Wall clock time and date at job start Tue Mar 31 2020 23:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 110.88459 * 2 1 4 4 C 1.55131 * 111.19669 * 236.06835 * 2 1 3 5 5 N 1.47418 * 104.71973 * 279.19181 * 4 2 1 6 6 C 1.34777 * 125.64779 * 155.81562 * 5 4 2 7 7 O 1.21546 * 120.00083 * 4.78072 * 6 5 4 8 8 C 1.47867 * 120.00065 * 184.77915 * 6 5 4 9 9 C 1.40637 * 120.26233 * 172.24391 * 8 6 5 10 10 N 1.30853 * 121.66015 * 179.97438 * 9 8 6 11 11 C 1.33589 * 121.58121 * 0.02562 * 10 9 8 12 12 C 1.40637 * 121.62401 * 180.02562 * 11 10 9 13 13 N 1.31156 * 120.03636 * 179.97438 * 12 11 10 14 14 C 1.32487 * 122.89382 * 359.97438 * 13 12 11 15 15 C 1.36321 * 121.71155 * 359.97438 * 14 13 12 16 16 C 1.40596 * 118.64893 * 0.02562 * 15 14 13 17 17 C 1.38996 * 120.26000 * 352.21674 * 8 6 5 18 18 C 1.47020 * 108.70720 * 335.55013 * 5 4 2 19 19 C 1.54330 * 107.26890 * 1.28900 * 18 5 4 20 20 H 1.08998 * 110.72080 * 263.82763 * 19 18 5 21 21 N 1.46503 * 110.72133 * 140.55319 * 19 18 5 22 22 C 1.36936 * 119.99660 * 86.45471 * 21 19 18 23 23 H 1.08006 * 120.00167 * 0.02562 * 22 21 19 24 24 C 1.38810 * 119.99747 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99735 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 120.00340 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47338 * 89.99998 * 26 24 22 28 28 H 1.48496 * 109.47222 * 210.00292 * 26 24 22 29 29 H 1.48507 * 109.46732 * 329.99928 * 26 24 22 30 30 H 1.08999 * 109.47205 * 296.11825 * 1 2 3 31 31 H 1.09001 * 109.46678 * 56.12470 * 1 2 3 32 32 H 1.09001 * 109.46680 * 176.11865 * 1 2 3 33 33 H 1.09001 * 109.47388 * 183.87910 * 3 2 1 34 34 H 1.09006 * 109.47001 * 303.87818 * 3 2 1 35 35 H 1.09001 * 109.47086 * 63.87685 * 3 2 1 36 36 H 1.08997 * 110.49674 * 160.35010 * 4 2 1 37 37 H 1.09007 * 110.34187 * 37.95274 * 4 2 1 38 38 H 1.08003 * 119.16860 * 359.94663 * 9 8 6 39 39 H 1.07996 * 119.98172 * 359.97438 * 12 11 10 40 40 H 1.07996 * 119.14641 * 179.97438 * 14 13 12 41 41 H 1.07993 * 120.67627 * 179.97438 * 15 14 13 42 42 H 1.07997 * 121.10827 * 0.02562 * 17 8 6 43 43 H 1.08998 * 109.88432 * 120.70566 * 18 5 4 44 44 H 1.08996 * 109.88783 * 241.71766 * 18 5 4 45 45 H 0.96998 * 120.00006 * 266.45946 * 21 19 18 46 46 H 0.96998 * 119.99943 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0909 -0.8074 -1.2000 5 7 2.0140 -2.2161 -0.7725 6 6 1.9473 -3.2834 -1.5928 7 8 2.0349 -3.1319 -2.7956 8 6 1.7676 -4.6387 -1.0295 9 6 1.5343 -5.7344 -1.8797 10 7 1.3720 -6.9452 -1.4108 11 6 1.4193 -7.2002 -0.1003 12 6 1.2454 -8.5012 0.4045 13 7 1.2984 -8.7163 1.6972 14 6 1.5128 -7.7511 2.5791 15 6 1.6949 -6.4561 2.1939 16 6 1.6515 -6.1482 0.8228 17 6 1.8283 -4.8399 0.3445 18 6 2.0286 -2.2643 0.6969 19 6 2.0862 -0.8074 1.2026 20 1 3.1133 -0.5154 1.4212 21 7 1.2342 -0.6339 2.3817 22 6 1.7296 -0.9027 3.6297 23 1 2.7484 -1.2422 3.7448 24 6 0.9222 -0.7389 4.7469 25 7 1.3982 -0.9978 5.9465 26 14 -0.8401 -0.1524 4.5480 27 1 -1.7360 -1.3247 4.3800 28 1 -1.2465 0.6123 5.7542 29 1 -0.9388 0.7215 3.3513 30 1 -0.3633 0.4524 0.9227 31 1 -0.3633 0.5728 -0.8533 32 1 -0.3633 -1.0253 -0.0696 33 1 3.1630 1.4035 -0.0695 34 1 1.6698 1.9732 -0.8532 35 1 1.7822 1.9303 0.9227 36 1 3.1254 -0.5271 -1.3985 37 1 1.4765 -0.6457 -2.0858 38 1 1.4877 -5.5723 -2.9465 39 1 1.0681 -9.3237 -0.2726 40 1 1.5442 -7.9965 3.6303 41 1 1.8681 -5.6824 2.9271 42 1 2.0060 -4.0175 1.0216 43 1 1.1220 -2.7476 1.0609 44 1 2.9049 -2.8135 1.0411 45 1 0.3193 -0.3287 2.2784 46 1 0.8342 -0.8830 6.7272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996042787.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:27 Heat of formation + Delta-G solvation = 57.133704 kcal Electronic energy + Delta-G solvation = -29898.923642 eV Core-core repulsion = 25982.207463 eV Total energy + Delta-G solvation = -3916.716179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.53548 -41.42629 -39.67842 -38.71169 -36.12151 -35.44532 -34.32674 -33.11942 -32.68002 -31.52853 -29.77548 -28.36373 -27.86085 -26.64224 -25.63340 -25.28194 -23.79402 -22.94782 -21.40513 -20.55559 -19.78362 -19.45998 -18.69153 -18.13097 -17.56092 -17.26001 -16.82501 -16.54661 -16.17512 -16.06776 -15.72875 -15.32667 -15.29446 -15.10795 -14.95415 -14.67673 -14.31358 -14.19935 -13.93023 -13.74810 -13.61931 -13.49837 -13.38533 -13.03365 -12.98823 -12.82141 -12.55925 -12.17838 -12.00877 -11.96496 -11.87428 -11.64728 -11.47533 -11.32088 -11.07007 -10.92405 -10.54888 -10.52831 -9.78470 -9.60542 -9.34492 -8.00091 -5.34385 -1.12719 -0.67231 0.57686 1.33805 1.38505 1.39420 1.47268 1.72647 2.09241 2.48542 2.89016 2.90556 3.08648 3.23732 3.29983 3.36808 3.44322 3.52758 3.57125 3.59630 3.68699 3.87313 4.02901 4.14566 4.18371 4.23517 4.29407 4.34230 4.44438 4.58186 4.62472 4.66848 4.75591 4.77572 4.82427 4.91740 4.94657 5.01479 5.05419 5.12524 5.17203 5.21601 5.35243 5.43780 5.48404 5.81184 6.22608 6.26585 6.47706 6.78854 6.86947 7.09121 7.83457 8.01337 9.20273 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009222 B = 0.004534 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.580146 B = 6173.538356 C = 8607.615673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.080 4.080 3 C -0.128 4.128 4 C 0.121 3.879 5 N -0.600 5.600 6 C 0.578 3.422 7 O -0.562 6.562 8 C -0.176 4.176 9 C 0.179 3.821 10 N -0.467 5.467 11 C 0.066 3.934 12 C 0.155 3.845 13 N -0.478 5.478 14 C 0.069 3.931 15 C -0.133 4.133 16 C -0.099 4.099 17 C -0.046 4.046 18 C 0.067 3.933 19 C 0.177 3.823 20 H 0.076 0.924 21 N -0.737 5.737 22 C -0.226 4.226 23 H 0.070 0.930 24 C -0.049 4.049 25 N -0.976 5.976 26 Si 0.932 3.068 27 H -0.283 1.283 28 H -0.302 1.302 29 H -0.250 1.250 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.187 0.813 39 H 0.195 0.805 40 H 0.186 0.814 41 H 0.159 0.841 42 H 0.189 0.811 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.370 0.630 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.113 -5.127 -13.925 14.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.081 4.081 3 C -0.186 4.186 4 C -0.001 4.001 5 N -0.331 5.331 6 C 0.367 3.633 7 O -0.442 6.442 8 C -0.183 4.183 9 C 0.004 3.996 10 N -0.176 5.176 11 C -0.057 4.057 12 C -0.018 4.018 13 N -0.186 5.186 14 C -0.074 4.074 15 C -0.153 4.153 16 C -0.106 4.106 17 C -0.071 4.071 18 C -0.058 4.058 19 C 0.067 3.933 20 H 0.094 0.906 21 N -0.381 5.381 22 C -0.357 4.357 23 H 0.088 0.912 24 C -0.241 4.241 25 N -0.626 5.626 26 Si 0.760 3.240 27 H -0.209 1.209 28 H -0.229 1.229 29 H -0.175 1.175 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.203 0.797 39 H 0.211 0.789 40 H 0.203 0.797 41 H 0.176 0.824 42 H 0.205 0.795 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.206 0.794 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.036 -6.728 -14.426 15.918 hybrid contribution -0.807 1.769 0.946 2.162 sum -0.771 -4.959 -13.480 14.384 Atomic orbital electron populations 1.21714 0.93835 1.01696 1.02173 1.22024 0.96244 0.96413 0.93451 1.21656 1.01419 0.93043 1.02434 1.22509 1.02146 0.78130 0.97334 1.48327 1.70728 1.06814 1.07240 1.17705 0.76782 0.83458 0.85332 1.90756 1.52636 1.86015 1.14836 1.21009 1.07114 0.95390 0.94753 1.23324 0.89297 0.85593 1.01378 1.68004 1.13776 1.22370 1.13433 1.20351 0.99369 0.96042 0.89899 1.23465 0.92613 0.93983 0.91713 1.67524 1.11134 1.36924 1.03067 1.22743 0.95547 0.88246 1.00817 1.22294 0.98933 0.99671 0.94390 1.19183 1.01210 0.94392 0.95827 1.23752 0.89581 0.97808 0.95979 1.23508 1.01605 1.02038 0.78634 1.21410 0.95319 0.90713 0.85862 0.90592 1.42834 1.12860 1.80593 1.01771 1.19028 0.97494 1.35906 0.83295 0.91247 1.25273 1.01371 1.02557 0.94932 1.69840 1.37589 1.56990 0.98176 0.85780 0.82137 0.78604 0.77452 1.20914 1.22893 1.17491 0.93089 0.90270 0.93426 0.91365 0.90531 0.93022 0.89511 0.89677 0.79657 0.78864 0.79747 0.82356 0.79505 0.90580 0.90062 0.79400 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 7.94 71.98 0.57 -2.73 16 2 C -0.08 -1.89 0.87 -50.71 -0.04 -1.93 16 3 C -0.13 -2.63 8.68 71.98 0.62 -2.01 16 4 C 0.12 2.70 5.83 86.93 0.51 3.20 16 5 N -0.60 -15.35 3.31 -819.15 -2.71 -18.06 16 6 C 0.58 16.15 7.81 86.79 0.68 16.83 16 7 O -0.56 -17.97 16.67 -3.86 -0.06 -18.04 16 8 C -0.18 -4.62 5.89 -19.96 -0.12 -4.74 16 9 C 0.18 4.48 10.73 85.42 0.92 5.39 16 10 N -0.47 -12.06 10.33 -187.60 -1.94 -13.99 16 11 C 0.07 1.71 6.62 40.36 0.27 1.97 16 12 C 0.16 3.52 11.25 85.38 0.96 4.48 16 13 N -0.48 -11.33 10.28 -195.40 -2.01 -13.34 16 14 C 0.07 1.51 11.08 84.15 0.93 2.44 16 15 C -0.13 -3.10 9.88 22.40 0.22 -2.88 16 16 C -0.10 -2.57 5.75 -21.27 -0.12 -2.69 16 17 C -0.05 -1.17 8.48 22.98 0.19 -0.98 16 18 C 0.07 1.82 4.31 86.73 0.37 2.19 16 19 C 0.18 5.26 2.85 46.18 0.13 5.39 16 20 H 0.08 2.33 8.02 -2.39 -0.02 2.31 16 21 N -0.74 -28.20 4.88 -317.31 -1.55 -29.75 16 22 C -0.23 -10.98 10.46 84.03 0.88 -10.10 16 23 H 0.07 3.66 8.06 -2.91 -0.02 3.64 16 24 C -0.05 -2.58 5.50 84.86 0.47 -2.11 16 25 N -0.98 -57.22 13.97 21.65 0.30 -56.91 16 26 Si 0.93 41.24 27.74 68.60 1.90 43.14 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 28 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 29 H -0.25 -9.85 6.52 99.48 0.65 -9.21 16 30 H 0.05 1.39 6.34 -2.39 -0.02 1.37 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.22 7.91 -2.39 -0.02 1.20 16 33 H 0.07 1.27 8.07 -2.39 -0.02 1.25 16 34 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.09 1.74 7.99 -2.39 -0.02 1.72 16 37 H 0.08 1.86 8.01 -2.38 -0.02 1.84 16 38 H 0.19 4.08 7.65 -2.91 -0.02 4.06 16 39 H 0.19 3.32 8.06 -2.91 -0.02 3.30 16 40 H 0.19 3.04 8.06 -2.91 -0.02 3.02 16 41 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 42 H 0.19 4.70 2.89 -4.62 -0.01 4.69 16 43 H 0.08 2.21 6.56 -2.39 -0.02 2.19 16 44 H 0.08 2.10 6.79 -2.39 -0.02 2.08 16 45 H 0.37 13.99 3.12 -92.71 -0.29 13.70 16 46 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -63.91 370.14 2.05 -61.86 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.67 Total: 33.36 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 7.44 Total: 11.73 kcal Atomic # 7 Polarization: -124.15 SS G_CDS: -7.90 Total: -132.05 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.06 Total: -18.04 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 1.90 Total: 43.14 kcal Total: -63.91 2.05 -61.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996042787.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.995 kcal (2) G-P(sol) polarization free energy of solvation -63.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds