Wall clock time and date at job start Tue Mar 31 2020 23:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 110.78115 * 2 1 4 4 C 1.54327 * 110.71838 * 236.75849 * 2 1 3 5 5 N 1.47018 * 107.26974 * 219.44251 * 4 2 1 6 6 C 1.36938 * 125.65002 * 178.98407 * 5 4 2 7 7 H 1.08003 * 119.99456 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00421 * 180.02562 * 6 5 4 9 9 N 1.31618 * 119.99897 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00183 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47192 * 60.00204 * 10 8 6 12 12 H 1.48507 * 109.47252 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47519 * 300.00343 * 10 8 6 14 14 C 1.47428 * 108.70361 * 358.94421 * 5 4 2 15 15 C 1.54910 * 104.83198 * 24.12888 * 14 5 4 16 16 H 1.09000 * 111.03504 * 204.90338 * 15 14 5 17 17 N 1.46490 * 111.00700 * 81.06374 * 15 14 5 18 18 C 1.34786 * 120.00045 * 92.80243 * 17 15 14 19 19 O 1.21546 * 119.99563 * 0.02562 * 18 17 15 20 20 C 1.47864 * 119.99777 * 179.97438 * 18 17 15 21 21 C 1.40613 * 119.75751 * 0.02562 * 20 18 17 22 22 C 1.35734 * 120.83588 * 180.02562 * 21 20 18 23 23 C 1.40703 * 120.08248 * 359.95623 * 22 21 20 24 24 N 1.33791 * 120.86124 * 180.02562 * 23 22 21 25 25 C 1.31334 * 119.76299 * 179.67088 * 24 23 22 26 26 C 1.39752 * 120.71302 * 0.61879 * 25 24 23 27 27 N 1.31283 * 120.66995 * 359.39675 * 26 25 24 28 28 C 1.33822 * 119.73911 * 0.27810 * 27 26 25 29 29 C 1.38419 * 119.74920 * 179.97438 * 20 18 17 30 30 H 1.09000 * 109.46880 * 296.76431 * 1 2 3 31 31 H 1.09003 * 109.46640 * 56.76296 * 1 2 3 32 32 H 1.08997 * 109.46944 * 176.76296 * 1 2 3 33 33 H 1.08998 * 109.47079 * 183.23867 * 3 2 1 34 34 H 1.09008 * 109.47083 * 303.23870 * 3 2 1 35 35 H 1.08998 * 109.47260 * 63.23563 * 3 2 1 36 36 H 1.09000 * 109.88247 * 338.86652 * 4 2 1 37 37 H 1.09006 * 109.87702 * 100.02827 * 4 2 1 38 38 H 0.96999 * 120.00407 * 179.97438 * 9 8 6 39 39 H 1.08997 * 110.36785 * 265.28733 * 14 5 4 40 40 H 1.09006 * 110.36437 * 142.96817 * 14 5 4 41 41 H 0.97001 * 120.00336 * 272.80582 * 17 15 14 42 42 H 1.07996 * 119.58342 * 0.02562 * 21 20 18 43 43 H 1.07996 * 119.95894 * 179.97438 * 22 21 20 44 44 H 1.08009 * 119.64571 * 180.29723 * 25 24 23 45 45 H 1.08002 * 119.66807 * 179.68064 * 26 25 24 46 46 H 1.07994 * 120.25197 * 0.03186 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0760 -0.7913 -1.2073 5 7 3.2445 -1.5507 -0.7390 6 6 4.0044 -2.3969 -1.5017 7 1 3.7617 -2.5501 -2.5429 8 6 5.0866 -3.0577 -0.9368 9 7 5.3820 -2.8713 0.3322 10 14 6.1235 -4.2113 -1.9775 11 1 6.7158 -3.4575 -3.1116 12 1 7.2103 -4.7869 -1.1451 13 1 5.2693 -5.3063 -2.5034 14 6 3.4633 -1.2498 0.6876 15 6 2.0789 -0.7955 1.2138 16 1 2.1843 -0.1520 2.0872 17 7 1.2271 -1.9487 1.5145 18 6 1.2025 -2.4617 2.7606 19 8 1.8868 -1.9671 3.6350 20 6 0.3423 -3.6254 3.0642 21 6 -0.4476 -4.1932 2.0488 22 6 -1.2456 -5.2613 2.3032 23 6 -1.2903 -5.8163 3.5954 24 7 -2.0708 -6.8693 3.8634 25 6 -2.0910 -7.3742 5.0757 26 6 -1.3148 -6.8154 6.0946 27 7 -0.5411 -5.7817 5.8568 28 6 -0.4984 -5.2533 4.6281 29 6 0.3214 -4.1485 4.3455 30 1 -0.3633 0.4628 0.9176 31 1 -0.3633 0.5633 -0.8596 32 1 -0.3633 -1.0260 -0.0580 33 1 3.1611 1.4061 -0.0581 34 1 1.6751 1.9700 -0.8596 35 1 1.7692 1.9343 0.9175 36 1 1.3129 -1.4758 -1.5776 37 1 2.3741 -0.1024 -1.9977 38 1 6.1380 -3.3333 0.7271 39 1 4.1931 -0.4479 0.7985 40 1 3.7961 -2.1426 1.2169 41 1 0.6808 -2.3432 0.8167 42 1 -0.4190 -3.7741 1.0539 43 1 -1.8467 -5.6858 1.5129 44 1 -2.7182 -8.2273 5.2887 45 1 -1.3482 -7.2409 7.0867 46 1 0.9298 -3.7096 5.1223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977579193.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:44 Heat of formation + Delta-G solvation = 41.736436 kcal Electronic energy + Delta-G solvation = -29540.602175 eV Core-core repulsion = 25623.218320 eV Total energy + Delta-G solvation = -3917.383855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.49644 -41.32121 -39.68514 -38.02730 -35.88563 -35.68479 -34.65042 -32.59749 -32.10638 -31.71069 -29.82486 -28.11732 -27.44258 -26.69286 -25.62753 -24.97640 -23.49342 -22.61434 -21.79347 -20.46025 -19.63573 -19.28162 -18.69932 -18.19464 -17.64830 -17.13009 -16.63944 -16.29534 -15.87165 -15.73183 -15.67666 -15.43920 -15.31086 -15.05955 -14.86650 -14.64209 -14.21563 -13.74028 -13.68492 -13.58737 -13.04288 -12.99762 -12.95955 -12.86501 -12.84063 -12.77760 -12.75118 -12.60702 -12.54985 -12.16110 -11.79013 -11.76144 -11.47228 -11.35683 -11.12589 -10.74796 -10.18743 -10.18591 -9.96908 -9.72754 -8.83888 -7.74888 -5.19764 -1.03589 -0.64932 0.70253 1.28409 1.44613 1.47301 1.53901 2.01414 2.22573 2.49307 2.92180 2.97386 3.09339 3.17655 3.34937 3.52824 3.57270 3.70312 3.75907 3.86266 3.97422 3.98041 4.07302 4.11844 4.41906 4.42297 4.51469 4.61778 4.69348 4.75597 4.84530 4.88425 4.91175 4.94295 5.02150 5.04172 5.11303 5.15035 5.21303 5.28876 5.34880 5.48013 5.49952 5.54191 5.66511 5.82900 6.18590 6.31418 6.51014 6.64714 7.09785 7.16137 7.80303 8.43791 9.25363 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011044 B = 0.003417 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.719913 B = 8192.100427 C = 9521.452637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.137 3.863 5 N -0.617 5.617 6 C -0.231 4.231 7 H 0.086 0.914 8 C -0.067 4.067 9 N -0.949 5.949 10 Si 0.975 3.025 11 H -0.278 1.278 12 H -0.301 1.301 13 H -0.274 1.274 14 C 0.153 3.847 15 C 0.134 3.866 16 H 0.083 0.917 17 N -0.682 5.682 18 C 0.553 3.447 19 O -0.578 6.578 20 C -0.115 4.115 21 C -0.071 4.071 22 C -0.079 4.079 23 C 0.077 3.923 24 N -0.447 5.447 25 C 0.098 3.902 26 C 0.086 3.914 27 N -0.453 5.453 28 C 0.050 3.950 29 C -0.031 4.031 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.033 0.967 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.039 0.961 37 H 0.026 0.974 38 H 0.242 0.758 39 H -0.013 1.013 40 H 0.068 0.932 41 H 0.408 0.592 42 H 0.160 0.840 43 H 0.172 0.828 44 H 0.226 0.774 45 H 0.222 0.778 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.978 -4.490 6.032 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.074 4.074 3 C -0.184 4.184 4 C 0.012 3.988 5 N -0.343 5.343 6 C -0.360 4.360 7 H 0.103 0.897 8 C -0.260 4.260 9 N -0.599 5.599 10 Si 0.804 3.196 11 H -0.204 1.204 12 H -0.228 1.228 13 H -0.200 1.200 14 C 0.027 3.973 15 C 0.028 3.972 16 H 0.101 0.899 17 N -0.332 5.332 18 C 0.340 3.660 19 O -0.459 6.459 20 C -0.120 4.120 21 C -0.091 4.091 22 C -0.098 4.098 23 C -0.046 4.046 24 N -0.161 5.161 25 C -0.079 4.079 26 C -0.091 4.091 27 N -0.168 5.168 28 C -0.072 4.072 29 C -0.052 4.052 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.044 0.956 38 H 0.051 0.949 39 H 0.005 0.995 40 H 0.086 0.914 41 H 0.247 0.753 42 H 0.177 0.823 43 H 0.189 0.811 44 H 0.243 0.757 45 H 0.238 0.762 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.224 -4.038 6.413 21.598 hybrid contribution 1.424 -0.624 -0.503 1.634 sum -18.801 -4.662 5.910 20.252 Atomic orbital electron populations 1.21706 0.91009 1.02489 1.03078 1.21840 0.97494 0.95391 0.92699 1.21695 1.00041 0.93679 1.03030 1.21674 0.88887 0.93162 0.95062 1.44670 1.31814 1.50461 1.07340 1.19405 1.06480 1.16699 0.93464 0.89653 1.25592 1.00402 1.02652 0.97335 1.70100 1.30150 1.47162 1.12487 0.85199 0.78065 0.78957 0.77406 1.20393 1.22796 1.20028 1.21958 0.91617 0.98329 0.85407 1.22260 0.91035 0.86560 0.97339 0.89863 1.45555 1.44918 1.32403 1.10298 1.18464 0.81530 0.83222 0.82735 1.90742 1.44881 1.62510 1.47810 1.19940 0.99678 0.97335 0.95050 1.21207 0.93463 0.95291 0.99143 1.20940 0.98949 0.95026 0.94915 1.19851 0.94936 0.94278 0.95492 1.68818 1.16840 1.07880 1.22612 1.25041 0.95934 0.99221 0.87671 1.24980 0.90160 0.90637 1.03371 1.68691 1.18201 1.10594 1.19279 1.19416 0.98843 0.97588 0.91358 1.21153 0.95144 0.92660 0.96244 0.91697 0.90251 0.92066 0.94764 0.90080 0.91334 0.94280 0.95553 0.94866 0.99507 0.91380 0.75318 0.82261 0.81101 0.75731 0.76211 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 8.07 71.98 0.58 -2.13 16 2 C -0.07 -2.23 0.80 -50.99 -0.04 -2.27 16 3 C -0.13 -3.56 8.41 71.98 0.61 -2.96 16 4 C 0.14 5.12 6.41 86.73 0.56 5.67 16 5 N -0.62 -30.60 3.39 -691.97 -2.35 -32.95 16 6 C -0.23 -12.69 10.27 84.03 0.86 -11.83 16 7 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 8 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 9 N -0.95 -58.69 10.09 21.65 0.22 -58.47 16 10 Si 0.97 46.28 29.55 68.60 2.03 48.31 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 14 C 0.15 7.79 5.27 86.85 0.46 8.24 16 15 C 0.13 5.15 2.67 46.39 0.12 5.28 16 16 H 0.08 3.34 7.44 -2.39 -0.02 3.32 16 17 N -0.68 -23.51 4.49 -438.82 -1.97 -25.49 16 18 C 0.55 20.81 7.77 86.79 0.67 21.48 16 19 O -0.58 -26.46 15.94 -3.86 -0.06 -26.52 16 20 C -0.12 -3.59 5.87 -20.11 -0.12 -3.71 16 21 C -0.07 -1.70 9.44 22.27 0.21 -1.49 16 22 C -0.08 -1.74 9.95 22.29 0.22 -1.52 16 23 C 0.08 1.91 6.59 40.33 0.27 2.17 16 24 N -0.45 -9.18 10.46 -187.88 -1.96 -11.15 16 25 C 0.10 1.24 11.21 85.13 0.95 2.20 16 26 C 0.09 1.22 11.22 85.14 0.95 2.18 16 27 N -0.45 -11.23 10.46 -188.11 -1.97 -13.19 16 28 C 0.05 1.40 6.58 40.26 0.27 1.66 16 29 C -0.03 -1.00 9.56 22.85 0.22 -0.78 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.22 6.48 -2.39 -0.02 1.20 16 33 H 0.03 1.16 7.57 -2.39 -0.02 1.14 16 34 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.04 1.35 7.76 -2.39 -0.02 1.33 16 37 H 0.03 0.99 7.84 -2.38 -0.02 0.97 16 38 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 39 H -0.01 -0.72 7.80 -2.39 -0.02 -0.74 16 40 H 0.07 4.11 5.87 -2.38 -0.01 4.10 16 41 H 0.41 11.85 5.17 -92.71 -0.48 11.37 16 42 H 0.16 3.02 6.35 -2.91 -0.02 3.00 16 43 H 0.17 2.76 8.06 -2.91 -0.02 2.73 16 44 H 0.23 0.44 8.06 -2.91 -0.02 0.42 16 45 H 0.22 0.93 8.06 -2.91 -0.02 0.91 16 46 H 0.14 4.66 7.61 -2.91 -0.02 4.64 16 Total: -1.00 -81.02 374.06 1.73 -79.29 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.54 Total: 21.36 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 7.26 Total: 18.81 kcal Atomic # 7 Polarization: -133.21 SS G_CDS: -8.03 Total: -141.25 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.06 Total: -26.52 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -81.02 1.73 -79.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977579193.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.031 kcal (2) G-P(sol) polarization free energy of solvation -81.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds