Wall clock time and date at job start Tue Mar 31 2020 23:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 110.88459 * 2 1 4 4 C 1.55131 * 111.19669 * 236.06835 * 2 1 3 5 5 N 1.47418 * 104.71973 * 279.19181 * 4 2 1 6 6 C 1.34777 * 125.64779 * 155.81562 * 5 4 2 7 7 O 1.21546 * 120.00083 * 4.78072 * 6 5 4 8 8 C 1.47867 * 120.00065 * 184.77915 * 6 5 4 9 9 C 1.40637 * 120.26233 * 172.24391 * 8 6 5 10 10 N 1.30853 * 121.66015 * 179.97438 * 9 8 6 11 11 C 1.33589 * 121.58121 * 0.02562 * 10 9 8 12 12 C 1.40637 * 121.62401 * 180.02562 * 11 10 9 13 13 N 1.31156 * 120.03636 * 179.97438 * 12 11 10 14 14 C 1.32487 * 122.89382 * 359.97438 * 13 12 11 15 15 C 1.36321 * 121.71155 * 359.97438 * 14 13 12 16 16 C 1.40596 * 118.64893 * 0.02562 * 15 14 13 17 17 C 1.38996 * 120.26000 * 352.21674 * 8 6 5 18 18 C 1.47020 * 108.70720 * 335.55013 * 5 4 2 19 19 C 1.54330 * 107.26890 * 1.28900 * 18 5 4 20 20 H 1.08998 * 110.72080 * 263.82763 * 19 18 5 21 21 N 1.46503 * 110.72133 * 140.55319 * 19 18 5 22 22 C 1.36936 * 119.99660 * 86.45471 * 21 19 18 23 23 H 1.08006 * 120.00167 * 0.02562 * 22 21 19 24 24 C 1.38810 * 119.99747 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99735 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 120.00340 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47338 * 89.99998 * 26 24 22 28 28 H 1.48496 * 109.47222 * 210.00292 * 26 24 22 29 29 H 1.48507 * 109.46732 * 329.99928 * 26 24 22 30 30 H 1.08999 * 109.47205 * 296.11825 * 1 2 3 31 31 H 1.09001 * 109.46678 * 56.12470 * 1 2 3 32 32 H 1.09001 * 109.46680 * 176.11865 * 1 2 3 33 33 H 1.09001 * 109.47388 * 183.87910 * 3 2 1 34 34 H 1.09006 * 109.47001 * 303.87818 * 3 2 1 35 35 H 1.09001 * 109.47086 * 63.87685 * 3 2 1 36 36 H 1.08997 * 110.49674 * 160.35010 * 4 2 1 37 37 H 1.09007 * 110.34187 * 37.95274 * 4 2 1 38 38 H 1.08003 * 119.16860 * 359.94663 * 9 8 6 39 39 H 1.07996 * 119.98172 * 359.97438 * 12 11 10 40 40 H 1.07996 * 119.14641 * 179.97438 * 14 13 12 41 41 H 1.07993 * 120.67627 * 179.97438 * 15 14 13 42 42 H 1.07997 * 121.10827 * 0.02562 * 17 8 6 43 43 H 1.08998 * 109.88432 * 120.70566 * 18 5 4 44 44 H 1.08996 * 109.88783 * 241.71766 * 18 5 4 45 45 H 0.96998 * 120.00006 * 266.45946 * 21 19 18 46 46 H 0.96998 * 119.99943 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0909 -0.8074 -1.2000 5 7 2.0140 -2.2161 -0.7725 6 6 1.9473 -3.2834 -1.5928 7 8 2.0349 -3.1319 -2.7956 8 6 1.7676 -4.6387 -1.0295 9 6 1.5343 -5.7344 -1.8797 10 7 1.3720 -6.9452 -1.4108 11 6 1.4193 -7.2002 -0.1003 12 6 1.2454 -8.5012 0.4045 13 7 1.2984 -8.7163 1.6972 14 6 1.5128 -7.7511 2.5791 15 6 1.6949 -6.4561 2.1939 16 6 1.6515 -6.1482 0.8228 17 6 1.8283 -4.8399 0.3445 18 6 2.0286 -2.2643 0.6969 19 6 2.0862 -0.8074 1.2026 20 1 3.1133 -0.5154 1.4212 21 7 1.2342 -0.6339 2.3817 22 6 1.7296 -0.9027 3.6297 23 1 2.7484 -1.2422 3.7448 24 6 0.9222 -0.7389 4.7469 25 7 1.3982 -0.9978 5.9465 26 14 -0.8401 -0.1524 4.5480 27 1 -1.7360 -1.3247 4.3800 28 1 -1.2465 0.6123 5.7542 29 1 -0.9388 0.7215 3.3513 30 1 -0.3633 0.4524 0.9227 31 1 -0.3633 0.5728 -0.8533 32 1 -0.3633 -1.0253 -0.0696 33 1 3.1630 1.4035 -0.0695 34 1 1.6698 1.9732 -0.8532 35 1 1.7822 1.9303 0.9227 36 1 3.1254 -0.5271 -1.3985 37 1 1.4765 -0.6457 -2.0858 38 1 1.4877 -5.5723 -2.9465 39 1 1.0681 -9.3237 -0.2726 40 1 1.5442 -7.9965 3.6303 41 1 1.8681 -5.6824 2.9271 42 1 2.0060 -4.0175 1.0216 43 1 1.1220 -2.7476 1.0609 44 1 2.9049 -2.8135 1.0411 45 1 0.3193 -0.3287 2.2784 46 1 0.8342 -0.8830 6.7272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996042787.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:28 Heat of formation + Delta-G solvation = 75.532326 kcal Electronic energy + Delta-G solvation = -29898.125818 eV Core-core repulsion = 25982.207463 eV Total energy + Delta-G solvation = -3915.918355 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.50894 -40.31342 -38.55302 -37.63321 -34.75693 -34.12237 -33.18781 -31.72161 -31.30779 -30.55860 -28.39303 -27.31689 -26.83509 -25.54321 -24.40461 -23.97497 -22.70646 -21.62706 -20.30294 -19.22784 -18.74650 -17.86291 -17.62625 -17.09528 -16.43585 -16.12093 -15.70033 -15.18413 -15.04955 -14.75099 -14.47164 -14.33610 -14.09108 -13.89931 -13.67194 -13.50483 -13.16588 -12.87675 -12.73700 -12.72008 -12.51597 -12.41543 -12.22589 -11.78552 -11.53968 -11.44761 -11.15157 -10.99315 -10.75516 -10.71010 -10.46786 -10.32159 -10.11259 -10.01732 -9.75408 -9.57117 -9.49443 -9.14608 -8.64880 -8.63674 -7.55966 -5.99514 -3.38372 -0.11534 0.32679 1.57858 2.39470 2.84262 3.15223 3.19699 3.22606 3.30934 3.88887 3.91066 4.12159 4.25640 4.31596 4.38009 4.45282 4.55548 4.62283 4.74487 4.82320 4.89862 5.11726 5.18741 5.25386 5.28881 5.34422 5.41043 5.43239 5.51573 5.54292 5.65408 5.72827 5.74220 5.81378 5.83325 5.88281 5.98842 6.06040 6.08548 6.16088 6.26978 6.29678 6.38125 6.41490 6.54377 7.39247 7.49877 7.74060 7.74540 8.01936 8.19018 8.95335 9.67598 9.85308 11.17659 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009222 B = 0.004534 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.580146 B = 6173.538356 C = 8607.615673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 C -0.130 4.130 4 C 0.120 3.880 5 N -0.603 5.603 6 C 0.576 3.424 7 O -0.541 6.541 8 C -0.170 4.170 9 C 0.182 3.818 10 N -0.464 5.464 11 C 0.080 3.920 12 C 0.154 3.846 13 N -0.467 5.467 14 C 0.068 3.932 15 C -0.125 4.125 16 C -0.087 4.087 17 C -0.048 4.048 18 C 0.057 3.943 19 C 0.186 3.814 20 H 0.079 0.921 21 N -0.735 5.735 22 C -0.259 4.259 23 H 0.093 0.907 24 C 0.015 3.985 25 N -0.925 5.925 26 Si 0.877 3.123 27 H -0.283 1.283 28 H -0.288 1.288 29 H -0.276 1.276 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.175 0.825 39 H 0.172 0.828 40 H 0.162 0.838 41 H 0.152 0.848 42 H 0.189 0.811 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.367 0.633 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.583 -5.305 -12.089 13.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.091 4.091 3 C -0.188 4.188 4 C -0.003 4.003 5 N -0.335 5.335 6 C 0.364 3.636 7 O -0.420 6.420 8 C -0.177 4.177 9 C 0.007 3.993 10 N -0.172 5.172 11 C -0.043 4.043 12 C -0.019 4.019 13 N -0.176 5.176 14 C -0.074 4.074 15 C -0.145 4.145 16 C -0.094 4.094 17 C -0.073 4.073 18 C -0.068 4.068 19 C 0.074 3.926 20 H 0.096 0.904 21 N -0.379 5.379 22 C -0.388 4.388 23 H 0.111 0.889 24 C -0.182 4.182 25 N -0.571 5.571 26 Si 0.707 3.293 27 H -0.209 1.209 28 H -0.214 1.214 29 H -0.202 1.202 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.192 0.808 39 H 0.189 0.811 40 H 0.179 0.821 41 H 0.170 0.830 42 H 0.205 0.795 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.204 0.796 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.500 -6.918 -12.521 14.314 hybrid contribution -1.042 1.877 0.432 2.190 sum -0.542 -5.041 -12.089 13.109 Atomic orbital electron populations 1.21713 0.93857 1.01951 1.01934 1.22069 0.96283 0.95808 0.94918 1.21663 1.00673 0.94166 1.02304 1.22405 1.01148 0.79157 0.97564 1.48349 1.71175 1.06295 1.07692 1.17628 0.77208 0.83106 0.85629 1.90767 1.51435 1.85693 1.14056 1.21042 1.06421 0.95642 0.94575 1.23130 0.89507 0.85824 1.00829 1.67985 1.13627 1.22262 1.13354 1.20109 0.98934 0.95409 0.89815 1.23083 0.93560 0.93818 0.91478 1.67440 1.10739 1.36622 1.02766 1.22331 0.96754 0.88586 0.99748 1.22177 0.98519 0.99101 0.94696 1.19009 1.00923 0.94305 0.95156 1.23780 0.89734 0.97726 0.96105 1.23773 1.01501 1.03315 0.78227 1.21221 0.95917 0.89294 0.86173 0.90360 1.42881 1.12300 1.80563 1.02110 1.19051 0.98844 1.39262 0.81684 0.88917 1.24651 0.97630 1.00780 0.95109 1.69684 1.36184 1.53848 0.97355 0.86701 0.86503 0.78896 0.77249 1.20900 1.21441 1.20198 0.91632 0.92592 0.92585 0.92334 0.92802 0.91348 0.90932 0.90361 0.80850 0.81097 0.82066 0.83014 0.79480 0.89893 0.90809 0.79650 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 7.94 37.16 0.30 -1.54 16 2 C -0.09 -1.16 0.87 -152.24 -0.13 -1.30 16 3 C -0.13 -1.53 8.68 37.16 0.32 -1.20 16 4 C 0.12 1.50 5.83 -2.41 -0.01 1.49 16 5 N -0.60 -8.27 3.31 -172.88 -0.57 -8.84 16 6 C 0.58 8.47 7.81 -12.32 -0.10 8.37 16 7 O -0.54 -9.07 16.67 5.32 0.09 -8.99 16 8 C -0.17 -2.32 5.89 -104.77 -0.62 -2.93 16 9 C 0.18 2.37 10.73 -17.06 -0.18 2.19 16 10 N -0.46 -6.23 10.33 -10.65 -0.11 -6.34 16 11 C 0.08 1.08 6.62 -84.81 -0.56 0.51 16 12 C 0.15 1.85 11.25 -16.94 -0.19 1.66 16 13 N -0.47 -5.87 10.28 -13.11 -0.13 -6.01 16 14 C 0.07 0.79 11.08 -17.96 -0.20 0.60 16 15 C -0.12 -1.51 9.88 -39.38 -0.39 -1.90 16 16 C -0.09 -1.16 5.75 -106.80 -0.61 -1.77 16 17 C -0.05 -0.63 8.48 -38.48 -0.33 -0.96 16 18 C 0.06 0.81 4.31 -3.06 -0.01 0.80 16 19 C 0.19 2.90 2.85 -66.09 -0.19 2.71 16 20 H 0.08 1.25 8.02 -51.93 -0.42 0.83 16 21 N -0.74 -14.47 4.88 -51.65 -0.25 -14.72 16 22 C -0.26 -6.27 10.46 -15.06 -0.16 -6.43 16 23 H 0.09 2.41 8.06 -52.48 -0.42 1.98 16 24 C 0.02 0.41 5.50 -17.43 -0.10 0.31 16 25 N -0.92 -26.42 13.97 55.49 0.78 -25.64 16 26 Si 0.88 20.01 27.74 -169.99 -4.71 15.29 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.28 -5.86 6.52 56.52 0.37 -5.49 16 30 H 0.06 0.97 6.34 -51.93 -0.33 0.64 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.78 7.91 -51.93 -0.41 0.37 16 33 H 0.06 0.63 8.07 -51.93 -0.42 0.21 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.84 7.99 -51.93 -0.41 0.43 16 37 H 0.08 0.98 8.01 -51.93 -0.42 0.56 16 38 H 0.17 2.01 7.65 -52.48 -0.40 1.61 16 39 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.15 1.68 8.06 -52.49 -0.42 1.25 16 42 H 0.19 2.41 2.89 -54.31 -0.16 2.26 16 43 H 0.08 1.25 6.56 -51.93 -0.34 0.91 16 44 H 0.07 0.99 6.79 -51.93 -0.35 0.64 16 45 H 0.37 7.26 3.12 -40.82 -0.13 7.13 16 46 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 LS Contribution 370.14 15.07 5.58 5.58 Total: -1.00 -29.85 370.14 -8.42 -38.27 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -5.91 Total: 10.81 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -3.16 Total: 0.60 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -0.29 Total: -61.56 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.71 Total: 15.29 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.85 -8.42 -38.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996042787.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.802 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds