Wall clock time and date at job start Tue Mar 31 2020 23:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40185 * 120.19099 * 2 1 4 4 C 1.35257 * 120.12283 * 180.02562 * 3 2 1 5 5 N 1.35956 * 120.64211 * 359.96220 * 4 3 2 6 6 C 1.38288 * 132.40054 * 180.02562 * 5 4 3 7 7 C 1.41817 * 126.78689 * 359.74063 * 6 5 4 8 8 O 1.21777 * 119.99473 * 354.80157 * 7 6 5 9 9 N 1.34769 * 120.00193 * 174.79788 * 7 6 5 10 10 C 1.46500 * 120.00193 * 184.97867 * 9 7 6 11 11 C 1.52996 * 109.47520 * 179.97438 * 10 9 7 12 12 H 1.09004 * 115.51574 * 29.58953 * 11 10 9 13 13 C 1.52996 * 117.44878 * 244.24243 * 11 10 9 14 14 H 1.08999 * 119.53819 * 4.11500 * 13 11 10 15 15 C 1.57687 * 116.11475 * 161.63688 * 13 11 10 16 16 N 1.48149 * 104.67614 * 87.30895 * 15 13 11 17 17 C 1.36934 * 127.84011 * 139.77397 * 16 15 13 18 18 H 1.07999 * 120.00205 * 344.32623 * 17 16 15 19 19 C 1.38811 * 120.00052 * 164.33155 * 17 16 15 20 20 N 1.31620 * 119.99869 * 351.12367 * 19 17 16 21 21 Si 1.86795 * 120.00096 * 171.12592 * 19 17 16 22 22 H 1.48499 * 109.47164 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47267 * 119.99668 * 21 19 17 24 24 H 1.48495 * 109.47382 * 239.99788 * 21 19 17 25 25 C 1.48149 * 104.32217 * 319.77645 * 16 15 13 26 26 C 1.53001 * 117.44531 * 174.99862 * 11 10 9 27 27 H 1.08997 * 119.53652 * 355.88655 * 26 11 10 28 28 C 1.38527 * 106.42832 * 179.97438 * 6 5 4 29 29 N 1.32332 * 108.21537 * 0.02562 * 28 6 5 30 30 C 1.33199 * 109.81160 * 359.97438 * 29 28 6 31 31 C 1.36277 * 120.20034 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.46543 * 269.97307 * 1 2 3 33 33 H 1.08995 * 109.47385 * 29.97353 * 1 2 3 34 34 H 1.09000 * 109.46457 * 149.97468 * 1 2 3 35 35 H 1.08000 * 119.94054 * 0.02562 * 3 2 1 36 36 H 1.08000 * 119.67881 * 180.02562 * 4 3 2 37 37 H 0.97007 * 120.00481 * 4.97742 * 9 7 6 38 38 H 1.08996 * 109.47176 * 300.00329 * 10 9 7 39 39 H 1.09008 * 109.47194 * 60.00208 * 10 9 7 40 40 H 1.09000 * 110.92489 * 328.23125 * 15 13 11 41 41 H 1.09006 * 109.93863 * 205.89091 * 15 13 11 42 42 H 0.96996 * 119.99743 * 180.02562 * 20 19 17 43 43 H 1.08997 * 110.40438 * 280.79932 * 25 16 15 44 44 H 1.08996 * 110.40926 * 158.36806 * 25 16 15 45 45 H 1.08000 * 125.89165 * 179.97438 * 28 6 5 46 46 H 1.08002 * 120.30318 * 359.94618 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2120 1.2117 0.0000 4 6 3.5646 1.2101 -0.0005 5 7 4.2561 0.0395 -0.0003 6 6 5.6097 -0.2439 -0.0002 7 6 6.6737 0.6937 -0.0056 8 8 6.4359 1.8838 -0.1064 9 7 7.9478 0.2677 0.1010 10 6 9.0389 1.2397 0.2054 11 6 10.3731 0.4990 0.3148 12 1 10.4129 -0.4722 -0.1785 13 6 11.1661 0.6624 1.6130 14 1 10.7376 1.2343 2.4361 15 6 12.2743 -0.4244 1.8909 16 7 13.4848 0.0913 1.2102 17 6 14.7787 0.0573 1.6571 18 1 14.9855 -0.1462 2.6974 19 6 15.8246 0.2845 0.7732 20 7 15.5892 0.3587 -0.5197 21 14 17.5661 0.4847 1.4184 22 1 17.5630 0.3605 2.8982 23 1 18.4345 -0.5689 0.8346 24 1 18.0851 1.8223 1.0356 25 6 12.9779 0.6523 -0.0639 26 6 11.6498 1.3423 0.3153 27 1 11.5816 2.4206 0.1716 28 6 5.7208 -1.6247 0.0007 29 7 4.5010 -2.1379 0.0005 30 6 3.5989 -1.1578 0.0002 31 6 2.1926 -1.1778 -0.0005 32 1 -0.3632 -0.0005 1.0277 33 1 -0.3634 0.8902 -0.5134 34 1 -0.3632 -0.8898 -0.5142 35 1 1.6742 2.1482 0.0004 36 1 4.1005 2.1478 -0.0001 37 1 8.1425 -0.6826 0.1087 38 1 9.0466 1.8739 -0.6811 39 1 8.8925 1.8566 1.0921 40 1 11.9861 -1.3896 1.4743 41 1 12.4492 -0.5112 2.9633 42 1 16.3200 0.5171 -1.1374 43 1 12.7996 -0.1447 -0.7857 44 1 13.6829 1.3798 -0.4660 45 1 6.6437 -2.1856 0.0005 46 1 1.6608 -2.1178 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978190292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:10 Heat of formation + Delta-G solvation = 91.782401 kcal Electronic energy + Delta-G solvation = -27735.553138 eV Core-core repulsion = 23820.339440 eV Total energy + Delta-G solvation = -3915.213699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.02195 -40.85496 -40.04214 -38.78806 -36.43411 -35.32099 -34.93758 -32.88110 -31.94892 -31.07415 -29.35236 -28.71664 -27.88527 -26.39392 -24.74729 -24.35181 -22.84769 -22.42245 -21.94889 -21.28132 -20.84175 -19.34346 -18.79930 -17.97257 -17.68252 -17.39243 -17.00617 -16.63543 -16.16009 -16.12510 -15.89518 -15.63235 -15.31271 -15.08105 -14.82125 -14.59629 -14.43841 -14.30600 -14.09889 -13.49015 -13.36017 -13.17766 -13.02709 -12.88236 -12.87288 -12.73658 -12.69436 -12.28175 -11.94690 -11.87294 -11.76277 -11.62644 -11.59662 -11.15111 -10.94139 -10.72061 -10.56662 -10.17249 -9.98818 -8.94546 -8.89952 -7.91849 -5.27896 -0.38099 -0.27088 1.17882 1.24452 1.46389 1.47166 1.57995 2.21033 2.26376 2.39006 2.47638 2.77426 3.04103 3.26402 3.41371 3.62118 3.65283 3.71432 3.73396 3.82504 3.87912 4.04918 4.17586 4.26220 4.27654 4.34408 4.37458 4.57325 4.62862 4.69322 4.74944 4.76041 4.85649 4.92382 4.93674 5.03508 5.17616 5.19658 5.24715 5.34523 5.36797 5.42379 5.45931 5.50148 5.54236 5.67871 5.84447 6.18666 6.39130 6.58174 7.01661 7.07034 7.68897 8.47197 9.22078 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.039923 B = 0.001706 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.180703 B =16411.324774 C =16737.409631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.038 4.038 3 C -0.124 4.124 4 C 0.049 3.951 5 N -0.333 5.333 6 C -0.179 4.179 7 C 0.600 3.400 8 O -0.594 6.594 9 N -0.702 5.702 10 C 0.169 3.831 11 C -0.114 4.114 12 H 0.112 0.888 13 C -0.157 4.157 14 H 0.129 0.871 15 C 0.149 3.851 16 N -0.621 5.621 17 C -0.240 4.240 18 H 0.081 0.919 19 C -0.063 4.063 20 N -0.947 5.947 21 Si 0.979 3.021 22 H -0.265 1.265 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.189 3.811 26 C -0.177 4.177 27 H 0.111 0.889 28 C 0.118 3.882 29 N -0.526 5.526 30 C 0.234 3.766 31 C -0.112 4.112 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.191 0.809 36 H 0.169 0.831 37 H 0.416 0.584 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.033 0.967 41 H 0.054 0.946 42 H 0.249 0.751 43 H 0.003 0.997 44 H 0.051 0.949 45 H 0.220 0.780 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.613 -0.431 1.188 33.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.045 4.045 3 C -0.144 4.144 4 C -0.075 4.075 5 N -0.002 5.002 6 C -0.292 4.292 7 C 0.390 3.610 8 O -0.477 6.477 9 N -0.354 5.354 10 C 0.045 3.955 11 C -0.133 4.133 12 H 0.130 0.870 13 C -0.177 4.177 14 H 0.147 0.853 15 C 0.023 3.977 16 N -0.345 5.345 17 C -0.368 4.368 18 H 0.098 0.902 19 C -0.256 4.256 20 N -0.595 5.595 21 Si 0.807 3.193 22 H -0.189 1.189 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.063 3.937 26 C -0.198 4.198 27 H 0.129 0.871 28 C -0.044 4.044 29 N -0.246 5.246 30 C -0.005 4.005 31 C -0.132 4.132 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.208 0.792 36 H 0.187 0.813 37 H 0.253 0.747 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.051 0.949 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.021 0.979 44 H 0.070 0.930 45 H 0.236 0.764 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -33.619 -0.366 1.100 33.639 hybrid contribution 2.005 0.566 -0.068 2.085 sum -31.614 0.200 1.033 31.631 Atomic orbital electron populations 1.20936 0.86405 1.05112 1.04388 1.20353 0.99157 0.91013 0.93945 1.21393 0.90793 1.01355 1.00855 1.22299 0.94222 0.89073 1.01955 1.42557 1.06385 1.08322 1.42966 1.19781 0.82984 0.96526 1.29951 1.15491 0.82579 0.86596 0.76316 1.90779 1.85002 1.18337 1.53603 1.45470 1.04468 1.11437 1.73982 1.20686 0.82457 0.90225 1.02097 1.22425 0.90098 1.00516 1.00211 0.87047 1.24642 0.99981 1.01658 0.91397 0.85301 1.21884 0.85621 0.93632 0.96520 1.45468 1.02411 1.67222 1.19393 1.19418 0.81753 1.42126 0.93539 0.90171 1.25727 1.01883 1.02592 0.95446 1.70096 1.31566 1.56131 1.01736 0.85009 0.79393 0.76812 0.78084 1.18881 1.21816 1.21847 1.20818 0.90651 0.94674 0.87542 1.23866 0.93453 0.98731 1.03702 0.87057 1.23719 0.97431 0.89039 0.94169 1.70528 0.99694 1.29446 1.24911 1.21632 0.95699 0.80062 1.03103 1.20549 0.86809 1.01620 1.04258 0.88873 0.89023 0.89666 0.79175 0.81340 0.74654 0.91190 0.91132 0.94946 0.92736 0.94152 0.97897 0.93008 0.76370 0.80968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.20 10.02 71.24 0.71 0.51 16 2 C -0.04 -0.35 5.88 -19.85 -0.12 -0.47 16 3 C -0.12 -1.29 9.68 22.06 0.21 -1.07 16 4 C 0.05 0.89 10.51 83.37 0.88 1.77 16 5 N -0.33 -7.65 2.96 -344.20 -1.02 -8.66 16 6 C -0.18 -4.34 6.83 39.08 0.27 -4.07 16 7 C 0.60 15.75 7.59 85.13 0.65 16.39 16 8 O -0.59 -19.10 15.37 -4.59 -0.07 -19.18 16 9 N -0.70 -15.38 5.53 -471.94 -2.61 -17.99 16 10 C 0.17 4.16 5.96 86.38 0.51 4.67 16 11 C -0.11 -3.16 5.34 -10.80 -0.06 -3.22 16 12 H 0.11 3.03 8.04 -2.38 -0.02 3.01 16 13 C -0.16 -5.08 7.03 -8.70 -0.06 -5.14 16 14 H 0.13 3.68 8.12 -2.39 -0.02 3.66 16 15 C 0.15 5.96 7.10 87.72 0.62 6.58 16 16 N -0.62 -31.91 3.38 -681.42 -2.30 -34.22 16 17 C -0.24 -13.46 10.35 84.03 0.87 -12.59 16 18 H 0.08 4.31 7.84 -2.91 -0.02 4.29 16 19 C -0.06 -3.58 5.40 84.86 0.46 -3.12 16 20 N -0.95 -57.09 10.86 21.65 0.24 -56.85 16 21 Si 0.98 45.63 29.56 68.60 2.03 47.66 16 22 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 23 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 24 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 25 C 0.19 9.20 5.70 86.53 0.49 9.69 16 26 C -0.18 -6.46 6.77 -9.89 -0.07 -6.53 16 27 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 28 C 0.12 2.47 11.32 84.69 0.96 3.43 16 29 N -0.53 -12.60 11.25 -192.72 -2.17 -14.77 16 30 C 0.23 5.10 7.77 134.00 1.04 6.14 16 31 C -0.11 -1.59 9.75 22.40 0.22 -1.37 16 32 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.09 -0.07 8.09 -2.39 -0.02 -0.09 16 34 H 0.08 0.05 8.08 -2.39 -0.02 0.03 16 35 H 0.19 0.54 8.06 -2.91 -0.02 0.52 16 36 H 0.17 3.29 6.81 -2.91 -0.02 3.27 16 37 H 0.42 6.88 7.20 -92.70 -0.67 6.21 16 38 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.07 1.78 7.94 -2.38 -0.02 1.76 16 40 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 42 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 43 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.05 2.89 6.51 -2.39 -0.02 2.88 16 45 H 0.22 2.87 7.38 -2.91 -0.02 2.84 16 46 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -78.09 382.53 2.03 -76.06 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.34 Total: 16.34 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 7.59 Total: 11.61 kcal Atomic # 7 Polarization: -124.63 SS G_CDS: -7.86 Total: -132.50 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.07 Total: -19.18 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -78.09 2.03 -76.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978190292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.839 kcal (2) G-P(sol) polarization free energy of solvation -78.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds