Wall clock time and date at job start Tue Mar 31 2020 23:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 110.78115 * 2 1 4 4 C 1.54327 * 110.71838 * 236.75849 * 2 1 3 5 5 N 1.47018 * 107.26974 * 219.44251 * 4 2 1 6 6 C 1.36938 * 125.65002 * 178.98407 * 5 4 2 7 7 H 1.08003 * 119.99456 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00421 * 180.02562 * 6 5 4 9 9 N 1.31618 * 119.99897 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00183 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47192 * 60.00204 * 10 8 6 12 12 H 1.48507 * 109.47252 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47519 * 300.00343 * 10 8 6 14 14 C 1.47428 * 108.70361 * 358.94421 * 5 4 2 15 15 C 1.54910 * 104.83198 * 24.12888 * 14 5 4 16 16 H 1.09000 * 111.03504 * 204.90338 * 15 14 5 17 17 N 1.46490 * 111.00700 * 81.06374 * 15 14 5 18 18 C 1.34786 * 120.00045 * 92.80243 * 17 15 14 19 19 O 1.21546 * 119.99563 * 0.02562 * 18 17 15 20 20 C 1.47864 * 119.99777 * 179.97438 * 18 17 15 21 21 C 1.40613 * 119.75751 * 0.02562 * 20 18 17 22 22 C 1.35734 * 120.83588 * 180.02562 * 21 20 18 23 23 C 1.40703 * 120.08248 * 359.95623 * 22 21 20 24 24 N 1.33791 * 120.86124 * 180.02562 * 23 22 21 25 25 C 1.31334 * 119.76299 * 179.67088 * 24 23 22 26 26 C 1.39752 * 120.71302 * 0.61879 * 25 24 23 27 27 N 1.31283 * 120.66995 * 359.39675 * 26 25 24 28 28 C 1.33822 * 119.73911 * 0.27810 * 27 26 25 29 29 C 1.38419 * 119.74920 * 179.97438 * 20 18 17 30 30 H 1.09000 * 109.46880 * 296.76431 * 1 2 3 31 31 H 1.09003 * 109.46640 * 56.76296 * 1 2 3 32 32 H 1.08997 * 109.46944 * 176.76296 * 1 2 3 33 33 H 1.08998 * 109.47079 * 183.23867 * 3 2 1 34 34 H 1.09008 * 109.47083 * 303.23870 * 3 2 1 35 35 H 1.08998 * 109.47260 * 63.23563 * 3 2 1 36 36 H 1.09000 * 109.88247 * 338.86652 * 4 2 1 37 37 H 1.09006 * 109.87702 * 100.02827 * 4 2 1 38 38 H 0.96999 * 120.00407 * 179.97438 * 9 8 6 39 39 H 1.08997 * 110.36785 * 265.28733 * 14 5 4 40 40 H 1.09006 * 110.36437 * 142.96817 * 14 5 4 41 41 H 0.97001 * 120.00336 * 272.80582 * 17 15 14 42 42 H 1.07996 * 119.58342 * 0.02562 * 21 20 18 43 43 H 1.07996 * 119.95894 * 179.97438 * 22 21 20 44 44 H 1.08009 * 119.64571 * 180.29723 * 25 24 23 45 45 H 1.08002 * 119.66807 * 179.68064 * 26 25 24 46 46 H 1.07994 * 120.25197 * 0.03186 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0760 -0.7913 -1.2073 5 7 3.2445 -1.5507 -0.7390 6 6 4.0044 -2.3969 -1.5017 7 1 3.7617 -2.5501 -2.5429 8 6 5.0866 -3.0577 -0.9368 9 7 5.3820 -2.8713 0.3322 10 14 6.1235 -4.2113 -1.9775 11 1 6.7158 -3.4575 -3.1116 12 1 7.2103 -4.7869 -1.1451 13 1 5.2693 -5.3063 -2.5034 14 6 3.4633 -1.2498 0.6876 15 6 2.0789 -0.7955 1.2138 16 1 2.1843 -0.1520 2.0872 17 7 1.2271 -1.9487 1.5145 18 6 1.2025 -2.4617 2.7606 19 8 1.8868 -1.9671 3.6350 20 6 0.3423 -3.6254 3.0642 21 6 -0.4476 -4.1932 2.0488 22 6 -1.2456 -5.2613 2.3032 23 6 -1.2903 -5.8163 3.5954 24 7 -2.0708 -6.8693 3.8634 25 6 -2.0910 -7.3742 5.0757 26 6 -1.3148 -6.8154 6.0946 27 7 -0.5411 -5.7817 5.8568 28 6 -0.4984 -5.2533 4.6281 29 6 0.3214 -4.1485 4.3455 30 1 -0.3633 0.4628 0.9176 31 1 -0.3633 0.5633 -0.8596 32 1 -0.3633 -1.0260 -0.0580 33 1 3.1611 1.4061 -0.0581 34 1 1.6751 1.9700 -0.8596 35 1 1.7692 1.9343 0.9175 36 1 1.3129 -1.4758 -1.5776 37 1 2.3741 -0.1024 -1.9977 38 1 6.1380 -3.3333 0.7271 39 1 4.1931 -0.4479 0.7985 40 1 3.7961 -2.1426 1.2169 41 1 0.6808 -2.3432 0.8167 42 1 -0.4190 -3.7741 1.0539 43 1 -1.8467 -5.6858 1.5129 44 1 -2.7182 -8.2273 5.2887 45 1 -1.3482 -7.2409 7.0867 46 1 0.9298 -3.7096 5.1223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977579193.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:45 Heat of formation + Delta-G solvation = 65.224282 kcal Electronic energy + Delta-G solvation = -29539.583666 eV Core-core repulsion = 25623.218320 eV Total energy + Delta-G solvation = -3916.365345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.60069 -39.91489 -38.28146 -36.90879 -35.00821 -33.89479 -33.18426 -31.14157 -30.74228 -30.70998 -28.23195 -26.97460 -25.74378 -25.54883 -24.70845 -23.43981 -22.41074 -21.25497 -20.12614 -19.11295 -18.62829 -18.15259 -17.25620 -16.73725 -16.47057 -15.79728 -15.33817 -14.84782 -14.74563 -14.49935 -14.40523 -14.08754 -13.95562 -13.78854 -13.74769 -13.21239 -12.83844 -12.60756 -12.26591 -12.00287 -11.95435 -11.92105 -11.89632 -11.85433 -11.73672 -11.31528 -11.19310 -11.01346 -10.77839 -10.45600 -10.24727 -10.00750 -9.85116 -9.70775 -9.64259 -9.36253 -9.20841 -8.78378 -8.70168 -8.40305 -6.83507 -5.64638 -3.07913 -0.10360 0.22281 1.66118 2.26316 3.31002 3.39126 3.41821 3.43732 3.45801 3.77679 3.90790 3.93864 4.02226 4.47412 4.55169 4.62880 4.76287 4.84869 4.93635 4.99883 5.16010 5.21507 5.26265 5.48945 5.50700 5.60454 5.68282 5.76824 5.85505 5.86160 5.91674 5.99969 6.06968 6.08772 6.15920 6.22972 6.35499 6.39419 6.46903 6.57484 6.66682 6.69220 6.93885 6.99707 7.45415 7.45843 7.60208 7.82547 7.92887 8.36684 8.54747 9.20290 9.81938 10.45659 11.37931 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011044 B = 0.003417 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.719913 B = 8192.100427 C = 9521.452637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 C -0.128 4.128 4 C 0.142 3.858 5 N -0.601 5.601 6 C -0.227 4.227 7 H 0.076 0.924 8 C -0.007 4.007 9 N -0.917 5.917 10 Si 0.912 3.088 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.145 3.855 15 C 0.122 3.878 16 H 0.091 0.909 17 N -0.691 5.691 18 C 0.555 3.445 19 O -0.534 6.534 20 C -0.101 4.101 21 C -0.068 4.068 22 C -0.089 4.089 23 C 0.091 3.909 24 N -0.428 5.428 25 C 0.079 3.921 26 C 0.070 3.930 27 N -0.416 5.416 28 C 0.071 3.929 29 C -0.018 4.018 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.021 0.979 37 H 0.024 0.976 38 H 0.253 0.747 39 H 0.022 0.978 40 H 0.113 0.887 41 H 0.397 0.603 42 H 0.140 0.860 43 H 0.145 0.855 44 H 0.175 0.825 45 H 0.176 0.824 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.247 -2.886 6.938 18.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 C -0.186 4.186 4 C 0.016 3.984 5 N -0.327 5.327 6 C -0.355 4.355 7 H 0.094 0.906 8 C -0.203 4.203 9 N -0.565 5.565 10 Si 0.743 3.257 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.020 3.980 15 C 0.017 3.983 16 H 0.109 0.891 17 N -0.341 5.341 18 C 0.341 3.659 19 O -0.412 6.412 20 C -0.107 4.107 21 C -0.089 4.089 22 C -0.108 4.108 23 C -0.033 4.033 24 N -0.142 5.142 25 C -0.096 4.096 26 C -0.106 4.106 27 N -0.130 5.130 28 C -0.053 4.053 29 C -0.038 4.038 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.042 0.958 38 H 0.064 0.936 39 H 0.040 0.960 40 H 0.131 0.869 41 H 0.233 0.767 42 H 0.158 0.842 43 H 0.163 0.837 44 H 0.192 0.808 45 H 0.193 0.807 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -16.451 -2.470 7.395 18.205 hybrid contribution 0.356 -0.973 -0.934 1.395 sum -16.094 -3.443 6.461 17.681 Atomic orbital electron populations 1.21720 0.94599 1.01150 1.01377 1.21858 0.94849 0.95810 0.96358 1.21686 1.01953 0.94036 1.00926 1.21422 0.90295 0.92981 0.93684 1.44455 1.30672 1.50264 1.07305 1.18974 1.06544 1.17166 0.92836 0.90613 1.24780 0.98708 1.00531 0.96318 1.69779 1.29995 1.45937 1.10767 0.86202 0.79889 0.80648 0.79009 1.21240 1.21605 1.21237 1.22329 0.89109 1.01454 0.85139 1.22598 0.93220 0.85917 0.96541 0.89116 1.45697 1.45468 1.32839 1.10110 1.17947 0.81922 0.82912 0.83101 1.90777 1.42899 1.60982 1.46507 1.20165 0.98724 0.97719 0.94060 1.21116 0.93683 0.94903 0.99166 1.20653 0.99631 0.95871 0.94634 1.19654 0.94735 0.93624 0.95300 1.68714 1.16562 1.07995 1.20896 1.24120 0.97185 0.99257 0.89077 1.24083 0.92549 0.92669 1.01270 1.68679 1.16160 1.08588 1.19561 1.19446 0.98226 0.97418 0.90199 1.21232 0.94475 0.91597 0.96536 0.92763 0.92661 0.93053 0.91707 0.92675 0.93023 0.96086 0.95785 0.93602 0.95993 0.86917 0.76749 0.84216 0.83699 0.80771 0.80723 0.82682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 8.07 37.16 0.30 -1.34 16 2 C -0.09 -1.39 0.80 -152.67 -0.12 -1.51 16 3 C -0.13 -1.88 8.41 37.16 0.31 -1.57 16 4 C 0.14 2.74 6.41 -3.06 -0.02 2.72 16 5 N -0.60 -14.57 3.39 -170.07 -0.58 -15.15 16 6 C -0.23 -6.13 10.27 -15.06 -0.15 -6.29 16 7 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 9 N -0.92 -26.81 10.09 55.49 0.56 -26.25 16 10 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.15 3.47 5.27 -2.53 -0.01 3.46 16 15 C 0.12 2.28 2.67 -65.79 -0.18 2.10 16 16 H 0.09 1.73 7.44 -51.93 -0.39 1.34 16 17 N -0.69 -11.69 4.49 -52.67 -0.24 -11.92 16 18 C 0.56 9.89 7.77 -12.32 -0.10 9.79 16 19 O -0.53 -11.28 15.94 5.33 0.08 -11.20 16 20 C -0.10 -1.51 5.87 -105.00 -0.62 -2.13 16 21 C -0.07 -0.84 9.44 -39.58 -0.37 -1.21 16 22 C -0.09 -1.04 9.95 -39.55 -0.39 -1.43 16 23 C 0.09 1.18 6.59 -84.72 -0.56 0.63 16 24 N -0.43 -5.01 10.46 -10.74 -0.11 -5.12 16 25 C 0.08 0.67 11.21 -17.20 -0.19 0.48 16 26 C 0.07 0.62 11.22 -17.22 -0.19 0.42 16 27 N -0.42 -5.30 10.46 -10.81 -0.11 -5.42 16 28 C 0.07 0.98 6.58 -84.81 -0.56 0.43 16 29 C -0.02 -0.27 9.56 -38.69 -0.37 -0.64 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.60 6.48 -51.93 -0.34 0.26 16 33 H 0.06 1.08 7.57 -51.93 -0.39 0.69 16 34 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.02 0.39 7.76 -51.93 -0.40 -0.01 16 37 H 0.02 0.47 7.84 -51.93 -0.41 0.07 16 38 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.02 0.57 7.80 -51.93 -0.41 0.17 16 40 H 0.11 3.16 5.87 -51.93 -0.30 2.85 16 41 H 0.40 5.90 5.17 -40.82 -0.21 5.69 16 42 H 0.14 1.44 6.35 -52.49 -0.33 1.10 16 43 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 44 H 0.18 0.71 8.06 -52.48 -0.42 0.29 16 45 H 0.18 0.80 8.06 -52.49 -0.42 0.37 16 46 H 0.16 2.37 7.61 -52.49 -0.40 1.97 16 LS Contribution 374.06 15.07 5.64 5.64 Total: -1.00 -33.90 374.06 -9.19 -43.09 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.09 Total: 5.72 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -3.32 Total: 3.62 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: -0.48 Total: -63.86 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.20 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.90 -9.19 -43.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977579193.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.312 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds