Wall clock time and date at job start Tue Mar 31 2020 23:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40185 * 120.19099 * 2 1 4 4 C 1.35257 * 120.12283 * 180.02562 * 3 2 1 5 5 N 1.35956 * 120.64211 * 359.96220 * 4 3 2 6 6 C 1.38288 * 132.40054 * 180.02562 * 5 4 3 7 7 C 1.41817 * 126.78689 * 359.74063 * 6 5 4 8 8 O 1.21777 * 119.99473 * 354.80157 * 7 6 5 9 9 N 1.34769 * 120.00193 * 174.79788 * 7 6 5 10 10 C 1.46500 * 120.00193 * 184.97867 * 9 7 6 11 11 C 1.52996 * 109.47520 * 179.97438 * 10 9 7 12 12 H 1.09004 * 115.51574 * 29.58953 * 11 10 9 13 13 C 1.52996 * 117.44878 * 244.24243 * 11 10 9 14 14 H 1.08999 * 119.53819 * 4.11500 * 13 11 10 15 15 C 1.57687 * 116.11475 * 161.63688 * 13 11 10 16 16 N 1.48149 * 104.67614 * 87.30895 * 15 13 11 17 17 C 1.36934 * 127.84011 * 139.77397 * 16 15 13 18 18 H 1.07999 * 120.00205 * 344.32623 * 17 16 15 19 19 C 1.38811 * 120.00052 * 164.33155 * 17 16 15 20 20 N 1.31620 * 119.99869 * 351.12367 * 19 17 16 21 21 Si 1.86795 * 120.00096 * 171.12592 * 19 17 16 22 22 H 1.48499 * 109.47164 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47267 * 119.99668 * 21 19 17 24 24 H 1.48495 * 109.47382 * 239.99788 * 21 19 17 25 25 C 1.48149 * 104.32217 * 319.77645 * 16 15 13 26 26 C 1.53001 * 117.44531 * 174.99862 * 11 10 9 27 27 H 1.08997 * 119.53652 * 355.88655 * 26 11 10 28 28 C 1.38527 * 106.42832 * 179.97438 * 6 5 4 29 29 N 1.32332 * 108.21537 * 0.02562 * 28 6 5 30 30 C 1.33199 * 109.81160 * 359.97438 * 29 28 6 31 31 C 1.36277 * 120.20034 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.46543 * 269.97307 * 1 2 3 33 33 H 1.08995 * 109.47385 * 29.97353 * 1 2 3 34 34 H 1.09000 * 109.46457 * 149.97468 * 1 2 3 35 35 H 1.08000 * 119.94054 * 0.02562 * 3 2 1 36 36 H 1.08000 * 119.67881 * 180.02562 * 4 3 2 37 37 H 0.97007 * 120.00481 * 4.97742 * 9 7 6 38 38 H 1.08996 * 109.47176 * 300.00329 * 10 9 7 39 39 H 1.09008 * 109.47194 * 60.00208 * 10 9 7 40 40 H 1.09000 * 110.92489 * 328.23125 * 15 13 11 41 41 H 1.09006 * 109.93863 * 205.89091 * 15 13 11 42 42 H 0.96996 * 119.99743 * 180.02562 * 20 19 17 43 43 H 1.08997 * 110.40438 * 280.79932 * 25 16 15 44 44 H 1.08996 * 110.40926 * 158.36806 * 25 16 15 45 45 H 1.08000 * 125.89165 * 179.97438 * 28 6 5 46 46 H 1.08002 * 120.30318 * 359.94618 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2120 1.2117 0.0000 4 6 3.5646 1.2101 -0.0005 5 7 4.2561 0.0395 -0.0003 6 6 5.6097 -0.2439 -0.0002 7 6 6.6737 0.6937 -0.0056 8 8 6.4359 1.8838 -0.1064 9 7 7.9478 0.2677 0.1010 10 6 9.0389 1.2397 0.2054 11 6 10.3731 0.4990 0.3148 12 1 10.4129 -0.4722 -0.1785 13 6 11.1661 0.6624 1.6130 14 1 10.7376 1.2343 2.4361 15 6 12.2743 -0.4244 1.8909 16 7 13.4848 0.0913 1.2102 17 6 14.7787 0.0573 1.6571 18 1 14.9855 -0.1462 2.6974 19 6 15.8246 0.2845 0.7732 20 7 15.5892 0.3587 -0.5197 21 14 17.5661 0.4847 1.4184 22 1 17.5630 0.3605 2.8982 23 1 18.4345 -0.5689 0.8346 24 1 18.0851 1.8223 1.0356 25 6 12.9779 0.6523 -0.0639 26 6 11.6498 1.3423 0.3153 27 1 11.5816 2.4206 0.1716 28 6 5.7208 -1.6247 0.0007 29 7 4.5010 -2.1379 0.0005 30 6 3.5989 -1.1578 0.0002 31 6 2.1926 -1.1778 -0.0005 32 1 -0.3632 -0.0005 1.0277 33 1 -0.3634 0.8902 -0.5134 34 1 -0.3632 -0.8898 -0.5142 35 1 1.6742 2.1482 0.0004 36 1 4.1005 2.1478 -0.0001 37 1 8.1425 -0.6826 0.1087 38 1 9.0466 1.8739 -0.6811 39 1 8.8925 1.8566 1.0921 40 1 11.9861 -1.3896 1.4743 41 1 12.4492 -0.5112 2.9633 42 1 16.3200 0.5171 -1.1374 43 1 12.7996 -0.1447 -0.7857 44 1 13.6829 1.3798 -0.4660 45 1 6.6437 -2.1856 0.0005 46 1 1.6608 -2.1178 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978190292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:11 Heat of formation + Delta-G solvation = 112.463986 kcal Electronic energy + Delta-G solvation = -27734.656318 eV Core-core repulsion = 23820.339440 eV Total energy + Delta-G solvation = -3914.316878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.28424 -39.75888 -38.63210 -38.12316 -35.20529 -34.47533 -33.40649 -31.53287 -30.74822 -30.41160 -28.37414 -27.03957 -26.65202 -24.91109 -24.10488 -23.43396 -21.82980 -21.11915 -20.91239 -20.01328 -19.29202 -18.43754 -17.32140 -16.89318 -16.74898 -16.58409 -15.87481 -15.52203 -15.14577 -14.96517 -14.83002 -14.39947 -14.24947 -14.03437 -13.87672 -13.56258 -13.12332 -13.04631 -12.80269 -12.66654 -12.61447 -12.25562 -12.16502 -11.88425 -11.26248 -11.10797 -11.02373 -10.85830 -10.76936 -10.63000 -10.28804 -10.15572 -10.10353 -9.75437 -9.48350 -9.32776 -9.17710 -9.02160 -8.65268 -8.21419 -6.88171 -5.81382 -3.15772 0.28739 0.40703 1.93528 1.99277 3.03622 3.15011 3.21102 3.36988 3.43143 3.45548 3.67128 4.06972 4.14676 4.20414 4.32120 4.45099 4.58788 4.65072 4.78308 4.87525 4.95761 5.02885 5.10807 5.23149 5.28116 5.38347 5.41213 5.43200 5.48779 5.52735 5.75347 5.77010 5.78195 5.88650 5.92930 6.02376 6.05278 6.22163 6.29738 6.52904 6.53834 6.64995 6.68275 6.89342 7.26849 7.34541 7.39722 7.52340 7.70964 8.01798 8.19553 9.09683 9.72448 10.49367 11.32978 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.039923 B = 0.001706 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.180703 B =16411.324774 C =16737.409631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.053 4.053 3 C -0.145 4.145 4 C 0.081 3.919 5 N -0.325 5.325 6 C -0.146 4.146 7 C 0.597 3.403 8 O -0.559 6.559 9 N -0.711 5.711 10 C 0.158 3.842 11 C -0.154 4.154 12 H 0.104 0.896 13 C -0.171 4.171 14 H 0.107 0.893 15 C 0.156 3.844 16 N -0.595 5.595 17 C -0.227 4.227 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.915 5.915 21 Si 0.913 3.087 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.183 3.817 26 C -0.161 4.161 27 H 0.102 0.898 28 C 0.110 3.890 29 N -0.496 5.496 30 C 0.248 3.752 31 C -0.097 4.097 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.156 0.844 36 H 0.178 0.822 37 H 0.403 0.597 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.048 0.952 42 H 0.254 0.746 43 H 0.024 0.976 44 H 0.090 0.910 45 H 0.193 0.807 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.571 -0.384 0.180 30.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.060 4.060 3 C -0.165 4.165 4 C -0.044 4.044 5 N 0.006 4.994 6 C -0.259 4.259 7 C 0.386 3.614 8 O -0.440 6.440 9 N -0.362 5.362 10 C 0.035 3.965 11 C -0.173 4.173 12 H 0.122 0.878 13 C -0.191 4.191 14 H 0.125 0.875 15 C 0.029 3.971 16 N -0.318 5.318 17 C -0.355 4.355 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.562 5.562 21 Si 0.743 3.257 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.058 3.942 26 C -0.182 4.182 27 H 0.120 0.880 28 C -0.050 4.050 29 N -0.215 5.215 30 C 0.008 3.992 31 C -0.117 4.117 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.174 0.826 36 H 0.195 0.805 37 H 0.238 0.762 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.042 0.958 44 H 0.108 0.892 45 H 0.210 0.790 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -30.546 -0.294 0.069 30.548 hybrid contribution 1.272 0.573 0.245 1.416 sum -29.275 0.279 0.314 29.278 Atomic orbital electron populations 1.20815 0.89269 1.03710 1.03191 1.19901 0.97338 0.91976 0.96760 1.20885 0.91902 0.99594 1.04135 1.22074 0.93019 0.89703 0.99586 1.42417 1.06438 1.07678 1.42908 1.19846 0.82709 0.96259 1.27129 1.15371 0.82116 0.86917 0.77014 1.90807 1.84514 1.16971 1.51723 1.45661 1.05237 1.10976 1.74345 1.20902 0.83154 0.90316 1.02080 1.22549 0.90937 1.01152 1.02703 0.87781 1.24717 1.00490 1.03262 0.90658 0.87523 1.21719 0.86277 0.92546 0.96560 1.45155 1.01743 1.66311 1.18563 1.19042 0.80236 1.42985 0.93239 0.90521 1.24898 0.98034 1.02145 0.95200 1.69903 1.30859 1.54752 1.00645 0.86042 0.84231 0.77428 0.78029 1.20353 1.21675 1.21614 1.21090 0.88900 0.96032 0.88220 1.24185 0.94071 0.98137 1.01793 0.88020 1.23246 0.96732 0.89339 0.95722 1.70531 0.99011 1.28676 1.23277 1.21083 0.94546 0.80240 1.03340 1.20158 0.87972 0.99903 1.03673 0.90218 0.90699 0.90692 0.82650 0.80453 0.76171 0.90874 0.91337 0.95490 0.93333 0.93591 0.95812 0.89192 0.79038 0.82728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.33 10.02 36.01 0.36 0.03 16 2 C -0.05 -0.32 5.88 -104.59 -0.62 -0.94 16 3 C -0.14 -0.93 9.68 -39.91 -0.39 -1.31 16 4 C 0.08 0.76 10.51 -16.79 -0.18 0.58 16 5 N -0.33 -3.76 2.96 -60.15 -0.18 -3.94 16 6 C -0.15 -1.77 6.83 -83.48 -0.57 -2.34 16 7 C 0.60 7.94 7.59 -14.89 -0.11 7.82 16 8 O -0.56 -8.95 15.37 5.12 0.08 -8.87 16 9 N -0.71 -8.27 5.53 -63.16 -0.35 -8.62 16 10 C 0.16 2.08 5.96 -4.04 -0.02 2.06 16 11 C -0.15 -2.28 5.34 -90.62 -0.48 -2.77 16 12 H 0.10 1.52 8.04 -51.93 -0.42 1.10 16 13 C -0.17 -2.92 7.03 -87.39 -0.61 -3.54 16 14 H 0.11 1.68 8.12 -51.93 -0.42 1.26 16 15 C 0.16 3.18 7.10 -0.57 0.00 3.17 16 16 N -0.59 -15.05 3.38 -166.73 -0.56 -15.61 16 17 C -0.23 -6.28 10.35 -15.06 -0.16 -6.44 16 18 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 19 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 20 N -0.92 -26.63 10.86 55.49 0.60 -26.03 16 21 Si 0.91 21.83 29.56 -169.99 -5.03 16.81 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 25 C 0.18 4.32 5.70 -2.41 -0.01 4.31 16 26 C -0.16 -2.98 6.77 -89.22 -0.60 -3.58 16 27 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 28 C 0.11 1.19 11.32 -17.23 -0.20 0.99 16 29 N -0.50 -6.04 11.25 -12.27 -0.14 -6.18 16 30 C 0.25 2.77 7.77 -156.06 -1.21 1.56 16 31 C -0.10 -0.77 9.75 -39.38 -0.38 -1.16 16 32 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 33 H 0.07 0.14 8.09 -51.93 -0.42 -0.28 16 34 H 0.07 0.17 8.08 -51.93 -0.42 -0.25 16 35 H 0.16 0.52 8.06 -52.49 -0.42 0.10 16 36 H 0.18 1.69 6.81 -52.49 -0.36 1.34 16 37 H 0.40 3.71 7.20 -40.82 -0.29 3.42 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 0.94 7.94 -51.92 -0.41 0.52 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 2.39 6.51 -51.93 -0.34 2.05 16 45 H 0.19 1.39 7.38 -52.49 -0.39 1.00 16 46 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 382.53 15.07 5.76 5.76 Total: -1.00 -34.45 382.53 -11.49 -45.94 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.40 Total: 2.52 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -5.29 Total: -1.78 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -0.63 Total: -60.38 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.08 Total: -8.87 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.45 -11.49 -45.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978190292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.402 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds