Wall clock time and date at job start Tue Mar 31 2020 23:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 110.88909 * 2 1 4 4 C 1.55137 * 111.18859 * 236.07077 * 2 1 3 5 5 N 1.47430 * 104.72085 * 279.19241 * 4 2 1 6 6 C 1.34777 * 125.64605 * 155.81745 * 5 4 2 7 7 O 1.21502 * 119.99742 * 359.71732 * 6 5 4 8 8 C 1.48275 * 119.99782 * 179.71379 * 6 5 4 9 9 C 1.40371 * 119.18536 * 180.02562 * 8 6 5 10 10 C 1.36553 * 119.82552 * 180.02562 * 9 8 6 11 11 C 1.40555 * 118.05839 * 0.02562 * 10 9 8 12 12 C 1.40521 * 122.20141 * 180.28275 * 11 10 9 13 13 C 1.36256 * 118.68033 * 180.26112 * 12 11 10 14 14 N 1.32588 * 121.80237 * 359.44036 * 13 12 11 15 15 C 1.31117 * 122.87843 * 0.29376 * 14 13 12 16 16 C 1.40859 * 119.95578 * 359.97438 * 15 14 13 17 17 N 1.31894 * 119.18836 * 0.02562 * 8 6 5 18 18 C 1.47017 * 108.70287 * 335.55293 * 5 4 2 19 19 C 1.54321 * 107.27482 * 1.28838 * 18 5 4 20 20 H 1.08998 * 110.72486 * 140.73284 * 19 18 5 21 21 N 1.46505 * 110.72200 * 263.83355 * 19 18 5 22 22 C 1.36937 * 119.99541 * 273.54553 * 21 19 18 23 23 H 1.08002 * 120.00235 * 359.97438 * 22 21 19 24 24 C 1.38815 * 119.99855 * 179.97438 * 22 21 19 25 25 N 1.31614 * 120.00132 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99912 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47050 * 89.99818 * 26 24 22 28 28 H 1.48498 * 109.47178 * 209.99569 * 26 24 22 29 29 H 1.48503 * 109.47259 * 330.00011 * 26 24 22 30 30 H 1.09001 * 109.46272 * 296.11341 * 1 2 3 31 31 H 1.08990 * 109.46958 * 56.11316 * 1 2 3 32 32 H 1.08994 * 109.47503 * 176.11768 * 1 2 3 33 33 H 1.09002 * 109.47089 * 183.88203 * 3 2 1 34 34 H 1.08995 * 109.47376 * 303.88647 * 3 2 1 35 35 H 1.09002 * 109.46722 * 63.88843 * 3 2 1 36 36 H 1.09002 * 110.49726 * 160.35073 * 4 2 1 37 37 H 1.09004 * 110.34154 * 37.95805 * 4 2 1 38 38 H 1.08001 * 120.08727 * 0.02562 * 9 8 6 39 39 H 1.08002 * 120.97405 * 179.97438 * 10 9 8 40 40 H 1.07998 * 120.66053 * 0.02562 * 12 11 10 41 41 H 1.07996 * 119.10004 * 179.73083 * 13 12 11 42 42 H 1.08000 * 120.02460 * 180.02562 * 15 14 13 43 43 H 1.09002 * 109.88091 * 120.70377 * 18 5 4 44 44 H 1.09005 * 109.88189 * 241.71583 * 18 5 4 45 45 H 0.96994 * 120.00116 * 93.53973 * 21 19 18 46 46 H 0.96998 * 120.00263 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0756 1.4294 0.0000 4 6 2.0908 -0.8074 -1.2002 5 7 2.0138 -2.2162 -0.7727 6 6 1.9469 -3.2835 -1.5930 7 8 1.9417 -3.1244 -2.7976 8 6 1.8797 -4.6517 -1.0255 9 6 1.8111 -5.7510 -1.8957 10 6 1.7482 -7.0168 -1.3872 11 6 1.7544 -7.1690 0.0101 12 6 1.6987 -8.4307 0.6262 13 6 1.7034 -8.4946 1.9872 14 7 1.7698 -7.4036 2.7377 15 6 1.8295 -6.1950 2.2329 16 6 1.8253 -6.0153 0.8359 17 7 1.8859 -4.8057 0.2843 18 6 2.0285 -2.2645 0.6966 19 6 2.0862 -0.8077 1.2024 20 1 1.4549 -0.6793 2.0817 21 7 3.4668 -0.4152 1.4962 22 6 4.0067 -0.6798 2.7265 23 1 3.4147 -1.1774 3.4804 24 6 5.3150 -0.3085 3.0047 25 7 6.0367 0.2975 2.0859 26 14 6.0513 -0.6688 4.6832 27 1 6.6975 -2.0057 4.6637 28 1 7.0646 0.3659 5.0118 29 1 4.9773 -0.6531 5.7087 30 1 -0.3632 0.4524 0.9228 31 1 -0.3633 0.5729 -0.8530 32 1 -0.3634 -1.0252 -0.0696 33 1 3.1631 1.4033 -0.0696 34 1 1.6699 1.9732 -0.8531 35 1 1.7825 1.9301 0.9228 36 1 3.1253 -0.5272 -1.3987 37 1 1.4764 -0.6456 -2.0859 38 1 1.8080 -5.5962 -2.9645 39 1 1.6945 -7.8758 -2.0395 40 1 1.6493 -9.3317 0.0327 41 1 1.6563 -9.4606 2.4678 42 1 1.8828 -5.3379 2.8878 43 1 1.1218 -2.7476 1.0607 44 1 2.9049 -2.8138 1.0408 45 1 3.9984 0.0319 0.8192 46 1 6.9510 0.5566 2.2801 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996044577.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:48 Heat of formation + Delta-G solvation = 59.266958 kcal Electronic energy + Delta-G solvation = -29857.475799 eV Core-core repulsion = 25940.852125 eV Total energy + Delta-G solvation = -3916.623674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.47612 -39.99031 -38.44640 -37.45928 -34.29986 -33.80408 -33.07555 -31.70867 -30.72573 -30.66870 -27.90348 -26.95763 -26.62349 -25.26388 -24.31739 -23.72296 -22.87329 -21.57193 -20.18937 -18.83916 -18.38956 -17.75066 -17.30755 -17.12446 -16.16592 -15.83472 -15.40608 -15.06746 -14.90716 -14.67965 -14.48751 -14.17476 -13.88401 -13.73729 -13.65012 -13.28398 -12.90414 -12.81981 -12.52584 -12.40943 -12.31840 -12.08718 -11.79866 -11.60601 -11.46061 -11.07564 -10.97370 -10.89466 -10.67043 -10.51523 -10.28130 -10.19718 -9.81716 -9.77506 -9.62215 -9.53969 -9.52943 -8.92132 -8.70651 -8.22936 -7.01064 -5.80299 -3.09435 -0.14480 0.34323 1.57136 2.35404 3.08824 3.26030 3.42407 3.48181 3.49315 3.80675 3.91423 4.13412 4.23573 4.38539 4.46815 4.54998 4.55753 4.83068 4.92559 5.03115 5.14158 5.25664 5.27505 5.40606 5.50574 5.50850 5.58098 5.66632 5.79054 5.82793 5.85570 5.90332 5.97856 6.08707 6.16085 6.21529 6.28603 6.29774 6.36878 6.40775 6.48003 6.64632 6.69781 6.91167 6.94659 7.36236 7.68223 7.70391 7.80251 8.27856 8.37878 9.49777 10.04812 10.39589 11.42034 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008917 B = 0.004347 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.265876 B = 6440.385957 C = 8606.869485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.089 4.089 3 C -0.125 4.125 4 C 0.118 3.882 5 N -0.578 5.578 6 C 0.573 3.427 7 O -0.548 6.548 8 C 0.124 3.876 9 C -0.105 4.105 10 C -0.071 4.071 11 C -0.065 4.065 12 C -0.152 4.152 13 C 0.082 3.918 14 N -0.478 5.478 15 C 0.183 3.817 16 C 0.063 3.937 17 N -0.407 5.407 18 C 0.088 3.912 19 C 0.173 3.827 20 H 0.070 0.930 21 N -0.713 5.713 22 C -0.241 4.241 23 H 0.072 0.928 24 C -0.009 4.009 25 N -0.931 5.931 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.281 1.281 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.154 0.846 39 H 0.149 0.851 40 H 0.141 0.859 41 H 0.158 0.842 42 H 0.179 0.821 43 H 0.062 0.938 44 H 0.085 0.915 45 H 0.386 0.614 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.386 -13.080 -6.074 19.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.091 4.091 3 C -0.183 4.183 4 C -0.004 4.004 5 N -0.308 5.308 6 C 0.360 3.640 7 O -0.426 6.426 8 C -0.031 4.031 9 C -0.127 4.127 10 C -0.097 4.097 11 C -0.072 4.072 12 C -0.173 4.173 13 C -0.061 4.061 14 N -0.187 5.187 15 C 0.009 3.991 16 C -0.062 4.062 17 N -0.120 5.120 18 C -0.037 4.037 19 C 0.061 3.939 20 H 0.088 0.912 21 N -0.354 5.354 22 C -0.372 4.372 23 H 0.090 0.910 24 C -0.205 4.205 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.206 1.206 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.172 0.828 39 H 0.166 0.834 40 H 0.159 0.841 41 H 0.175 0.825 42 H 0.196 0.804 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.222 0.778 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.280 -12.639 -5.027 18.325 hybrid contribution 0.785 -0.919 -0.751 1.423 sum -11.495 -13.558 -5.778 18.691 Atomic orbital electron populations 1.21674 0.93952 1.01445 1.01602 1.22059 0.95291 0.96080 0.95659 1.21575 1.02106 0.93527 1.01058 1.22429 1.01331 0.79376 0.97231 1.48286 1.68014 1.05679 1.08792 1.17464 0.78272 0.82841 0.85449 1.90757 1.52733 1.85394 1.13720 1.21484 0.97540 0.94830 0.89206 1.21881 0.96692 0.91709 1.02382 1.21373 0.97054 0.97952 0.93359 1.19096 0.98571 0.94712 0.94821 1.21872 1.02195 0.96802 0.96407 1.22337 0.95584 0.97343 0.90794 1.67551 1.11812 0.98599 1.40744 1.23359 0.90045 0.95300 0.90381 1.20020 1.01548 0.88599 0.96062 1.68218 1.07938 1.23749 1.12056 1.23376 1.02117 1.01065 0.77153 1.21359 0.88577 0.89716 0.94236 0.91215 1.42454 1.08269 1.69960 1.14692 1.19216 0.95428 1.32072 0.90498 0.90990 1.24714 0.96853 1.01126 0.97810 1.69649 1.09443 1.45574 1.33188 0.86233 0.78919 0.77398 0.83885 1.21790 1.21857 1.20646 0.92239 0.92840 0.92911 0.91178 0.93651 0.92027 0.90812 0.90953 0.82840 0.83351 0.84111 0.82500 0.80418 0.91929 0.89668 0.77844 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 8.59 37.16 0.32 -1.36 16 2 C -0.09 -1.39 0.83 -152.23 -0.13 -1.51 16 3 C -0.12 -1.95 8.22 37.16 0.31 -1.64 16 4 C 0.12 1.96 5.82 -2.40 -0.01 1.94 16 5 N -0.58 -9.99 3.31 -171.32 -0.57 -10.55 16 6 C 0.57 9.96 7.84 -12.13 -0.10 9.86 16 7 O -0.55 -10.38 16.53 5.36 0.09 -10.29 16 8 C 0.12 1.89 6.73 -82.91 -0.56 1.33 16 9 C -0.10 -1.27 9.54 -39.39 -0.38 -1.64 16 10 C -0.07 -0.70 9.93 -39.32 -0.39 -1.09 16 11 C -0.06 -0.74 5.75 -106.70 -0.61 -1.35 16 12 C -0.15 -1.36 9.88 -39.44 -0.39 -1.75 16 13 C 0.08 0.79 11.07 -17.94 -0.20 0.59 16 14 N -0.48 -5.92 10.28 -13.05 -0.13 -6.06 16 15 C 0.18 2.36 11.26 -16.87 -0.19 2.17 16 16 C 0.06 0.86 6.62 -84.88 -0.56 0.30 16 17 N -0.41 -6.18 6.77 -7.51 -0.05 -6.23 16 18 C 0.09 1.55 4.81 -3.07 -0.01 1.54 16 19 C 0.17 3.18 2.86 -66.09 -0.19 2.99 16 20 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 21 N -0.71 -16.49 4.61 -51.65 -0.24 -16.72 16 22 C -0.24 -6.28 9.98 -15.06 -0.15 -6.43 16 23 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 25 N -0.93 -27.16 13.06 55.49 0.72 -26.43 16 26 Si 0.90 21.83 29.55 -169.99 -5.02 16.80 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.70 7.91 -51.93 -0.41 0.29 16 33 H 0.07 1.27 6.38 -51.93 -0.33 0.94 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.33 7.99 -51.93 -0.41 0.91 16 37 H 0.07 1.13 7.95 -51.93 -0.41 0.72 16 38 H 0.15 1.67 7.60 -52.49 -0.40 1.27 16 39 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.18 2.13 8.06 -52.49 -0.42 1.70 16 43 H 0.06 1.01 7.40 -51.93 -0.38 0.63 16 44 H 0.09 1.73 7.42 -51.93 -0.39 1.35 16 45 H 0.39 9.60 6.10 -40.82 -0.25 9.35 16 46 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 378.40 15.07 5.70 5.70 Total: -1.00 -31.55 378.40 -9.17 -40.73 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -6.33 Total: 9.45 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -3.34 Total: 3.61 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: -0.27 Total: -66.00 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.55 -9.17 -40.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996044577.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.993 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds