Wall clock time and date at job start Tue Mar 31 2020 23:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 110.65835 * 2 1 4 4 C 1.54939 * 110.73748 * 236.61315 * 2 1 3 5 5 N 1.48391 * 103.37400 * 204.38799 * 4 2 1 6 6 C 1.34777 * 127.17003 * 219.23798 * 5 4 2 7 7 O 1.21542 * 120.00321 * 359.81511 * 6 5 4 8 8 C 1.47911 * 119.99532 * 179.82002 * 6 5 4 9 9 N 1.32370 * 120.64156 * 5.96320 * 8 6 5 10 10 N 1.28089 * 123.18733 * 179.97438 * 9 8 6 11 11 C 1.31804 * 123.49326 * 0.02562 * 10 9 8 12 12 C 1.40405 * 119.13621 * 359.97438 * 11 10 9 13 13 C 1.40240 * 122.73561 * 179.97438 * 12 11 10 14 14 C 1.36245 * 119.36715 * 180.02562 * 13 12 11 15 15 C 1.39384 * 121.07735 * 359.97438 * 14 13 12 16 16 C 1.36362 * 121.08741 * 0.02562 * 15 14 13 17 17 C 1.39834 * 119.41957 * 359.74689 * 16 15 14 18 18 C 1.47487 * 105.79440 * 39.06306 * 5 4 2 19 19 C 1.54011 * 107.24617 * 334.78608 * 18 5 4 20 20 H 1.08994 * 110.32372 * 242.31229 * 19 18 5 21 21 N 1.46503 * 110.32385 * 120.10287 * 19 18 5 22 22 C 1.36931 * 120.00333 * 86.45234 * 21 19 18 23 23 H 1.08004 * 119.99876 * 0.02562 * 22 21 19 24 24 C 1.38806 * 120.00184 * 179.97438 * 22 21 19 25 25 N 1.31619 * 119.99920 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 120.00301 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46617 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47327 * 119.99546 * 26 24 22 29 29 H 1.48500 * 109.47065 * 240.00267 * 26 24 22 30 30 H 1.08999 * 109.47015 * 296.80445 * 1 2 3 31 31 H 1.09001 * 109.47102 * 56.81091 * 1 2 3 32 32 H 1.09003 * 109.47035 * 176.80583 * 1 2 3 33 33 H 1.08993 * 109.47076 * 183.19534 * 3 2 1 34 34 H 1.09003 * 109.47137 * 303.19512 * 3 2 1 35 35 H 1.09001 * 109.46919 * 63.19019 * 3 2 1 36 36 H 1.09006 * 110.66591 * 322.72412 * 4 2 1 37 37 H 1.09000 * 110.66366 * 85.67921 * 4 2 1 38 38 H 1.07997 * 120.42852 * 180.02562 * 11 10 9 39 39 H 1.08001 * 120.31239 * 359.97438 * 13 12 11 40 40 H 1.08001 * 119.46721 * 179.97438 * 14 13 12 41 41 H 1.07996 * 119.45510 * 179.97438 * 15 14 13 42 42 H 1.07999 * 120.28762 * 180.02562 * 16 15 14 43 43 H 1.08991 * 109.91493 * 215.32928 * 18 5 4 44 44 H 1.09002 * 109.91204 * 94.23989 * 18 5 4 45 45 H 0.97003 * 119.99374 * 266.45273 * 21 19 18 46 46 H 0.97004 * 120.00193 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0698 1.4316 0.0000 4 6 2.0787 -0.7974 -1.2099 5 7 3.4299 -1.2156 -0.7611 6 6 4.5563 -1.2581 -1.4999 7 8 4.5279 -0.9333 -2.6708 8 6 5.8272 -1.7000 -0.8856 9 7 5.8514 -2.1674 0.3526 10 7 6.9231 -2.5635 0.9317 11 6 8.1092 -2.5464 0.3572 12 6 8.2242 -2.0728 -0.9596 13 6 9.4480 -2.0208 -1.6426 14 6 9.4807 -1.5478 -2.9199 15 6 8.3187 -1.1160 -3.5572 16 6 7.1123 -1.1528 -2.9225 17 6 7.0398 -1.6367 -1.6126 18 6 3.2876 -1.5717 0.6630 19 6 2.0776 -0.7916 1.2100 20 1 2.3928 -0.1081 1.9984 21 7 1.0608 -1.7178 1.7145 22 6 1.1318 -2.1772 3.0025 23 1 1.9372 -1.8564 3.6467 24 6 0.1681 -3.0544 3.4807 25 7 -0.8142 -3.4442 2.6962 26 14 0.2645 -3.6806 5.2380 27 1 1.4546 -3.0962 5.9070 28 1 -0.9626 -3.2825 5.9734 29 1 0.3788 -5.1612 5.2303 30 1 -0.3633 0.4634 0.9172 31 1 -0.3633 0.5626 -0.8600 32 1 -0.3633 -1.0261 -0.0573 33 1 3.1580 1.4096 -0.0573 34 1 1.6715 1.9701 -0.8600 35 1 1.7643 1.9351 0.9172 36 1 1.4559 -1.6693 -1.4103 37 1 2.1430 -0.1611 -2.0926 38 1 8.9810 -2.8929 0.8920 39 1 10.3559 -2.3519 -1.1604 40 1 10.4223 -1.5066 -3.4473 41 1 8.3749 -0.7454 -4.5700 42 1 6.2200 -0.8153 -3.4288 43 1 4.1883 -1.2896 1.2080 44 1 3.1140 -2.6432 0.7622 45 1 0.3373 -2.0057 1.1361 46 1 -1.4879 -4.0569 3.0304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996040055.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:10 Heat of formation + Delta-G solvation = 57.144984 kcal Electronic energy + Delta-G solvation = -29763.046302 eV Core-core repulsion = 25846.330612 eV Total energy + Delta-G solvation = -3916.715690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.64569 -41.16971 -39.43719 -39.03137 -35.85215 -34.89025 -34.25866 -32.84617 -32.64055 -31.48475 -29.36980 -28.28398 -28.02979 -26.25351 -25.66703 -25.34288 -23.83492 -23.19813 -21.24791 -20.16333 -19.56724 -19.14416 -19.09501 -17.91580 -17.32642 -17.20893 -17.00548 -16.57938 -16.04141 -15.78300 -15.63744 -15.46583 -15.20380 -14.95864 -14.84056 -14.54673 -14.24377 -13.85672 -13.66135 -13.47040 -13.29572 -13.22697 -13.10147 -12.85057 -12.78035 -12.67757 -12.58283 -12.32658 -12.15726 -12.00258 -11.81100 -11.74577 -11.43874 -11.30189 -11.04764 -10.81511 -10.71770 -10.42394 -9.83420 -9.54486 -9.00681 -7.91835 -5.19613 -1.14309 -0.47728 0.51935 1.42975 1.48393 1.49896 1.59244 1.65851 2.01789 2.58057 2.68942 2.85812 3.18726 3.31951 3.40154 3.50359 3.58915 3.68158 3.76723 3.83238 3.92065 4.06988 4.18786 4.23824 4.32572 4.40337 4.44785 4.53805 4.61000 4.61499 4.74650 4.78783 4.87024 4.95284 4.98887 5.01312 5.05513 5.12262 5.13957 5.20526 5.31783 5.32548 5.40034 5.41357 5.54466 5.60494 5.75300 6.30212 6.33298 6.78138 7.38321 7.58261 8.10393 8.36043 9.31341 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013880 B = 0.003345 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.830190 B = 8369.544132 C = 9905.982362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.078 4.078 3 C -0.122 4.122 4 C 0.117 3.883 5 N -0.587 5.587 6 C 0.587 3.413 7 O -0.553 6.553 8 C 0.045 3.955 9 N -0.245 5.245 10 N -0.311 5.311 11 C 0.117 3.883 12 C -0.102 4.102 13 C -0.079 4.079 14 C -0.092 4.092 15 C -0.084 4.084 16 C -0.123 4.123 17 C -0.067 4.067 18 C 0.098 3.902 19 C 0.169 3.831 20 H 0.062 0.938 21 N -0.722 5.722 22 C -0.236 4.236 23 H 0.073 0.927 24 C -0.070 4.070 25 N -0.966 5.966 26 Si 0.966 3.034 27 H -0.268 1.268 28 H -0.293 1.293 29 H -0.298 1.298 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.227 0.773 39 H 0.184 0.816 40 H 0.177 0.823 41 H 0.161 0.839 42 H 0.152 0.848 43 H 0.083 0.917 44 H 0.047 0.953 45 H 0.380 0.620 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.918 7.853 -13.464 27.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.080 4.080 3 C -0.179 4.179 4 C -0.004 4.004 5 N -0.317 5.317 6 C 0.374 3.626 7 O -0.433 6.433 8 C -0.113 4.113 9 N -0.081 5.081 10 N -0.143 5.143 11 C -0.056 4.056 12 C -0.110 4.110 13 C -0.099 4.099 14 C -0.111 4.111 15 C -0.104 4.104 16 C -0.143 4.143 17 C -0.075 4.075 18 C -0.028 4.028 19 C 0.058 3.942 20 H 0.080 0.920 21 N -0.363 5.363 22 C -0.367 4.367 23 H 0.091 0.909 24 C -0.262 4.262 25 N -0.617 5.617 26 Si 0.796 3.204 27 H -0.193 1.193 28 H -0.220 1.220 29 H -0.225 1.225 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.115 0.885 38 H 0.243 0.757 39 H 0.201 0.799 40 H 0.194 0.806 41 H 0.179 0.821 42 H 0.170 0.830 43 H 0.101 0.899 44 H 0.065 0.935 45 H 0.216 0.784 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 22.050 7.603 -12.457 26.442 hybrid contribution -0.087 -0.735 -0.128 0.752 sum 21.963 6.868 -12.585 26.228 Atomic orbital electron populations 1.21501 0.92506 1.01419 1.02023 1.21883 0.96703 0.95954 0.93449 1.21653 1.00027 0.93271 1.02960 1.22734 0.80963 0.98679 0.98037 1.48749 1.08148 1.62186 1.12640 1.17306 0.81939 0.78385 0.84996 1.90571 1.84971 1.52051 1.15657 1.22886 0.94768 1.00012 0.93634 1.72964 1.21392 1.06047 1.07694 1.72661 0.96641 1.14483 1.30467 1.25586 0.98180 0.90020 0.91800 1.19253 0.95044 1.00867 0.95822 1.21483 0.95901 0.97459 0.95056 1.21671 0.99915 0.94836 0.94651 1.21682 0.91444 0.95722 1.01506 1.21890 1.01505 0.98127 0.92735 1.18819 0.92118 0.99766 0.96769 1.23253 1.00759 0.99492 0.79320 1.21327 0.88043 0.90505 0.94299 0.91984 1.42733 1.28978 1.53052 1.11566 1.19620 1.07225 1.20145 0.89755 0.90875 1.25429 0.97822 1.01308 1.01656 1.69802 1.16098 1.38936 1.36821 0.85179 0.77290 0.77303 0.80657 1.19263 1.21992 1.22508 0.92916 0.90471 0.93871 0.93674 0.90456 0.91777 0.91453 0.88499 0.75712 0.79862 0.80596 0.82115 0.83035 0.89914 0.93500 0.78383 0.94131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.80 7.82 71.98 0.56 -3.24 16 2 C -0.08 -2.55 0.93 -50.97 -0.05 -2.59 16 3 C -0.12 -3.27 8.50 71.98 0.61 -2.66 16 4 C 0.12 3.86 5.99 86.68 0.52 4.38 16 5 N -0.59 -21.31 3.23 -812.00 -2.62 -23.93 16 6 C 0.59 21.13 7.86 86.81 0.68 21.81 16 7 O -0.55 -20.06 13.82 -3.85 -0.05 -20.12 16 8 C 0.04 1.52 6.85 42.44 0.29 1.81 16 9 N -0.25 -8.89 8.00 -47.74 -0.38 -9.27 16 10 N -0.31 -9.80 11.42 -56.15 -0.64 -10.44 16 11 C 0.12 2.42 11.20 85.22 0.95 3.38 16 12 C -0.10 -2.05 5.75 -21.31 -0.12 -2.17 16 13 C -0.08 -0.81 9.84 22.29 0.22 -0.59 16 14 C -0.09 -0.79 9.95 22.08 0.22 -0.57 16 15 C -0.08 -1.16 9.95 22.11 0.22 -0.94 16 16 C -0.12 -2.85 9.26 22.22 0.21 -2.65 16 17 C -0.07 -1.83 5.77 -21.12 -0.12 -1.95 16 18 C 0.10 3.93 5.78 86.53 0.50 4.43 16 19 C 0.17 6.82 3.10 45.88 0.14 6.96 16 20 H 0.06 2.54 7.83 -2.39 -0.02 2.52 16 21 N -0.72 -35.84 4.51 -318.73 -1.44 -37.28 16 22 C -0.24 -13.06 9.97 84.03 0.84 -12.22 16 23 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 24 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 25 N -0.97 -58.81 13.06 21.65 0.28 -58.53 16 26 Si 0.97 46.90 29.55 68.60 2.03 48.92 16 27 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 28 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 29 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.04 1.63 6.23 -2.39 -0.01 1.61 16 33 H 0.04 1.26 8.09 -2.39 -0.02 1.24 16 34 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.07 2.35 8.02 -2.38 -0.02 2.33 16 37 H 0.10 2.86 7.79 -2.39 -0.02 2.84 16 38 H 0.23 2.14 8.06 -2.91 -0.02 2.11 16 39 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16 40 H 0.18 0.07 8.06 -2.91 -0.02 0.05 16 41 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 42 H 0.15 4.12 5.12 -2.91 -0.01 4.10 16 43 H 0.08 3.37 6.11 -2.39 -0.01 3.35 16 44 H 0.05 2.21 7.92 -2.39 -0.02 2.19 16 45 H 0.38 19.97 5.51 -92.71 -0.51 19.46 16 46 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -75.32 372.49 3.82 -71.50 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.51 Total: 29.48 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 6.14 Total: 9.65 kcal Atomic # 7 Polarization: -134.64 SS G_CDS: -4.80 Total: -139.44 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.05 Total: -20.12 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -75.32 3.82 -71.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996040055.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.648 kcal (2) G-P(sol) polarization free energy of solvation -75.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds