -13.76978 -13.65126 -13.63122 -13.11891 -13.07028 -13.01553 -12.85154 -12.61683 -12.57232 -12.17984 -11.81720 -11.78214 -11.75511 -11.43846 -11.36748 -11.25888 -10.94204 -10.76644 -10.36728 -10.14741 -9.93556 -9.44812 -8.84923 -7.75223 -5.20973 -1.08809 -0.31959 0.67390 1.40748 1.45321 1.51746 1.68946 2.08626 2.26268 2.47907 3.05742 3.10579 3.24756 3.33438 3.45318 3.56831 3.66558 3.69226 3.74927 3.94815 3.97469 4.07248 4.24188 4.30568 4.41058 4.48604 4.52135 4.58354 4.65381 4.74453 4.83634 4.87409 4.91632 4.95137 5.03255 5.09936 5.11160 5.19997 5.30551 5.32091 5.35890 5.46931 5.53323 5.63816 5.71021 5.83771 6.31125 6.50035 6.71596 6.98219 7.08253 7.32220 7.78854 8.43377 9.25017 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010399 B = 0.003986 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.874114 B = 7022.463762 C = 8154.986217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 C -0.124 4.124 4 C 0.139 3.861 5 N -0.618 5.618 6 C -0.235 4.235 7 H 0.085 0.915 8 C -0.071 4.071 9 N -0.950 5.950 10 Si 0.979 3.021 11 H -0.273 1.273 12 H -0.299 1.299 13 H -0.276 1.276 14 C 0.157 3.843 15 C 0.135 3.865 16 H 0.079 0.921 17 N -0.679 5.679 18 C 0.554 3.446 19 O -0.542 6.542 20 C 0.098 3.902 21 N -0.454 5.454 22 C 0.054 3.946 23 C -0.090 4.090 24 C -0.105 4.105 25 C -0.049 4.049 26 C -0.152 4.152 27 C 0.124 3.876 28 N -0.488 5.488 29 C 0.082 3.918 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.030 0.970 37 H 0.031 0.969 38 H 0.241 0.759 39 H 0.065 0.935 40 H -0.012 1.012 41 H 0.409 0.591 42 H 0.203 0.797 43 H 0.201 0.799 44 H 0.196 0.804 45 H 0.188 0.812 46 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.011 16.708 -10.647 23.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.074 4.074 3 C -0.181 4.181 4 C 0.014 3.986 5 N -0.344 5.344 6 C -0.364 4.364 7 H 0.103 0.897 8 C -0.263 4.263 9 N -0.600 5.600 10 Si 0.807 3.193 11 H -0.199 1.199 12 H -0.225 1.225 13 H -0.202 1.202 14 C 0.031 3.969 15 C 0.029 3.971 16 H 0.097 0.903 17 N -0.331 5.331 18 C 0.339 3.661 19 O -0.417 6.417 20 C -0.052 4.052 21 N -0.167 5.167 22 C -0.094 4.094 23 C -0.110 4.110 24 C -0.113 4.113 25 C -0.075 4.075 26 C -0.173 4.173 27 C -0.049 4.049 28 N -0.197 5.197 29 C -0.042 4.042 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.006 0.994 41 H 0.247 0.753 42 H 0.219 0.781 43 H 0.218 0.782 44 H 0.213 0.787 45 H 0.206 0.794 46 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 11.378 16.122 -10.071 22.154 hybrid contribution 1.141 -1.349 -0.115 1.771 sum 12.519 14.772 -10.186 21.879 Atomic orbital electron populations 1.21683 0.91994 1.01318 1.03211 1.21831 0.97115 0.95827 0.92615 1.21682 1.00461 0.92805 1.03190 1.21637 0.97044 0.84743 0.95143 1.44672 1.74011 1.08264 1.07409 1.19437 1.33408 0.90062 0.93459 0.89700 1.25681 1.02914 1.00292 0.97423 1.70151 1.55276 1.21957 1.12609 0.85136 0.78560 0.78159 0.77417 1.19913 1.22530 1.20199 1.21896 0.96659 0.93093 0.85252 1.22229 0.82058 0.95708 0.97113 0.90315 1.45598 1.14347 1.58808 1.14326 1.18100 0.85926 0.79423 0.82702 1.90785 1.61249 1.41488 1.48209 1.21228 0.94499 0.99068 0.90434 1.67252 1.09376 1.07930 1.32154 1.23310 0.89266 0.98243 0.98557 1.22970 1.02399 0.94090 0.91539 1.19394 0.93336 1.00165 0.98376 1.22003 1.01929 0.94085 0.89465 1.22530 0.94011 0.97879 1.02867 1.23910 0.94805 0.93454 0.92725 1.68241 1.37826 1.11495 1.02126 1.19659 0.92562 0.97875 0.94129 0.90038 0.91013 0.94645 0.92921 0.91529 0.90025 0.95175 0.95134 0.94905 0.91726 0.99411 0.75297 0.78084 0.78237 0.78714 0.79440 0.80320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.87 8.44 71.98 0.61 -3.26 16 2 C -0.07 -2.57 0.81 -50.99 -0.04 -2.61 16 3 C -0.12 -3.33 8.16 71.98 0.59 -2.74 16 4 C 0.14 5.88 6.41 86.73 0.56 6.44 16 5 N -0.62 -33.64 3.39 -692.00 -2.35 -35.99 16 6 C -0.23 -13.84 10.27 84.03 0.86 -12.98 16 7 H 0.09 4.72 7.83 -2.91 -0.02 4.69 16 8 C -0.07 -4.31 5.49 84.86 0.47 -3.84 16 9 N -0.95 -62.29 10.09 21.65 0.22 -62.07 16 10 Si 0.98 48.59 29.55 68.60 2.03 50.62 16 11 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 13 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 14 C 0.16 8.77 5.26 86.86 0.46 9.22 16 15 C 0.13 5.94 2.56 46.38 0.12 6.05 16 16 H 0.08 3.54 7.63 -2.39 -0.02 3.52 16 17 N -0.68 -28.91 4.66 -438.79 -2.05 -30.96 16 18 C 0.55 25.40 7.81 86.80 0.68 26.08 16 19 O -0.54 -28.51 14.96 -3.86 -0.06 -28.56 16 20 C 0.10 3.81 6.81 42.45 0.29 4.10 16 21 N -0.45 -14.53 9.48 -184.13 -1.75 -16.27 16 22 C 0.05 1.13 11.12 84.56 0.94 2.07 16 23 C -0.09 -1.45 9.93 22.68 0.23 -1.23 16 24 C -0.11 -2.38 5.75 -21.27 -0.12 -2.51 16 25 C -0.05 -0.68 9.94 22.48 0.22 -0.46 16 26 C -0.15 -2.19 10.03 22.18 0.22 -1.97 16 27 C 0.12 3.02 11.14 85.07 0.95 3.97 16 28 N -0.49 -17.84 8.49 -187.92 -1.60 -19.44 16 29 C 0.08 2.83 6.61 40.62 0.27 3.10 16 30 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.03 1.29 7.45 -2.39 -0.02 1.27 16 33 H 0.05 1.46 6.21 -2.39 -0.01 1.44 16 34 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.03 1.25 7.84 -2.39 -0.02 1.23 16 37 H 0.03 1.25 7.82 -2.39 -0.02 1.23 16 38 H 0.24 15.59 8.31 -92.71 -0.77 14.82 16 39 H 0.06 4.27 5.87 -2.39 -0.01 4.25 16 40 H -0.01 -0.72 7.72 -2.39 -0.02 -0.73 16 41 H 0.41 16.10 6.16 -92.71 -0.57 15.53 16 42 H 0.20 2.51 8.06 -2.91 -0.02 2.49 16 43 H 0.20 0.94 8.06 -2.91 -0.02 0.92 16 44 H 0.20 0.64 8.06 -2.91 -0.02 0.62 16 45 H 0.19 0.91 8.06 -2.91 -0.02 0.89 16 46 H 0.18 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -91.45 374.20 2.18 -89.28 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.44 Total: 23.96 kcal Atomic # 6 Polarization: 22.15 SS G_CDS: 7.29 Total: 29.44 kcal Atomic # 7 Polarization: -157.21 SS G_CDS: -7.52 Total: -164.73 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.06 Total: -28.56 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.62 kcal Total: -91.45 2.18 -89.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974682959.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.128 kcal (2) G-P(sol) polarization free energy of solvation -91.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds