Wall clock time and date at job start Tue Mar 31 2020 23:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 110.91328 * 2 1 4 4 C 1.55391 * 111.18882 * 235.94728 * 2 1 3 5 5 N 1.47423 * 104.87180 * 204.98107 * 4 2 1 6 6 C 1.36939 * 125.64505 * 204.16835 * 5 4 2 7 7 H 1.08006 * 120.00072 * 359.97400 * 6 5 4 8 8 C 1.38809 * 119.99967 * 179.97438 * 6 5 4 9 9 N 1.31622 * 120.00101 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99997 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46812 * 90.00218 * 10 8 6 12 12 H 1.48501 * 109.47094 * 210.00393 * 10 8 6 13 13 H 1.48500 * 109.47101 * 330.00327 * 10 8 6 14 14 C 1.47020 * 108.70635 * 24.13063 * 5 4 2 15 15 C 1.54321 * 107.27161 * 358.93948 * 14 5 4 16 16 H 1.09001 * 110.72151 * 219.26875 * 15 14 5 17 17 N 1.46499 * 110.71875 * 96.17161 * 15 14 5 18 18 C 1.34775 * 120.00003 * 88.84481 * 17 15 14 19 19 O 1.21490 * 119.99920 * 359.97438 * 18 17 15 20 20 C 1.48379 * 120.00081 * 180.02562 * 18 17 15 21 21 C 1.40211 * 119.21723 * 179.97438 * 20 18 17 22 22 C 1.36641 * 119.90208 * 180.02562 * 21 20 18 23 23 C 1.40558 * 118.11219 * 359.97438 * 22 21 20 24 24 C 1.40401 * 122.05924 * 179.97438 * 23 22 21 25 25 N 1.31248 * 119.87340 * 180.02562 * 24 23 22 26 26 C 1.32610 * 122.67870 * 359.72559 * 25 24 23 27 27 C 1.36093 * 121.99577 * 0.55344 * 26 25 24 28 28 C 1.40945 * 118.76997 * 359.46552 * 27 26 25 29 29 N 1.31980 * 119.21967 * 359.97438 * 20 18 17 30 30 H 1.09005 * 109.46786 * 296.09321 * 1 2 3 31 31 H 1.08996 * 109.47366 * 56.09177 * 1 2 3 32 32 H 1.09002 * 109.46921 * 176.09842 * 1 2 3 33 33 H 1.09004 * 109.47182 * 183.90232 * 3 2 1 34 34 H 1.08993 * 109.47353 * 303.90448 * 3 2 1 35 35 H 1.09007 * 109.46630 * 63.90637 * 3 2 1 36 36 H 1.09000 * 110.34648 * 86.12170 * 4 2 1 37 37 H 1.09001 * 110.43824 * 323.87943 * 4 2 1 38 38 H 0.96995 * 120.00205 * 179.97438 * 9 8 6 39 39 H 1.09000 * 109.88077 * 239.52847 * 14 5 4 40 40 H 1.08992 * 109.88295 * 118.35630 * 14 5 4 41 41 H 0.97001 * 120.00224 * 268.84172 * 17 15 14 42 42 H 1.07997 * 120.05189 * 0.04625 * 21 20 18 43 43 H 1.08000 * 120.94456 * 179.97438 * 22 21 20 44 44 H 1.07997 * 120.06922 * 0.04400 * 24 23 22 45 45 H 1.08000 * 118.99947 * 180.27035 * 26 25 24 46 46 H 1.08002 * 120.61839 * 179.75076 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0917 -0.8113 -1.2004 5 7 3.4327 -1.2460 -0.7690 6 6 4.4724 -1.5691 -1.5995 7 1 4.3447 -1.5159 -2.6706 8 6 5.6906 -1.9652 -1.0647 9 7 5.8462 -2.0306 0.2407 10 14 7.1088 -2.4067 -2.1976 11 1 7.9115 -1.1904 -2.4828 12 1 7.9683 -3.4244 -1.5412 13 1 6.5738 -2.9563 -3.4692 14 6 3.4691 -1.2742 0.7005 15 6 2.0862 -0.8080 1.2022 16 1 2.1893 -0.1708 2.0805 17 7 1.2269 -1.9575 1.4961 18 6 1.2428 -2.5144 2.7233 19 8 1.9702 -2.0635 3.5856 20 6 0.3729 -3.6791 3.0208 21 6 0.4030 -4.2460 4.3028 22 6 -0.3919 -5.3191 4.5919 23 6 -1.2230 -5.8206 3.5754 24 6 -2.0722 -6.9196 3.7814 25 7 -2.8302 -7.3528 2.8014 26 6 -2.8393 -6.7899 1.6007 27 6 -2.0493 -5.7239 1.2981 28 6 -1.2058 -5.1991 2.2979 29 7 -0.4108 -4.1568 2.0724 30 1 -0.3633 0.4520 0.9230 31 1 -0.3634 0.5733 -0.8528 32 1 -0.3633 -1.0253 -0.0699 33 1 3.1637 1.4026 -0.0699 34 1 1.6705 1.9732 -0.8529 35 1 1.7836 1.9299 0.9230 36 1 2.1642 -0.1783 -2.0848 37 1 1.4600 -1.6759 -1.4044 38 1 6.6973 -2.3077 0.6144 39 1 4.2428 -0.5986 1.0651 40 1 3.6664 -2.2886 1.0470 41 1 0.6464 -2.3178 0.8075 42 1 1.0532 -3.8349 5.0608 43 1 -0.3819 -5.7692 5.5736 44 1 -2.1020 -7.4073 4.7445 45 1 -3.4900 -7.1926 0.8387 46 1 -2.0716 -5.2852 0.3114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000975098897.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:02 Heat of formation + Delta-G solvation = 39.012965 kcal Electronic energy + Delta-G solvation = -29502.203011 eV Core-core repulsion = 25584.701058 eV Total energy + Delta-G solvation = -3917.501953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.39451 -41.23977 -39.74028 -38.64386 -35.77848 -34.96809 -34.38830 -32.77298 -32.62608 -31.49643 -29.90057 -28.16221 -27.49295 -26.82636 -25.40951 -24.90382 -23.74690 -22.61892 -21.67062 -20.48818 -19.61813 -19.15177 -18.70720 -18.31873 -17.32821 -17.12746 -16.75508 -16.36119 -15.93991 -15.74481 -15.60316 -15.50235 -15.32997 -15.32086 -14.78977 -14.42955 -14.11693 -14.02684 -13.81634 -13.70182 -13.47201 -13.32711 -13.16888 -12.97350 -12.85187 -12.70807 -12.61779 -12.13691 -11.89512 -11.81378 -11.80061 -11.56891 -11.49469 -11.33785 -10.95179 -10.76112 -10.54580 -10.49478 -10.05656 -9.58922 -8.90733 -7.84637 -5.21344 -1.08281 -0.54740 0.73093 1.31015 1.42975 1.45378 1.53839 1.92432 2.20917 2.47944 2.78176 2.98052 3.33510 3.36172 3.43594 3.45548 3.56655 3.59740 3.70287 3.78276 3.92973 4.02124 4.05199 4.27026 4.35913 4.48756 4.52717 4.62365 4.67521 4.76035 4.82940 4.84833 4.85405 4.92609 4.93452 5.01778 5.10478 5.14557 5.24658 5.27814 5.32043 5.44067 5.53520 5.54141 5.65929 5.70685 6.16117 6.26100 6.55908 6.84291 7.03354 7.08395 7.76129 8.40767 9.24731 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012048 B = 0.003145 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.446433 B = 8899.559567 C = 9498.661202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.074 4.074 3 C -0.122 4.122 4 C 0.138 3.862 5 N -0.620 5.620 6 C -0.238 4.238 7 H 0.086 0.914 8 C -0.069 4.069 9 N -0.953 5.953 10 Si 0.978 3.022 11 H -0.284 1.284 12 H -0.299 1.299 13 H -0.267 1.267 14 C 0.194 3.806 15 C 0.132 3.868 16 H 0.086 0.914 17 N -0.679 5.679 18 C 0.557 3.443 19 O -0.561 6.561 20 C 0.128 3.872 21 C -0.149 4.149 22 C -0.009 4.009 23 C -0.166 4.166 24 C 0.172 3.828 25 N -0.503 5.503 26 C 0.094 3.906 27 C -0.150 4.150 28 C 0.129 3.871 29 N -0.467 5.467 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.032 0.968 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.024 0.976 38 H 0.244 0.756 39 H 0.012 0.988 40 H -0.002 1.002 41 H 0.413 0.587 42 H 0.158 0.842 43 H 0.203 0.797 44 H 0.210 0.790 45 H 0.188 0.812 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.225 -5.583 7.010 23.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.075 4.075 3 C -0.180 4.180 4 C 0.013 3.987 5 N -0.346 5.346 6 C -0.367 4.367 7 H 0.104 0.896 8 C -0.262 4.262 9 N -0.602 5.602 10 Si 0.807 3.193 11 H -0.211 1.211 12 H -0.226 1.226 13 H -0.192 1.192 14 C 0.068 3.932 15 C 0.027 3.973 16 H 0.104 0.896 17 N -0.329 5.329 18 C 0.342 3.658 19 O -0.440 6.440 20 C -0.026 4.026 21 C -0.170 4.170 22 C -0.037 4.037 23 C -0.171 4.171 24 C -0.001 4.001 25 N -0.210 5.210 26 C -0.049 4.049 27 C -0.170 4.170 28 C 0.001 3.999 29 N -0.179 5.179 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.042 0.958 38 H 0.053 0.947 39 H 0.031 0.969 40 H 0.016 0.984 41 H 0.251 0.749 42 H 0.176 0.824 43 H 0.220 0.780 44 H 0.227 0.773 45 H 0.205 0.795 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -21.167 -5.667 6.668 22.905 hybrid contribution 2.009 0.022 -0.263 2.026 sum -19.158 -5.645 6.406 20.975 Atomic orbital electron populations 1.21637 0.91101 1.02208 1.03155 1.22074 0.97034 0.95496 0.92909 1.21587 1.00148 0.93433 1.02828 1.21955 0.85477 0.95295 0.95944 1.44666 1.09167 1.78969 1.01769 1.19476 0.90117 1.37311 0.89791 0.89573 1.25676 1.00600 1.02572 0.97311 1.70225 1.24160 1.54850 1.10939 0.85079 0.79053 0.77234 0.77976 1.21127 1.22577 1.19163 1.21082 0.91734 0.96655 0.83719 1.22264 0.90203 0.86710 0.98130 0.89581 1.45783 1.42608 1.31936 1.12589 1.18368 0.81866 0.82756 0.82817 1.90759 1.42027 1.63533 1.47636 1.21417 0.94189 0.94900 0.92078 1.21959 1.01031 0.97611 0.96352 1.21942 0.89455 0.91949 1.00321 1.20244 1.01355 1.00149 0.95304 1.23894 0.87288 0.89649 0.99285 1.67616 1.21627 1.30376 1.01429 1.22701 0.96333 0.91687 0.94201 1.21976 0.96439 0.98422 1.00190 1.19325 0.94736 0.91881 0.93993 1.67773 1.05359 1.11639 1.33138 0.91637 0.90047 0.92598 0.94848 0.90180 0.91342 0.93084 0.95814 0.94713 0.96938 0.98367 0.74872 0.82407 0.78027 0.77345 0.79524 0.82627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.97 8.23 71.98 0.59 -2.38 16 2 C -0.07 -2.41 0.84 -50.62 -0.04 -2.46 16 3 C -0.12 -3.76 8.58 71.98 0.62 -3.14 16 4 C 0.14 5.49 6.16 87.02 0.54 6.03 16 5 N -0.62 -32.21 3.38 -691.04 -2.34 -34.55 16 6 C -0.24 -13.55 10.28 84.03 0.86 -12.69 16 7 H 0.09 4.63 7.83 -2.91 -0.02 4.61 16 8 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 9 N -0.95 -60.23 10.31 21.65 0.22 -60.00 16 10 Si 0.98 47.20 29.55 68.60 2.03 49.22 16 11 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 12 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 13 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 14 C 0.19 10.24 4.80 86.73 0.42 10.66 16 15 C 0.13 5.29 2.54 46.18 0.12 5.41 16 16 H 0.09 3.52 7.53 -2.39 -0.02 3.50 16 17 N -0.68 -24.76 4.50 -439.28 -1.97 -26.74 16 18 C 0.56 20.84 7.82 86.95 0.68 21.52 16 19 O -0.56 -24.27 15.96 -3.69 -0.06 -24.33 16 20 C 0.13 3.90 6.75 42.30 0.29 4.19 16 21 C -0.15 -3.49 9.54 22.38 0.21 -3.28 16 22 C -0.01 -0.14 9.92 22.46 0.22 0.08 16 23 C -0.17 -3.06 5.75 -21.23 -0.12 -3.18 16 24 C 0.17 2.37 11.05 85.31 0.94 3.31 16 25 N -0.50 -8.57 10.30 -195.61 -2.02 -10.58 16 26 C 0.09 1.50 11.05 84.08 0.93 2.43 16 27 C -0.15 -2.92 10.08 22.43 0.23 -2.70 16 28 C 0.13 3.10 6.63 40.58 0.27 3.37 16 29 N -0.47 -13.48 9.50 -177.61 -1.69 -15.17 16 30 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.33 6.44 -2.39 -0.02 1.32 16 33 H 0.03 1.26 7.91 -2.38 -0.02 1.24 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.05 1.94 8.06 -2.39 -0.02 1.92 16 37 H 0.02 0.93 8.00 -2.39 -0.02 0.91 16 38 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.01 0.75 7.38 -2.39 -0.02 0.73 16 40 H 0.00 -0.12 7.41 -2.39 -0.02 -0.13 16 41 H 0.41 13.85 6.32 -92.71 -0.59 13.27 16 42 H 0.16 3.57 7.60 -2.91 -0.02 3.55 16 43 H 0.20 1.00 8.06 -2.91 -0.02 0.98 16 44 H 0.21 0.99 8.06 -2.91 -0.02 0.96 16 45 H 0.19 1.82 8.06 -2.91 -0.02 1.79 16 46 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -79.91 377.92 1.81 -78.10 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.42 Total: 20.45 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 7.21 Total: 23.59 kcal Atomic # 7 Polarization: -139.24 SS G_CDS: -7.79 Total: -147.04 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.06 Total: -24.33 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.22 kcal Total: -79.91 1.81 -78.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975098897.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.114 kcal (2) G-P(sol) polarization free energy of solvation -79.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds