Wall clock time and date at job start Tue Mar 31 2020 23:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 110.91328 * 2 1 4 4 C 1.55391 * 111.18882 * 235.94728 * 2 1 3 5 5 N 1.47423 * 104.87180 * 204.98107 * 4 2 1 6 6 C 1.36939 * 125.64505 * 204.16835 * 5 4 2 7 7 H 1.08006 * 120.00072 * 359.97400 * 6 5 4 8 8 C 1.38809 * 119.99967 * 179.97438 * 6 5 4 9 9 N 1.31622 * 120.00101 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99997 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46812 * 90.00218 * 10 8 6 12 12 H 1.48501 * 109.47094 * 210.00393 * 10 8 6 13 13 H 1.48500 * 109.47101 * 330.00327 * 10 8 6 14 14 C 1.47020 * 108.70635 * 24.13063 * 5 4 2 15 15 C 1.54321 * 107.27161 * 358.93948 * 14 5 4 16 16 H 1.09001 * 110.72151 * 219.26875 * 15 14 5 17 17 N 1.46499 * 110.71875 * 96.17161 * 15 14 5 18 18 C 1.34775 * 120.00003 * 88.84481 * 17 15 14 19 19 O 1.21490 * 119.99920 * 359.97438 * 18 17 15 20 20 C 1.48379 * 120.00081 * 180.02562 * 18 17 15 21 21 C 1.40211 * 119.21723 * 179.97438 * 20 18 17 22 22 C 1.36641 * 119.90208 * 180.02562 * 21 20 18 23 23 C 1.40558 * 118.11219 * 359.97438 * 22 21 20 24 24 C 1.40401 * 122.05924 * 179.97438 * 23 22 21 25 25 N 1.31248 * 119.87340 * 180.02562 * 24 23 22 26 26 C 1.32610 * 122.67870 * 359.72559 * 25 24 23 27 27 C 1.36093 * 121.99577 * 0.55344 * 26 25 24 28 28 C 1.40945 * 118.76997 * 359.46552 * 27 26 25 29 29 N 1.31980 * 119.21967 * 359.97438 * 20 18 17 30 30 H 1.09005 * 109.46786 * 296.09321 * 1 2 3 31 31 H 1.08996 * 109.47366 * 56.09177 * 1 2 3 32 32 H 1.09002 * 109.46921 * 176.09842 * 1 2 3 33 33 H 1.09004 * 109.47182 * 183.90232 * 3 2 1 34 34 H 1.08993 * 109.47353 * 303.90448 * 3 2 1 35 35 H 1.09007 * 109.46630 * 63.90637 * 3 2 1 36 36 H 1.09000 * 110.34648 * 86.12170 * 4 2 1 37 37 H 1.09001 * 110.43824 * 323.87943 * 4 2 1 38 38 H 0.96995 * 120.00205 * 179.97438 * 9 8 6 39 39 H 1.09000 * 109.88077 * 239.52847 * 14 5 4 40 40 H 1.08992 * 109.88295 * 118.35630 * 14 5 4 41 41 H 0.97001 * 120.00224 * 268.84172 * 17 15 14 42 42 H 1.07997 * 120.05189 * 0.04625 * 21 20 18 43 43 H 1.08000 * 120.94456 * 179.97438 * 22 21 20 44 44 H 1.07997 * 120.06922 * 0.04400 * 24 23 22 45 45 H 1.08000 * 118.99947 * 180.27035 * 26 25 24 46 46 H 1.08002 * 120.61839 * 179.75076 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0917 -0.8113 -1.2004 5 7 3.4327 -1.2460 -0.7690 6 6 4.4724 -1.5691 -1.5995 7 1 4.3447 -1.5159 -2.6706 8 6 5.6906 -1.9652 -1.0647 9 7 5.8462 -2.0306 0.2407 10 14 7.1088 -2.4067 -2.1976 11 1 7.9115 -1.1904 -2.4828 12 1 7.9683 -3.4244 -1.5412 13 1 6.5738 -2.9563 -3.4692 14 6 3.4691 -1.2742 0.7005 15 6 2.0862 -0.8080 1.2022 16 1 2.1893 -0.1708 2.0805 17 7 1.2269 -1.9575 1.4961 18 6 1.2428 -2.5144 2.7233 19 8 1.9702 -2.0635 3.5856 20 6 0.3729 -3.6791 3.0208 21 6 0.4030 -4.2460 4.3028 22 6 -0.3919 -5.3191 4.5919 23 6 -1.2230 -5.8206 3.5754 24 6 -2.0722 -6.9196 3.7814 25 7 -2.8302 -7.3528 2.8014 26 6 -2.8393 -6.7899 1.6007 27 6 -2.0493 -5.7239 1.2981 28 6 -1.2058 -5.1991 2.2979 29 7 -0.4108 -4.1568 2.0724 30 1 -0.3633 0.4520 0.9230 31 1 -0.3634 0.5733 -0.8528 32 1 -0.3633 -1.0253 -0.0699 33 1 3.1637 1.4026 -0.0699 34 1 1.6705 1.9732 -0.8529 35 1 1.7836 1.9299 0.9230 36 1 2.1642 -0.1783 -2.0848 37 1 1.4600 -1.6759 -1.4044 38 1 6.6973 -2.3077 0.6144 39 1 4.2428 -0.5986 1.0651 40 1 3.6664 -2.2886 1.0470 41 1 0.6464 -2.3178 0.8075 42 1 1.0532 -3.8349 5.0608 43 1 -0.3819 -5.7692 5.5736 44 1 -2.1020 -7.4073 4.7445 45 1 -3.4900 -7.1926 0.8387 46 1 -2.0716 -5.2852 0.3114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975098897.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:03 Heat of formation + Delta-G solvation = 61.910189 kcal Electronic energy + Delta-G solvation = -29501.210113 eV Core-core repulsion = 25584.701058 eV Total energy + Delta-G solvation = -3916.509055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.50978 -39.86089 -38.46660 -37.47047 -34.19489 -33.76725 -33.00865 -31.84496 -30.71425 -30.68450 -28.21673 -26.93886 -25.79640 -25.56986 -24.47510 -23.35488 -22.94548 -21.11756 -19.99656 -19.16271 -18.65320 -17.92577 -17.50007 -16.68584 -16.19403 -15.79708 -15.34768 -15.12975 -14.74435 -14.63578 -14.46148 -14.20144 -13.88691 -13.78202 -13.56452 -13.28754 -13.23168 -12.84129 -12.56570 -12.47895 -12.05654 -11.96983 -11.67229 -11.38361 -11.07065 -11.02108 -10.98510 -10.77626 -10.45397 -10.31304 -10.24104 -10.01337 -10.00127 -9.86822 -9.64404 -9.56053 -9.55291 -8.82720 -8.63445 -8.48056 -6.81427 -5.68019 -3.02550 -0.21787 0.28867 1.53527 2.33861 3.19125 3.29741 3.41275 3.46119 3.48397 3.79610 3.87023 4.00991 4.17804 4.36447 4.43816 4.51144 4.64321 4.91144 4.94770 5.02415 5.27555 5.28289 5.32237 5.37234 5.44677 5.55146 5.60785 5.63334 5.76154 5.80404 5.93493 6.03185 6.03989 6.15918 6.19279 6.25722 6.28910 6.38156 6.57442 6.62894 6.67107 6.70355 6.94257 7.30566 7.55605 7.56133 7.63001 7.81036 7.90040 8.26490 8.44082 9.23248 9.84039 10.49426 11.42800 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012048 B = 0.003145 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.446433 B = 8899.559567 C = 9498.661202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.089 4.089 3 C -0.126 4.126 4 C 0.143 3.857 5 N -0.602 5.602 6 C -0.229 4.229 7 H 0.078 0.922 8 C -0.007 4.007 9 N -0.919 5.919 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.176 3.824 15 C 0.120 3.880 16 H 0.091 0.909 17 N -0.682 5.682 18 C 0.561 3.439 19 O -0.527 6.527 20 C 0.151 3.849 21 C -0.129 4.129 22 C -0.040 4.040 23 C -0.157 4.157 24 C 0.159 3.841 25 N -0.486 5.486 26 C 0.085 3.915 27 C -0.133 4.133 28 C 0.153 3.847 29 N -0.448 5.448 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.041 0.959 37 H 0.017 0.983 38 H 0.252 0.748 39 H 0.056 0.944 40 H 0.048 0.952 41 H 0.407 0.593 42 H 0.157 0.843 43 H 0.153 0.847 44 H 0.168 0.832 45 H 0.161 0.839 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.183 -4.458 7.131 20.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.091 4.091 3 C -0.183 4.183 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.357 4.357 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.741 3.259 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.051 3.949 15 C 0.015 3.985 16 H 0.109 0.891 17 N -0.333 5.333 18 C 0.344 3.656 19 O -0.402 6.402 20 C -0.004 4.004 21 C -0.149 4.149 22 C -0.068 4.068 23 C -0.161 4.161 24 C -0.015 4.015 25 N -0.194 5.194 26 C -0.058 4.058 27 C -0.153 4.153 28 C 0.025 3.975 29 N -0.159 5.159 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.034 0.966 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.244 0.756 42 H 0.175 0.825 43 H 0.170 0.830 44 H 0.185 0.815 45 H 0.178 0.822 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.070 -4.553 6.834 19.849 hybrid contribution 1.170 -0.211 -0.301 1.226 sum -16.901 -4.764 6.533 18.735 Atomic orbital electron populations 1.21683 0.94637 1.01311 1.01341 1.22096 0.94487 0.96016 0.96453 1.21597 1.02537 0.93622 1.00567 1.21721 0.87747 0.94556 0.94268 1.44420 1.07630 1.79052 1.01766 1.19024 0.89263 1.38484 0.88941 0.90463 1.24803 0.97824 1.01782 0.95951 1.69954 1.24234 1.53383 1.09037 0.86142 0.82449 0.77798 0.79489 1.21618 1.21757 1.20785 1.21523 0.89380 1.00507 0.83513 1.22618 0.92454 0.86004 0.97377 0.89135 1.45904 1.42995 1.32222 1.12151 1.17806 0.82102 0.82302 0.83404 1.90798 1.40451 1.62243 1.46713 1.21785 0.93245 0.94985 0.90397 1.21881 0.99497 0.96120 0.97448 1.21444 0.92356 0.94164 0.98827 1.19949 1.00742 0.99623 0.95813 1.23231 0.89220 0.90952 0.98094 1.67491 1.21012 1.29968 1.00889 1.22260 0.97075 0.92720 0.93788 1.21822 0.95918 0.97556 1.00004 1.18901 0.94500 0.91899 0.92194 1.67911 1.04714 1.10446 1.32871 0.92891 0.92568 0.92862 0.91137 0.92816 0.93305 0.94038 0.96587 0.93718 0.92602 0.93395 0.75619 0.82526 0.82966 0.81481 0.82201 0.83284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 8.23 37.16 0.31 -1.45 16 2 C -0.09 -1.48 0.84 -152.10 -0.13 -1.61 16 3 C -0.13 -1.98 8.58 37.16 0.32 -1.66 16 4 C 0.14 2.86 6.16 -2.27 -0.01 2.85 16 5 N -0.60 -15.05 3.38 -169.77 -0.57 -15.63 16 6 C -0.23 -6.33 10.28 -15.06 -0.15 -6.49 16 7 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 9 N -0.92 -27.35 10.31 55.49 0.57 -26.78 16 10 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.18 4.32 4.80 -3.07 -0.01 4.31 16 15 C 0.12 2.29 2.54 -66.10 -0.17 2.13 16 16 H 0.09 1.75 7.53 -51.93 -0.39 1.36 16 17 N -0.68 -11.94 4.50 -52.80 -0.24 -12.18 16 18 C 0.56 9.93 7.82 -12.09 -0.09 9.84 16 19 O -0.53 -10.66 15.96 5.37 0.09 -10.57 16 20 C 0.15 2.24 6.75 -82.89 -0.56 1.68 16 21 C -0.13 -1.54 9.54 -39.42 -0.38 -1.91 16 22 C -0.04 -0.36 9.92 -39.28 -0.39 -0.75 16 23 C -0.16 -1.64 5.75 -106.74 -0.61 -2.26 16 24 C 0.16 1.39 11.05 -16.99 -0.19 1.21 16 25 N -0.49 -4.93 10.30 -13.18 -0.14 -5.06 16 26 C 0.09 0.79 11.05 -17.99 -0.20 0.59 16 27 C -0.13 -1.38 10.08 -39.33 -0.40 -1.77 16 28 C 0.15 1.91 6.63 -84.86 -0.56 1.35 16 29 N -0.45 -6.39 9.50 -7.49 -0.07 -6.46 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.69 6.44 -51.93 -0.33 0.36 16 33 H 0.07 1.31 7.91 -51.93 -0.41 0.90 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 36 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 37 H 0.02 0.32 8.00 -51.93 -0.42 -0.09 16 38 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.06 1.54 7.38 -51.93 -0.38 1.15 16 40 H 0.05 1.36 7.41 -51.93 -0.38 0.97 16 41 H 0.41 6.66 6.32 -40.82 -0.26 6.40 16 42 H 0.16 1.74 7.60 -52.49 -0.40 1.34 16 43 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 46 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 377.92 15.07 5.70 5.70 Total: -1.00 -33.61 377.92 -9.34 -42.95 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -6.32 Total: 5.02 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -3.33 Total: 5.74 kcal Atomic # 7 Polarization: -65.66 SS G_CDS: -0.45 Total: -66.11 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.61 -9.34 -42.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975098897.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.860 kcal (2) G-P(sol) polarization free energy of solvation -33.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds