Wall clock time and date at job start Tue Mar 31 2020 23:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 110.88909 * 2 1 4 4 C 1.55137 * 111.18859 * 236.07077 * 2 1 3 5 5 N 1.47430 * 104.72085 * 279.19241 * 4 2 1 6 6 C 1.34777 * 125.64605 * 155.81745 * 5 4 2 7 7 O 1.21502 * 119.99742 * 359.71732 * 6 5 4 8 8 C 1.48275 * 119.99782 * 179.71379 * 6 5 4 9 9 C 1.40371 * 119.18536 * 180.02562 * 8 6 5 10 10 C 1.36553 * 119.82552 * 180.02562 * 9 8 6 11 11 C 1.40555 * 118.05839 * 0.02562 * 10 9 8 12 12 C 1.40521 * 122.20141 * 180.28275 * 11 10 9 13 13 C 1.36256 * 118.68033 * 180.26112 * 12 11 10 14 14 N 1.32588 * 121.80237 * 359.44036 * 13 12 11 15 15 C 1.31117 * 122.87843 * 0.29376 * 14 13 12 16 16 C 1.40859 * 119.95578 * 359.97438 * 15 14 13 17 17 N 1.31894 * 119.18836 * 0.02562 * 8 6 5 18 18 C 1.47017 * 108.70287 * 335.55293 * 5 4 2 19 19 C 1.54321 * 107.27482 * 1.28838 * 18 5 4 20 20 H 1.08998 * 110.72486 * 140.73284 * 19 18 5 21 21 N 1.46505 * 110.72200 * 263.83355 * 19 18 5 22 22 C 1.36937 * 119.99541 * 273.54553 * 21 19 18 23 23 H 1.08002 * 120.00235 * 359.97438 * 22 21 19 24 24 C 1.38815 * 119.99855 * 179.97438 * 22 21 19 25 25 N 1.31614 * 120.00132 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99912 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47050 * 89.99818 * 26 24 22 28 28 H 1.48498 * 109.47178 * 209.99569 * 26 24 22 29 29 H 1.48503 * 109.47259 * 330.00011 * 26 24 22 30 30 H 1.09001 * 109.46272 * 296.11341 * 1 2 3 31 31 H 1.08990 * 109.46958 * 56.11316 * 1 2 3 32 32 H 1.08994 * 109.47503 * 176.11768 * 1 2 3 33 33 H 1.09002 * 109.47089 * 183.88203 * 3 2 1 34 34 H 1.08995 * 109.47376 * 303.88647 * 3 2 1 35 35 H 1.09002 * 109.46722 * 63.88843 * 3 2 1 36 36 H 1.09002 * 110.49726 * 160.35073 * 4 2 1 37 37 H 1.09004 * 110.34154 * 37.95805 * 4 2 1 38 38 H 1.08001 * 120.08727 * 0.02562 * 9 8 6 39 39 H 1.08002 * 120.97405 * 179.97438 * 10 9 8 40 40 H 1.07998 * 120.66053 * 0.02562 * 12 11 10 41 41 H 1.07996 * 119.10004 * 179.73083 * 13 12 11 42 42 H 1.08000 * 120.02460 * 180.02562 * 15 14 13 43 43 H 1.09002 * 109.88091 * 120.70377 * 18 5 4 44 44 H 1.09005 * 109.88189 * 241.71583 * 18 5 4 45 45 H 0.96994 * 120.00116 * 93.53973 * 21 19 18 46 46 H 0.96998 * 120.00263 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0756 1.4294 0.0000 4 6 2.0908 -0.8074 -1.2002 5 7 2.0138 -2.2162 -0.7727 6 6 1.9469 -3.2835 -1.5930 7 8 1.9417 -3.1244 -2.7976 8 6 1.8797 -4.6517 -1.0255 9 6 1.8111 -5.7510 -1.8957 10 6 1.7482 -7.0168 -1.3872 11 6 1.7544 -7.1690 0.0101 12 6 1.6987 -8.4307 0.6262 13 6 1.7034 -8.4946 1.9872 14 7 1.7698 -7.4036 2.7377 15 6 1.8295 -6.1950 2.2329 16 6 1.8253 -6.0153 0.8359 17 7 1.8859 -4.8057 0.2843 18 6 2.0285 -2.2645 0.6966 19 6 2.0862 -0.8077 1.2024 20 1 1.4549 -0.6793 2.0817 21 7 3.4668 -0.4152 1.4962 22 6 4.0067 -0.6798 2.7265 23 1 3.4147 -1.1774 3.4804 24 6 5.3150 -0.3085 3.0047 25 7 6.0367 0.2975 2.0859 26 14 6.0513 -0.6688 4.6832 27 1 6.6975 -2.0057 4.6637 28 1 7.0646 0.3659 5.0118 29 1 4.9773 -0.6531 5.7087 30 1 -0.3632 0.4524 0.9228 31 1 -0.3633 0.5729 -0.8530 32 1 -0.3634 -1.0252 -0.0696 33 1 3.1631 1.4033 -0.0696 34 1 1.6699 1.9732 -0.8531 35 1 1.7825 1.9301 0.9228 36 1 3.1253 -0.5272 -1.3987 37 1 1.4764 -0.6456 -2.0859 38 1 1.8080 -5.5962 -2.9645 39 1 1.6945 -7.8758 -2.0395 40 1 1.6493 -9.3317 0.0327 41 1 1.6563 -9.4606 2.4678 42 1 1.8828 -5.3379 2.8878 43 1 1.1218 -2.7476 1.0607 44 1 2.9049 -2.8138 1.0408 45 1 3.9984 0.0319 0.8192 46 1 6.9510 0.5566 2.2801 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996044577.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:47 Heat of formation + Delta-G solvation = 39.579815 kcal Electronic energy + Delta-G solvation = -29858.329498 eV Core-core repulsion = 25940.852125 eV Total energy + Delta-G solvation = -3917.477373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.43012 -41.28121 -39.63984 -38.62751 -35.78069 -35.12952 -34.38004 -32.66190 -32.57143 -31.53587 -29.44551 -28.16825 -27.95954 -26.33796 -25.65522 -25.15082 -23.79795 -23.02011 -21.37935 -20.26559 -19.35194 -19.09586 -18.74126 -18.31605 -17.30749 -17.23879 -16.72234 -16.40008 -15.95593 -15.88292 -15.72730 -15.45288 -15.26542 -14.91218 -14.79858 -14.47500 -14.20893 -14.13514 -13.75871 -13.63820 -13.43090 -13.21985 -13.10559 -13.03038 -12.83101 -12.76163 -12.67228 -12.15670 -12.05646 -11.96716 -11.93808 -11.55933 -11.44066 -11.23712 -11.04179 -10.75797 -10.49018 -10.45339 -9.67502 -9.51953 -8.97146 -7.90689 -5.17976 -1.06178 -0.56146 0.69135 1.30535 1.48885 1.49735 1.57604 1.82769 2.16163 2.58215 2.74742 2.96916 3.29898 3.34265 3.41410 3.43962 3.58224 3.62178 3.73262 3.82767 3.91420 4.03468 4.09575 4.25731 4.34543 4.48754 4.51905 4.58477 4.61791 4.69315 4.72416 4.78144 4.81318 4.90384 5.01561 5.02800 5.05150 5.10102 5.13517 5.26182 5.27664 5.37706 5.41288 5.51703 5.56619 5.61912 6.30793 6.34519 6.44057 6.83848 6.95024 7.38602 8.12543 8.36249 9.32731 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008917 B = 0.004347 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.265876 B = 6440.385957 C = 8606.869485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.076 4.076 3 C -0.119 4.119 4 C 0.118 3.882 5 N -0.584 5.584 6 C 0.569 3.431 7 O -0.568 6.568 8 C 0.101 3.899 9 C -0.119 4.119 10 C -0.044 4.044 11 C -0.077 4.077 12 C -0.130 4.130 13 C 0.071 3.929 14 N -0.492 5.492 15 C 0.161 3.839 16 C 0.042 3.958 17 N -0.433 5.433 18 C 0.110 3.890 19 C 0.165 3.835 20 H 0.076 0.924 21 N -0.722 5.722 22 C -0.230 4.230 23 H 0.079 0.921 24 C -0.071 4.071 25 N -0.969 5.969 26 Si 0.963 3.037 27 H -0.295 1.295 28 H -0.299 1.299 29 H -0.266 1.266 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.085 0.915 38 H 0.163 0.837 39 H 0.198 0.802 40 H 0.187 0.813 41 H 0.192 0.808 42 H 0.171 0.829 43 H 0.077 0.923 44 H 0.053 0.947 45 H 0.375 0.625 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.411 -15.910 -6.435 22.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.078 4.078 3 C -0.176 4.176 4 C -0.004 4.004 5 N -0.313 5.313 6 C 0.357 3.643 7 O -0.449 6.449 8 C -0.053 4.053 9 C -0.140 4.140 10 C -0.070 4.070 11 C -0.084 4.084 12 C -0.150 4.150 13 C -0.072 4.072 14 N -0.201 5.201 15 C -0.012 4.012 16 C -0.083 4.083 17 N -0.146 5.146 18 C -0.015 4.015 19 C 0.054 3.946 20 H 0.094 0.906 21 N -0.362 5.362 22 C -0.362 4.362 23 H 0.097 0.903 24 C -0.263 4.263 25 N -0.620 5.620 26 Si 0.794 3.206 27 H -0.223 1.223 28 H -0.226 1.226 29 H -0.190 1.190 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.103 0.897 38 H 0.181 0.819 39 H 0.215 0.785 40 H 0.205 0.795 41 H 0.209 0.791 42 H 0.188 0.812 43 H 0.095 0.905 44 H 0.071 0.929 45 H 0.209 0.791 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.362 -15.481 -5.372 21.790 hybrid contribution 1.342 -0.215 -0.652 1.507 sum -13.020 -15.697 -6.024 21.265 Atomic orbital electron populations 1.21630 0.91221 1.01909 1.03157 1.22015 0.97163 0.95295 0.93295 1.21503 1.00134 0.93884 1.02129 1.22427 1.00326 0.79424 0.98242 1.48356 1.68290 1.06111 1.08556 1.17929 0.77379 0.83774 0.85265 1.90721 1.53684 1.85985 1.14469 1.21346 0.99656 0.94366 0.89901 1.21995 0.97791 0.91838 1.02423 1.21868 0.93610 0.98361 0.93117 1.19447 0.98430 0.94988 0.95528 1.22334 0.99136 0.97173 0.96371 1.22979 0.94903 0.97698 0.91571 1.67548 1.11682 0.99035 1.41860 1.23282 0.91830 0.95721 0.90401 1.20195 1.02483 0.89066 0.96598 1.68041 1.08933 1.25303 1.12299 1.22971 1.01318 0.99721 0.77535 1.21595 0.86402 0.90743 0.95830 0.90630 1.42587 1.10025 1.69936 1.13615 1.19601 0.95344 1.29856 0.91418 0.90269 1.25414 0.97665 1.02333 1.00913 1.69805 1.09339 1.47865 1.34982 0.85280 0.78162 0.76418 0.80777 1.22280 1.22626 1.19043 0.91102 0.90806 0.93067 0.94310 0.90806 0.92344 0.93159 0.89662 0.81940 0.78520 0.79530 0.79122 0.81181 0.90480 0.92864 0.79115 0.94317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.93 8.59 71.98 0.62 -2.31 16 2 C -0.08 -2.35 0.83 -50.71 -0.04 -2.39 16 3 C -0.12 -3.70 8.22 71.98 0.59 -3.11 16 4 C 0.12 3.97 5.82 86.93 0.51 4.48 16 5 N -0.58 -20.75 3.31 -814.24 -2.70 -23.44 16 6 C 0.57 20.24 7.84 86.91 0.68 20.92 16 7 O -0.57 -21.89 16.53 -3.72 -0.06 -21.95 16 8 C 0.10 3.11 6.73 42.33 0.28 3.39 16 9 C -0.12 -2.70 9.54 22.40 0.21 -2.49 16 10 C -0.04 -0.71 9.93 22.44 0.22 -0.49 16 11 C -0.08 -1.53 5.75 -21.21 -0.12 -1.66 16 12 C -0.13 -1.75 9.88 22.36 0.22 -1.53 16 13 C 0.07 1.14 11.07 84.12 0.93 2.07 16 14 N -0.49 -11.63 10.28 -195.21 -2.01 -13.64 16 15 C 0.16 4.21 11.26 85.44 0.96 5.17 16 16 C 0.04 1.13 6.62 40.54 0.27 1.40 16 17 N -0.43 -13.47 6.77 -177.68 -1.20 -14.67 16 18 C 0.11 3.99 4.81 86.73 0.42 4.40 16 19 C 0.16 6.16 2.86 46.18 0.13 6.29 16 20 H 0.08 2.75 8.03 -2.39 -0.02 2.73 16 21 N -0.72 -34.59 4.61 -317.31 -1.46 -36.06 16 22 C -0.23 -12.27 9.98 84.03 0.84 -11.43 16 23 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 24 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 25 N -0.97 -58.76 13.06 21.65 0.28 -58.48 16 26 Si 0.96 45.94 29.55 68.60 2.03 47.97 16 27 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 28 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 29 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.05 1.26 7.91 -2.39 -0.02 1.24 16 33 H 0.04 1.45 6.38 -2.39 -0.02 1.44 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.92 7.99 -2.39 -0.02 1.90 16 37 H 0.09 2.64 7.95 -2.39 -0.02 2.62 16 38 H 0.16 3.31 7.60 -2.91 -0.02 3.29 16 39 H 0.20 1.21 8.06 -2.91 -0.02 1.18 16 40 H 0.19 0.79 8.06 -2.91 -0.02 0.77 16 41 H 0.19 1.67 8.06 -2.91 -0.02 1.64 16 42 H 0.17 4.40 8.06 -2.91 -0.02 4.38 16 43 H 0.08 2.56 7.40 -2.39 -0.02 2.54 16 44 H 0.05 2.29 7.42 -2.38 -0.02 2.27 16 45 H 0.38 19.62 6.10 -92.71 -0.57 19.05 16 46 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -72.21 378.40 2.51 -69.70 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: 0.44 Total: 31.39 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 7.19 Total: 19.18 kcal Atomic # 7 Polarization: -139.20 SS G_CDS: -7.09 Total: -146.29 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.06 Total: -21.95 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -72.21 2.51 -69.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996044577.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.279 kcal (2) G-P(sol) polarization free energy of solvation -72.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds