Wall clock time and date at job start Tue Mar 31 2020 23:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 110.65835 * 2 1 4 4 C 1.54939 * 110.73748 * 236.61315 * 2 1 3 5 5 N 1.48391 * 103.37400 * 204.38799 * 4 2 1 6 6 C 1.34777 * 127.17003 * 219.23798 * 5 4 2 7 7 O 1.21542 * 120.00321 * 359.81511 * 6 5 4 8 8 C 1.47911 * 119.99532 * 179.82002 * 6 5 4 9 9 N 1.32370 * 120.64156 * 5.96320 * 8 6 5 10 10 N 1.28089 * 123.18733 * 179.97438 * 9 8 6 11 11 C 1.31804 * 123.49326 * 0.02562 * 10 9 8 12 12 C 1.40405 * 119.13621 * 359.97438 * 11 10 9 13 13 C 1.40240 * 122.73561 * 179.97438 * 12 11 10 14 14 C 1.36245 * 119.36715 * 180.02562 * 13 12 11 15 15 C 1.39384 * 121.07735 * 359.97438 * 14 13 12 16 16 C 1.36362 * 121.08741 * 0.02562 * 15 14 13 17 17 C 1.39834 * 119.41957 * 359.74689 * 16 15 14 18 18 C 1.47487 * 105.79440 * 39.06306 * 5 4 2 19 19 C 1.54011 * 107.24617 * 334.78608 * 18 5 4 20 20 H 1.08994 * 110.32372 * 242.31229 * 19 18 5 21 21 N 1.46503 * 110.32385 * 120.10287 * 19 18 5 22 22 C 1.36931 * 120.00333 * 86.45234 * 21 19 18 23 23 H 1.08004 * 119.99876 * 0.02562 * 22 21 19 24 24 C 1.38806 * 120.00184 * 179.97438 * 22 21 19 25 25 N 1.31619 * 119.99920 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 120.00301 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46617 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47327 * 119.99546 * 26 24 22 29 29 H 1.48500 * 109.47065 * 240.00267 * 26 24 22 30 30 H 1.08999 * 109.47015 * 296.80445 * 1 2 3 31 31 H 1.09001 * 109.47102 * 56.81091 * 1 2 3 32 32 H 1.09003 * 109.47035 * 176.80583 * 1 2 3 33 33 H 1.08993 * 109.47076 * 183.19534 * 3 2 1 34 34 H 1.09003 * 109.47137 * 303.19512 * 3 2 1 35 35 H 1.09001 * 109.46919 * 63.19019 * 3 2 1 36 36 H 1.09006 * 110.66591 * 322.72412 * 4 2 1 37 37 H 1.09000 * 110.66366 * 85.67921 * 4 2 1 38 38 H 1.07997 * 120.42852 * 180.02562 * 11 10 9 39 39 H 1.08001 * 120.31239 * 359.97438 * 13 12 11 40 40 H 1.08001 * 119.46721 * 179.97438 * 14 13 12 41 41 H 1.07996 * 119.45510 * 179.97438 * 15 14 13 42 42 H 1.07999 * 120.28762 * 180.02562 * 16 15 14 43 43 H 1.08991 * 109.91493 * 215.32928 * 18 5 4 44 44 H 1.09002 * 109.91204 * 94.23989 * 18 5 4 45 45 H 0.97003 * 119.99374 * 266.45273 * 21 19 18 46 46 H 0.97004 * 120.00193 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0698 1.4316 0.0000 4 6 2.0787 -0.7974 -1.2099 5 7 3.4299 -1.2156 -0.7611 6 6 4.5563 -1.2581 -1.4999 7 8 4.5279 -0.9333 -2.6708 8 6 5.8272 -1.7000 -0.8856 9 7 5.8514 -2.1674 0.3526 10 7 6.9231 -2.5635 0.9317 11 6 8.1092 -2.5464 0.3572 12 6 8.2242 -2.0728 -0.9596 13 6 9.4480 -2.0208 -1.6426 14 6 9.4807 -1.5478 -2.9199 15 6 8.3187 -1.1160 -3.5572 16 6 7.1123 -1.1528 -2.9225 17 6 7.0398 -1.6367 -1.6126 18 6 3.2876 -1.5717 0.6630 19 6 2.0776 -0.7916 1.2100 20 1 2.3928 -0.1081 1.9984 21 7 1.0608 -1.7178 1.7145 22 6 1.1318 -2.1772 3.0025 23 1 1.9372 -1.8564 3.6467 24 6 0.1681 -3.0544 3.4807 25 7 -0.8142 -3.4442 2.6962 26 14 0.2645 -3.6806 5.2380 27 1 1.4546 -3.0962 5.9070 28 1 -0.9626 -3.2825 5.9734 29 1 0.3788 -5.1612 5.2303 30 1 -0.3633 0.4634 0.9172 31 1 -0.3633 0.5626 -0.8600 32 1 -0.3633 -1.0261 -0.0573 33 1 3.1580 1.4096 -0.0573 34 1 1.6715 1.9701 -0.8600 35 1 1.7643 1.9351 0.9172 36 1 1.4559 -1.6693 -1.4103 37 1 2.1430 -0.1611 -2.0926 38 1 8.9810 -2.8929 0.8920 39 1 10.3559 -2.3519 -1.1604 40 1 10.4223 -1.5066 -3.4473 41 1 8.3749 -0.7454 -4.5700 42 1 6.2200 -0.8153 -3.4288 43 1 4.1883 -1.2896 1.2080 44 1 3.1140 -2.6432 0.7622 45 1 0.3373 -2.0057 1.1361 46 1 -1.4879 -4.0569 3.0304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996040055.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:11 Heat of formation + Delta-G solvation = 76.960446 kcal Electronic energy + Delta-G solvation = -29762.187039 eV Core-core repulsion = 25846.330612 eV Total energy + Delta-G solvation = -3915.856427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.67124 -39.83232 -38.27884 -37.97952 -34.10450 -33.64613 -33.02854 -32.01899 -30.73631 -30.63662 -27.76219 -27.08650 -26.63661 -25.16211 -24.50656 -23.76010 -22.95580 -21.69078 -20.03146 -18.71164 -18.53989 -18.23620 -17.22661 -16.84789 -16.18346 -15.92573 -15.88177 -15.02490 -14.88650 -14.60998 -14.37247 -14.14879 -13.89576 -13.78617 -13.58606 -13.14072 -12.83726 -12.72179 -12.53894 -12.41027 -12.17878 -11.86169 -11.74460 -11.63737 -11.44182 -11.20024 -10.88086 -10.86908 -10.77710 -10.51166 -10.38404 -10.13852 -9.85303 -9.77233 -9.66002 -9.62438 -9.54349 -8.91780 -8.76663 -8.35549 -6.99202 -5.77405 -3.06396 -0.23749 0.36226 1.34559 2.48463 2.91687 2.99287 3.45329 3.52150 3.53725 3.75754 3.79758 4.12466 4.19438 4.32144 4.43338 4.60059 4.71075 4.75539 4.91781 4.95367 5.14222 5.21305 5.25416 5.34171 5.48661 5.54188 5.62331 5.70096 5.79479 5.81140 5.87260 5.91961 6.02151 6.05349 6.09689 6.10879 6.23512 6.32738 6.38182 6.41485 6.43758 6.55041 6.56784 6.74841 6.91893 7.01364 7.71744 7.74603 8.10182 8.41252 8.60069 9.53338 10.07481 10.42553 11.45013 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013880 B = 0.003345 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.830190 B = 8369.544132 C = 9905.982362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.089 4.089 3 C -0.129 4.129 4 C 0.116 3.884 5 N -0.583 5.583 6 C 0.588 3.412 7 O -0.546 6.546 8 C 0.073 3.927 9 N -0.213 5.213 10 N -0.262 5.262 11 C 0.097 3.903 12 C -0.087 4.087 13 C -0.097 4.097 14 C -0.098 4.098 15 C -0.105 4.105 16 C -0.089 4.089 17 C -0.047 4.047 18 C 0.075 3.925 19 C 0.174 3.826 20 H 0.065 0.935 21 N -0.714 5.714 22 C -0.240 4.240 23 H 0.073 0.927 24 C -0.010 4.010 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.279 1.279 28 H -0.293 1.293 29 H -0.292 1.292 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.180 0.820 39 H 0.140 0.860 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.174 0.826 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.388 0.612 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.918 6.811 -12.188 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.091 4.091 3 C -0.187 4.187 4 C -0.006 4.006 5 N -0.312 5.312 6 C 0.374 3.626 7 O -0.425 6.425 8 C -0.084 4.084 9 N -0.049 5.049 10 N -0.094 5.094 11 C -0.077 4.077 12 C -0.094 4.094 13 C -0.117 4.117 14 C -0.118 4.118 15 C -0.125 4.125 16 C -0.108 4.108 17 C -0.055 4.055 18 C -0.050 4.050 19 C 0.062 3.938 20 H 0.083 0.917 21 N -0.356 5.356 22 C -0.371 4.371 23 H 0.091 0.909 24 C -0.206 4.206 25 N -0.580 5.580 26 Si 0.737 3.263 27 H -0.204 1.204 28 H -0.220 1.220 29 H -0.219 1.219 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.197 0.803 39 H 0.157 0.843 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.191 0.809 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.225 0.775 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 18.009 6.530 -11.171 22.176 hybrid contribution 0.865 -0.437 -0.345 1.028 sum 18.874 6.093 -11.517 22.934 Atomic orbital electron populations 1.21593 0.92675 1.02677 1.01291 1.21942 0.96712 0.94980 0.95448 1.21707 1.00387 0.94949 1.01610 1.22717 0.81520 0.98831 0.97488 1.48777 1.07499 1.61507 1.13433 1.17002 0.81572 0.78987 0.85079 1.90581 1.84615 1.51839 1.15512 1.22993 0.94326 0.98027 0.93043 1.73147 1.19693 1.05127 1.06974 1.72783 0.95473 1.11781 1.29327 1.24856 0.98373 0.92902 0.91610 1.18932 0.94421 1.00421 0.95647 1.20935 0.96145 0.99573 0.95032 1.21143 0.98953 0.96818 0.94843 1.21256 0.92268 0.98361 1.00595 1.22040 1.00514 0.95428 0.92792 1.18615 0.92082 0.98782 0.95973 1.23791 1.01303 1.01981 0.77971 1.21167 0.88676 0.90953 0.92995 0.91666 1.42634 1.28198 1.52366 1.12442 1.19310 1.07987 1.21148 0.88642 0.90936 1.24717 0.97557 1.00254 0.98111 1.69662 1.15218 1.37834 1.35292 0.86137 0.77170 0.78425 0.84593 1.20441 1.21976 1.21922 0.91593 0.93716 0.91342 0.93179 0.92886 0.92200 0.90332 0.90184 0.80344 0.84258 0.85045 0.84915 0.80871 0.89706 0.89925 0.77535 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.01 7.82 37.16 0.29 -1.72 16 2 C -0.09 -1.43 0.93 -152.63 -0.14 -1.57 16 3 C -0.13 -1.80 8.50 37.16 0.32 -1.48 16 4 C 0.12 1.86 5.99 -1.98 -0.01 1.85 16 5 N -0.58 -10.02 3.23 -170.62 -0.55 -10.57 16 6 C 0.59 10.04 7.86 -12.30 -0.10 9.94 16 7 O -0.55 -9.53 13.82 5.33 0.07 -9.46 16 8 C 0.07 1.18 6.85 -82.42 -0.56 0.62 16 9 N -0.21 -3.65 8.00 33.56 0.27 -3.38 16 10 N -0.26 -4.04 11.42 30.90 0.35 -3.69 16 11 C 0.10 1.08 11.20 -16.75 -0.19 0.90 16 12 C -0.09 -0.97 5.75 -106.85 -0.61 -1.58 16 13 C -0.10 -0.74 9.84 -39.55 -0.39 -1.13 16 14 C -0.10 -0.69 9.95 -39.87 -0.40 -1.09 16 15 C -0.11 -0.90 9.95 -39.83 -0.40 -1.30 16 16 C -0.09 -1.05 9.26 -39.66 -0.37 -1.42 16 17 C -0.05 -0.64 5.77 -106.57 -0.61 -1.25 16 18 C 0.07 1.41 5.78 -2.98 -0.02 1.39 16 19 C 0.17 3.37 3.10 -66.55 -0.21 3.16 16 20 H 0.07 1.29 7.83 -51.93 -0.41 0.88 16 21 N -0.71 -16.92 4.51 -52.10 -0.23 -17.15 16 22 C -0.24 -6.43 9.97 -15.06 -0.15 -6.58 16 23 H 0.07 1.92 7.83 -52.48 -0.41 1.50 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -27.38 13.06 55.49 0.72 -26.65 16 26 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.24 6.23 -51.93 -0.32 0.92 16 33 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.30 8.02 -51.93 -0.42 0.88 16 37 H 0.08 1.19 7.79 -51.93 -0.40 0.79 16 38 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 41 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.17 2.28 5.12 -52.49 -0.27 2.01 16 43 H 0.08 1.60 6.11 -51.93 -0.32 1.29 16 44 H 0.08 1.79 7.92 -51.93 -0.41 1.38 16 45 H 0.39 9.64 5.51 -40.82 -0.23 9.42 16 46 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -31.89 372.49 -8.54 -40.44 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -6.12 Total: 9.29 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -3.64 Total: -1.65 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: 0.56 Total: -61.45 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.07 Total: -9.46 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.89 -8.54 -40.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996040055.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.397 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds