Wall clock time and date at job start Tue Mar 31 2020 23:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 110.78075 * 2 1 4 4 C 1.54319 * 110.72418 * 123.23630 * 2 1 3 5 5 N 1.47027 * 107.27180 * 96.17122 * 4 2 1 6 6 C 1.36932 * 125.64936 * 178.97736 * 5 4 2 7 7 H 1.08005 * 119.99976 * 349.94493 * 6 5 4 8 8 C 1.38816 * 119.99894 * 169.94433 * 6 5 4 9 9 N 1.31614 * 119.99975 * 350.42072 * 8 6 5 10 10 Si 1.86802 * 119.99657 * 170.42264 * 8 6 5 11 11 H 1.48496 * 109.47006 * 94.14331 * 10 8 6 12 12 H 1.48500 * 109.46736 * 214.13984 * 10 8 6 13 13 H 1.48494 * 109.47475 * 334.13794 * 10 8 6 14 14 C 1.47426 * 108.70098 * 358.94276 * 5 4 2 15 15 C 1.54908 * 104.83177 * 24.12894 * 14 5 4 16 16 H 1.09004 * 111.00237 * 204.87878 * 15 14 5 17 17 N 1.46502 * 111.00691 * 81.06153 * 15 14 5 18 18 C 1.34775 * 119.99597 * 86.45055 * 17 15 14 19 19 O 1.21506 * 120.00356 * 0.02562 * 18 17 15 20 20 C 1.48284 * 119.99870 * 180.02562 * 18 17 15 21 21 C 1.40371 * 119.18712 * 179.72879 * 20 18 17 22 22 C 1.36557 * 119.82493 * 179.75888 * 21 20 18 23 23 C 1.40552 * 118.05830 * 0.50101 * 22 21 20 24 24 C 1.40522 * 122.21620 * 179.76799 * 23 22 21 25 25 C 1.36255 * 118.68811 * 179.97438 * 24 23 22 26 26 N 1.32589 * 121.80381 * 0.02991 * 25 24 23 27 27 C 1.31121 * 122.87110 * 359.94859 * 26 25 24 28 28 C 1.40859 * 119.95865 * 0.04470 * 27 26 25 29 29 N 1.31886 * 119.19122 * 359.97438 * 20 18 17 30 30 H 1.09003 * 109.46885 * 298.21210 * 1 2 3 31 31 H 1.08995 * 109.47521 * 58.21298 * 1 2 3 32 32 H 1.09000 * 109.47016 * 178.21677 * 1 2 3 33 33 H 1.08999 * 109.47383 * 181.78587 * 3 2 1 34 34 H 1.09001 * 109.46474 * 301.78804 * 3 2 1 35 35 H 1.09006 * 109.46903 * 61.78203 * 3 2 1 36 36 H 1.09006 * 109.88014 * 336.75529 * 4 2 1 37 37 H 1.09001 * 109.88668 * 215.59287 * 4 2 1 38 38 H 0.96998 * 120.00188 * 180.02562 * 9 8 6 39 39 H 1.09001 * 110.36669 * 142.96708 * 14 5 4 40 40 H 1.08999 * 110.36708 * 265.18354 * 14 5 4 41 41 H 0.96994 * 120.00509 * 266.45405 * 17 15 14 42 42 H 1.08000 * 120.09059 * 0.02914 * 21 20 18 43 43 H 1.08000 * 120.96955 * 180.25240 * 22 21 20 44 44 H 1.08006 * 120.65676 * 359.97438 * 24 23 22 45 45 H 1.07998 * 119.09811 * 179.97438 * 25 24 23 46 46 H 1.08006 * 120.01811 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4306 0.0000 4 6 2.0760 -0.7911 1.2072 5 7 2.3717 -2.1531 0.7390 6 6 2.8934 -3.1636 1.5018 7 1 3.2738 -2.9527 2.4904 8 6 2.9332 -4.4590 1.0044 9 7 2.3046 -4.7542 -0.1136 10 14 3.8791 -5.7830 1.9219 11 1 2.9550 -6.5167 2.8235 12 1 4.4757 -6.7308 0.9468 13 1 4.9585 -5.1540 2.7247 14 6 2.0127 -2.2509 -0.6875 15 6 2.0790 -0.7954 -1.2138 16 1 1.4401 -0.6664 -2.0875 17 7 3.4595 -0.4081 -1.5144 18 6 3.9887 -0.6838 -2.7228 19 8 3.3208 -1.2533 -3.5631 20 6 5.3862 -0.2923 -3.0270 21 6 5.9222 -0.5930 -4.2891 22 6 7.2061 -0.2341 -4.5848 23 6 7.9539 0.4234 -3.5928 24 6 9.2836 0.8273 -3.8015 25 6 9.9413 1.4601 -2.7898 26 7 9.3611 1.7013 -1.6223 27 6 8.1249 1.3540 -1.3567 28 6 7.3544 0.6937 -2.3337 29 7 6.0967 0.3255 -2.1035 30 1 -0.3633 0.4858 0.9056 31 1 -0.3634 0.5413 -0.8735 32 1 -0.3633 -1.0272 -0.0320 33 1 3.1621 1.4059 -0.0320 34 1 1.6955 1.9622 -0.8736 35 1 1.7474 1.9426 0.9056 36 1 1.3263 -0.8254 1.9977 37 1 2.9868 -0.3205 1.5776 38 1 2.3321 -5.6595 -0.4610 39 1 2.7294 -2.8787 -1.2169 40 1 1.0047 -2.6506 -0.7985 41 1 3.9926 0.0468 -0.8439 42 1 5.3193 -1.1031 -5.0258 43 1 7.6357 -0.4526 -5.5513 44 1 9.7745 0.6398 -4.7451 45 1 10.9636 1.7730 -2.9429 46 1 7.6978 1.5739 -0.3894 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974817916.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:57 Heat of formation + Delta-G solvation = 61.273613 kcal Electronic energy + Delta-G solvation = -29698.126175 eV Core-core repulsion = 25781.589516 eV Total energy + Delta-G solvation = -3916.536659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.47677 -39.81871 -38.46388 -37.43024 -34.24296 -33.75183 -32.99206 -31.73863 -30.76778 -30.65236 -28.20101 -26.92600 -25.71529 -25.54230 -24.55517 -23.28846 -22.91393 -21.18602 -19.98060 -19.12280 -18.43660 -17.88977 -17.63441 -16.65569 -16.24075 -15.77300 -15.31657 -15.10109 -14.78172 -14.63848 -14.35315 -14.17496 -13.84199 -13.75024 -13.54777 -13.28353 -13.19261 -12.78611 -12.58956 -12.33026 -12.10881 -11.92225 -11.76375 -11.35216 -11.24891 -11.11396 -10.88440 -10.76803 -10.56882 -10.36737 -10.18760 -9.99738 -9.88878 -9.77174 -9.69531 -9.55329 -9.53100 -8.75839 -8.56716 -8.43922 -6.75562 -5.70744 -3.03389 -0.18049 0.33101 1.53523 2.37879 3.24507 3.35614 3.41178 3.47058 3.48949 3.81829 3.91980 4.08698 4.18542 4.37946 4.47960 4.51779 4.67924 4.89005 4.97150 5.06104 5.24608 5.25497 5.30292 5.40321 5.46515 5.53118 5.60306 5.64770 5.79027 5.86019 5.89818 6.03577 6.05243 6.11256 6.17840 6.27552 6.29538 6.40117 6.53157 6.60140 6.70271 6.74725 6.97105 7.28852 7.52213 7.58054 7.63859 7.81532 7.94755 8.29502 8.51607 9.21887 9.84587 10.51426 11.41697 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010085 B = 0.003698 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.757213 B = 7569.935732 C = 8585.144442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 C -0.133 4.133 4 C 0.142 3.858 5 N -0.599 5.599 6 C -0.229 4.229 7 H 0.075 0.925 8 C -0.005 4.005 9 N -0.914 5.914 10 Si 0.907 3.093 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.169 3.831 15 C 0.119 3.881 16 H 0.089 0.911 17 N -0.677 5.677 18 C 0.563 3.437 19 O -0.531 6.531 20 C 0.130 3.870 21 C -0.104 4.104 22 C -0.069 4.069 23 C -0.067 4.067 24 C -0.148 4.148 25 C 0.078 3.922 26 N -0.478 5.478 27 C 0.177 3.823 28 C 0.067 3.933 29 N -0.424 5.424 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.025 0.975 37 H 0.023 0.977 38 H 0.253 0.747 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.408 0.592 42 H 0.157 0.843 43 H 0.150 0.850 44 H 0.142 0.858 45 H 0.158 0.842 46 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.232 14.961 -8.504 19.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.086 4.086 3 C -0.191 4.191 4 C 0.016 3.984 5 N -0.326 5.326 6 C -0.358 4.358 7 H 0.093 0.907 8 C -0.202 4.202 9 N -0.561 5.561 10 Si 0.737 3.263 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.044 3.956 15 C 0.014 3.986 16 H 0.107 0.893 17 N -0.327 5.327 18 C 0.346 3.654 19 O -0.407 6.407 20 C -0.025 4.025 21 C -0.126 4.126 22 C -0.095 4.095 23 C -0.074 4.074 24 C -0.168 4.168 25 C -0.064 4.064 26 N -0.187 5.187 27 C 0.004 3.996 28 C -0.059 4.059 29 N -0.137 5.137 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.041 0.959 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.055 0.945 41 H 0.245 0.755 42 H 0.174 0.826 43 H 0.167 0.833 44 H 0.160 0.840 45 H 0.175 0.825 46 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 9.082 14.976 -7.695 19.131 hybrid contribution 0.695 -1.337 -0.663 1.646 sum 9.778 13.639 -8.358 18.748 Atomic orbital electron populations 1.21694 0.93356 1.02627 1.00956 1.21821 0.96119 0.94581 0.96089 1.21745 1.00630 0.95331 1.01376 1.21425 0.96511 0.86830 0.93598 1.44421 1.74642 1.06866 1.06622 1.18971 1.32187 0.86267 0.98336 0.90712 1.24795 1.00444 0.96931 0.97997 1.69938 1.45133 1.19032 1.22013 0.86188 0.79630 0.81845 0.78607 1.21615 1.21724 1.20675 1.21766 0.99914 0.89290 0.84673 1.22655 0.80823 0.98463 0.96652 0.89284 1.45740 1.14936 1.57874 1.14115 1.17735 0.84622 0.79850 0.83166 1.90791 1.60484 1.41816 1.47626 1.21693 0.95130 0.94955 0.90689 1.21950 0.95818 0.97618 0.97199 1.21407 0.93553 0.95566 0.98987 1.19081 0.95458 0.97963 0.94900 1.21891 0.93555 1.00026 1.01349 1.22312 1.00265 0.95478 0.88362 1.67524 1.11069 1.18294 1.21781 1.23266 0.88137 0.90118 0.98128 1.19908 0.91750 1.00234 0.93979 1.67793 1.05523 1.08411 1.31982 0.92569 0.93085 0.91586 0.92675 0.92836 0.92544 0.95691 0.95918 0.93709 0.90759 0.94492 0.75478 0.82558 0.83253 0.84032 0.82480 0.80678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.44 37.16 0.31 -1.61 16 2 C -0.09 -1.40 0.81 -152.67 -0.12 -1.52 16 3 C -0.13 -1.76 8.16 37.16 0.30 -1.46 16 4 C 0.14 2.85 6.41 -3.06 -0.02 2.84 16 5 N -0.60 -15.00 3.39 -170.07 -0.58 -15.57 16 6 C -0.23 -6.38 10.24 -15.06 -0.15 -6.54 16 7 H 0.08 2.02 7.85 -52.48 -0.41 1.61 16 8 C 0.00 -0.13 5.40 -17.43 -0.09 -0.23 16 9 N -0.91 -27.24 10.68 55.49 0.59 -26.65 16 10 Si 0.91 22.43 29.56 -169.99 -5.03 17.41 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.17 4.12 4.80 -2.53 -0.01 4.11 16 15 C 0.12 2.26 2.56 -65.78 -0.17 2.09 16 16 H 0.09 1.68 7.63 -51.93 -0.40 1.28 16 17 N -0.68 -12.06 4.66 -52.53 -0.24 -12.30 16 18 C 0.56 10.21 7.81 -12.13 -0.09 10.11 16 19 O -0.53 -10.92 16.02 5.36 0.09 -10.84 16 20 C 0.13 2.00 6.75 -82.91 -0.56 1.44 16 21 C -0.10 -1.31 9.54 -39.39 -0.38 -1.68 16 22 C -0.07 -0.69 9.93 -39.32 -0.39 -1.08 16 23 C -0.07 -0.74 5.75 -106.70 -0.61 -1.36 16 24 C -0.15 -1.26 9.88 -39.43 -0.39 -1.65 16 25 C 0.08 0.70 11.07 -17.94 -0.20 0.50 16 26 N -0.48 -5.40 10.29 -13.05 -0.13 -5.53 16 27 C 0.18 2.06 11.26 -16.86 -0.19 1.87 16 28 C 0.07 0.87 6.62 -84.88 -0.56 0.30 16 29 N -0.42 -6.20 9.49 -7.51 -0.07 -6.27 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.13 7.45 -51.93 -0.39 0.74 16 33 H 0.05 0.73 6.21 -51.93 -0.32 0.40 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.03 0.51 7.84 -51.93 -0.41 0.10 16 37 H 0.02 0.45 7.82 -51.93 -0.41 0.04 16 38 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.07 2.11 6.94 -51.93 -0.36 1.75 16 40 H 0.04 0.98 7.65 -51.93 -0.40 0.58 16 41 H 0.41 6.86 6.12 -40.82 -0.25 6.61 16 42 H 0.16 1.83 7.60 -52.49 -0.40 1.43 16 43 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 45 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.18 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 377.04 15.07 5.68 5.68 Total: -1.00 -33.39 377.04 -9.28 -42.66 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.25 Total: 5.29 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -3.33 Total: 6.13 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: -0.43 Total: -66.33 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.39 -9.28 -42.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974817916.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.938 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds