Wall clock time and date at job start Tue Mar 31 2020 23:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 110.78075 * 2 1 4 4 C 1.54319 * 110.72418 * 123.23630 * 2 1 3 5 5 N 1.47027 * 107.27180 * 96.17122 * 4 2 1 6 6 C 1.36932 * 125.64936 * 178.97736 * 5 4 2 7 7 H 1.08005 * 119.99976 * 349.94493 * 6 5 4 8 8 C 1.38816 * 119.99894 * 169.94433 * 6 5 4 9 9 N 1.31614 * 119.99975 * 350.42072 * 8 6 5 10 10 Si 1.86802 * 119.99657 * 170.42264 * 8 6 5 11 11 H 1.48496 * 109.47006 * 94.14331 * 10 8 6 12 12 H 1.48500 * 109.46736 * 214.13984 * 10 8 6 13 13 H 1.48494 * 109.47475 * 334.13794 * 10 8 6 14 14 C 1.47426 * 108.70098 * 358.94276 * 5 4 2 15 15 C 1.54908 * 104.83177 * 24.12894 * 14 5 4 16 16 H 1.09004 * 111.00237 * 204.87878 * 15 14 5 17 17 N 1.46502 * 111.00691 * 81.06153 * 15 14 5 18 18 C 1.34775 * 119.99597 * 86.45055 * 17 15 14 19 19 O 1.21506 * 120.00356 * 0.02562 * 18 17 15 20 20 C 1.48284 * 119.99870 * 180.02562 * 18 17 15 21 21 C 1.40371 * 119.18712 * 179.72879 * 20 18 17 22 22 C 1.36557 * 119.82493 * 179.75888 * 21 20 18 23 23 C 1.40552 * 118.05830 * 0.50101 * 22 21 20 24 24 C 1.40522 * 122.21620 * 179.76799 * 23 22 21 25 25 C 1.36255 * 118.68811 * 179.97438 * 24 23 22 26 26 N 1.32589 * 121.80381 * 0.02991 * 25 24 23 27 27 C 1.31121 * 122.87110 * 359.94859 * 26 25 24 28 28 C 1.40859 * 119.95865 * 0.04470 * 27 26 25 29 29 N 1.31886 * 119.19122 * 359.97438 * 20 18 17 30 30 H 1.09003 * 109.46885 * 298.21210 * 1 2 3 31 31 H 1.08995 * 109.47521 * 58.21298 * 1 2 3 32 32 H 1.09000 * 109.47016 * 178.21677 * 1 2 3 33 33 H 1.08999 * 109.47383 * 181.78587 * 3 2 1 34 34 H 1.09001 * 109.46474 * 301.78804 * 3 2 1 35 35 H 1.09006 * 109.46903 * 61.78203 * 3 2 1 36 36 H 1.09006 * 109.88014 * 336.75529 * 4 2 1 37 37 H 1.09001 * 109.88668 * 215.59287 * 4 2 1 38 38 H 0.96998 * 120.00188 * 180.02562 * 9 8 6 39 39 H 1.09001 * 110.36669 * 142.96708 * 14 5 4 40 40 H 1.08999 * 110.36708 * 265.18354 * 14 5 4 41 41 H 0.96994 * 120.00509 * 266.45405 * 17 15 14 42 42 H 1.08000 * 120.09059 * 0.02914 * 21 20 18 43 43 H 1.08000 * 120.96955 * 180.25240 * 22 21 20 44 44 H 1.08006 * 120.65676 * 359.97438 * 24 23 22 45 45 H 1.07998 * 119.09811 * 179.97438 * 25 24 23 46 46 H 1.08006 * 120.01811 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4306 0.0000 4 6 2.0760 -0.7911 1.2072 5 7 2.3717 -2.1531 0.7390 6 6 2.8934 -3.1636 1.5018 7 1 3.2738 -2.9527 2.4904 8 6 2.9332 -4.4590 1.0044 9 7 2.3046 -4.7542 -0.1136 10 14 3.8791 -5.7830 1.9219 11 1 2.9550 -6.5167 2.8235 12 1 4.4757 -6.7308 0.9468 13 1 4.9585 -5.1540 2.7247 14 6 2.0127 -2.2509 -0.6875 15 6 2.0790 -0.7954 -1.2138 16 1 1.4401 -0.6664 -2.0875 17 7 3.4595 -0.4081 -1.5144 18 6 3.9887 -0.6838 -2.7228 19 8 3.3208 -1.2533 -3.5631 20 6 5.3862 -0.2923 -3.0270 21 6 5.9222 -0.5930 -4.2891 22 6 7.2061 -0.2341 -4.5848 23 6 7.9539 0.4234 -3.5928 24 6 9.2836 0.8273 -3.8015 25 6 9.9413 1.4601 -2.7898 26 7 9.3611 1.7013 -1.6223 27 6 8.1249 1.3540 -1.3567 28 6 7.3544 0.6937 -2.3337 29 7 6.0967 0.3255 -2.1035 30 1 -0.3633 0.4858 0.9056 31 1 -0.3634 0.5413 -0.8735 32 1 -0.3633 -1.0272 -0.0320 33 1 3.1621 1.4059 -0.0320 34 1 1.6955 1.9622 -0.8736 35 1 1.7474 1.9426 0.9056 36 1 1.3263 -0.8254 1.9977 37 1 2.9868 -0.3205 1.5776 38 1 2.3321 -5.6595 -0.4610 39 1 2.7294 -2.8787 -1.2169 40 1 1.0047 -2.6506 -0.7985 41 1 3.9926 0.0468 -0.8439 42 1 5.3193 -1.1031 -5.0258 43 1 7.6357 -0.4526 -5.5513 44 1 9.7745 0.6398 -4.7451 45 1 10.9636 1.7730 -2.9429 46 1 7.6978 1.5739 -0.3894 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974817916.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:56 Heat of formation + Delta-G solvation = 38.622322 kcal Electronic energy + Delta-G solvation = -29699.108409 eV Core-core repulsion = 25781.589516 eV Total energy + Delta-G solvation = -3917.518893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.39641 -41.21543 -39.74215 -38.62969 -35.73143 -35.09701 -34.38160 -32.68409 -32.63498 -31.56640 -29.85242 -28.11905 -27.47925 -26.72733 -25.53964 -24.84424 -23.75825 -22.71036 -21.61599 -20.47413 -19.48361 -19.04906 -18.69759 -18.49312 -17.36513 -17.20421 -16.73032 -16.34068 -15.95457 -15.82303 -15.66964 -15.38635 -15.29927 -15.17225 -14.67549 -14.53807 -14.16308 -14.11523 -13.77598 -13.65970 -13.55268 -13.20005 -13.11149 -13.05456 -12.81610 -12.65120 -12.59589 -12.13136 -11.95746 -11.84207 -11.82691 -11.63105 -11.55106 -11.37100 -10.88514 -10.69627 -10.54834 -10.49037 -10.04410 -9.51717 -8.83392 -7.87982 -5.22287 -1.07091 -0.56360 0.68629 1.33972 1.41287 1.43039 1.52174 1.97518 2.21890 2.47024 2.78013 2.97450 3.31256 3.31697 3.43556 3.51459 3.55294 3.61591 3.66914 3.75200 3.94840 4.05621 4.07060 4.26959 4.39158 4.47681 4.49254 4.61979 4.66725 4.71400 4.82589 4.84072 4.88478 4.92949 5.02116 5.04040 5.10849 5.18867 5.25449 5.27895 5.33344 5.46024 5.49886 5.53543 5.65039 5.68608 6.18805 6.26150 6.56939 6.84475 7.06058 7.10537 7.76193 8.42586 9.23083 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010085 B = 0.003698 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.757213 B = 7569.935732 C = 8585.144442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.071 4.071 3 C -0.125 4.125 4 C 0.137 3.863 5 N -0.617 5.617 6 C -0.239 4.239 7 H 0.081 0.919 8 C -0.064 4.064 9 N -0.947 5.947 10 Si 0.972 3.028 11 H -0.284 1.284 12 H -0.298 1.298 13 H -0.268 1.268 14 C 0.183 3.817 15 C 0.132 3.868 16 H 0.090 0.910 17 N -0.674 5.674 18 C 0.559 3.441 19 O -0.565 6.565 20 C 0.106 3.894 21 C -0.123 4.123 22 C -0.044 4.044 23 C -0.078 4.078 24 C -0.132 4.132 25 C 0.072 3.928 26 N -0.489 5.489 27 C 0.164 3.836 28 C 0.045 3.955 29 N -0.439 5.439 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.027 0.973 37 H 0.033 0.967 38 H 0.245 0.755 39 H 0.025 0.975 40 H 0.003 0.997 41 H 0.413 0.587 42 H 0.158 0.842 43 H 0.195 0.805 44 H 0.185 0.815 45 H 0.192 0.808 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.821 17.345 -8.977 22.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.072 4.072 3 C -0.183 4.183 4 C 0.013 3.987 5 N -0.343 5.343 6 C -0.368 4.368 7 H 0.099 0.901 8 C -0.257 4.257 9 N -0.596 5.596 10 Si 0.800 3.200 11 H -0.210 1.210 12 H -0.225 1.225 13 H -0.193 1.193 14 C 0.056 3.944 15 C 0.026 3.974 16 H 0.108 0.892 17 N -0.324 5.324 18 C 0.344 3.656 19 O -0.444 6.444 20 C -0.048 4.048 21 C -0.145 4.145 22 C -0.069 4.069 23 C -0.085 4.085 24 C -0.151 4.151 25 C -0.070 4.070 26 N -0.198 5.198 27 C -0.010 4.010 28 C -0.081 4.081 29 N -0.152 5.152 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.045 0.955 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.043 0.957 40 H 0.021 0.979 41 H 0.252 0.748 42 H 0.175 0.825 43 H 0.213 0.787 44 H 0.202 0.798 45 H 0.209 0.791 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 11.679 17.411 -8.130 22.487 hybrid contribution 0.043 -2.011 -0.516 2.077 sum 11.723 15.400 -8.646 21.198 Atomic orbital electron populations 1.21694 0.92007 1.01375 1.03274 1.21815 0.97117 0.95836 0.92470 1.21704 1.00509 0.92725 1.03351 1.21654 0.97056 0.84831 0.95190 1.44656 1.74459 1.08292 1.06893 1.19380 1.31526 0.87190 0.98699 0.90133 1.25614 1.01815 0.99220 0.99048 1.70171 1.46848 1.18806 1.23748 0.85170 0.78541 0.78987 0.77302 1.21040 1.22490 1.19317 1.21395 0.96388 0.92002 0.84603 1.22346 0.81980 0.95460 0.97612 0.89232 1.45675 1.14495 1.57815 1.14439 1.18282 0.85865 0.78833 0.82642 1.90751 1.61825 1.43256 1.48552 1.21341 0.93823 0.97286 0.92362 1.22011 0.97306 0.98935 0.96256 1.21863 0.91936 0.92886 1.00244 1.19436 0.96827 0.97960 0.94312 1.22318 0.92028 0.97990 1.02808 1.22962 1.01664 0.94788 0.87593 1.67569 1.10740 1.18303 1.23227 1.23378 0.88480 0.90673 0.98432 1.20186 0.91340 1.01043 0.95556 1.67639 1.06618 1.08736 1.32210 0.90301 0.90697 0.94643 0.92768 0.91191 0.90222 0.95541 0.94909 0.94594 0.95682 0.97911 0.74843 0.82466 0.78746 0.79791 0.79086 0.80142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 8.44 71.98 0.61 -3.04 16 2 C -0.07 -2.31 0.81 -50.99 -0.04 -2.35 16 3 C -0.13 -3.01 8.16 71.99 0.59 -2.43 16 4 C 0.14 5.52 6.41 86.73 0.56 6.08 16 5 N -0.62 -32.09 3.39 -691.97 -2.35 -34.43 16 6 C -0.24 -13.69 10.24 84.04 0.86 -12.83 16 7 H 0.08 4.41 7.85 -2.91 -0.02 4.39 16 8 C -0.06 -3.75 5.40 84.86 0.46 -3.29 16 9 N -0.95 -59.67 10.68 21.65 0.23 -59.44 16 10 Si 0.97 47.46 29.56 68.60 2.03 49.49 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 12 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 13 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 14 C 0.18 9.49 4.80 86.85 0.42 9.91 16 15 C 0.13 5.20 2.56 46.38 0.12 5.31 16 16 H 0.09 3.52 7.63 -2.38 -0.02 3.51 16 17 N -0.67 -24.94 4.66 -438.39 -2.04 -26.98 16 18 C 0.56 21.31 7.81 86.92 0.68 21.99 16 19 O -0.57 -24.72 16.02 -3.74 -0.06 -24.78 16 20 C 0.11 3.34 6.75 42.33 0.29 3.62 16 21 C -0.12 -3.06 9.54 22.40 0.21 -2.85 16 22 C -0.04 -0.76 9.93 22.44 0.22 -0.53 16 23 C -0.08 -1.53 5.75 -21.21 -0.12 -1.65 16 24 C -0.13 -1.66 9.88 22.36 0.22 -1.44 16 25 C 0.07 1.02 11.07 84.12 0.93 1.95 16 26 N -0.49 -10.02 10.29 -195.20 -2.01 -12.02 16 27 C 0.16 3.66 11.26 85.44 0.96 4.62 16 28 C 0.04 1.12 6.62 40.54 0.27 1.39 16 29 N -0.44 -13.00 9.49 -177.69 -1.69 -14.68 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.03 1.23 7.45 -2.39 -0.02 1.21 16 33 H 0.05 1.33 6.21 -2.39 -0.01 1.31 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.03 1.07 7.84 -2.38 -0.02 1.05 16 37 H 0.03 1.26 7.82 -2.39 -0.02 1.24 16 38 H 0.24 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.02 1.53 6.94 -2.39 -0.02 1.51 16 40 H 0.00 0.17 7.65 -2.39 -0.02 0.16 16 41 H 0.41 14.21 6.12 -92.71 -0.57 13.64 16 42 H 0.16 3.76 7.60 -2.91 -0.02 3.73 16 43 H 0.20 1.49 8.06 -2.91 -0.02 1.47 16 44 H 0.18 0.76 8.06 -2.91 -0.02 0.73 16 45 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 46 H 0.18 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -78.85 377.04 1.78 -77.07 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.44 Total: 21.33 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: 7.23 Total: 24.46 kcal Atomic # 7 Polarization: -139.71 SS G_CDS: -7.85 Total: -147.57 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.06 Total: -24.78 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -78.85 1.78 -77.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974817916.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.693 kcal (2) G-P(sol) polarization free energy of solvation -78.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds