Wall clock time and date at job start Tue Mar 31 2020 23:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 110.88987 * 2 1 4 4 C 1.55133 * 111.19297 * 236.06423 * 2 1 3 5 5 N 1.47424 * 104.72020 * 279.19178 * 4 2 1 6 6 C 1.34778 * 125.64195 * 155.81722 * 5 4 2 7 7 O 1.21527 * 120.00198 * 4.58852 * 6 5 4 8 8 C 1.48007 * 119.99952 * 184.58847 * 6 5 4 9 9 C 1.38893 * 121.16986 * 313.18384 * 8 6 5 10 10 C 1.39350 * 119.66842 * 180.26074 * 9 8 6 11 11 N 1.31105 * 121.90536 * 359.46626 * 10 9 8 12 12 C 1.33279 * 121.61802 * 0.25472 * 11 10 9 13 13 C 1.40830 * 121.92591 * 180.02562 * 12 11 10 14 14 C 1.36164 * 118.77831 * 179.97438 * 13 12 11 15 15 N 1.32544 * 121.95764 * 0.04365 * 14 13 12 16 16 C 1.31342 * 122.59853 * 359.97438 * 15 14 13 17 17 C 1.40078 * 119.87779 * 359.97438 * 16 15 14 18 18 C 1.47020 * 108.70875 * 335.55640 * 5 4 2 19 19 C 1.54329 * 107.26944 * 1.28473 * 18 5 4 20 20 H 1.08997 * 110.71823 * 140.55943 * 19 18 5 21 21 N 1.46500 * 110.71883 * 263.83202 * 19 18 5 22 22 C 1.36937 * 120.00250 * 273.54471 * 21 19 18 23 23 H 1.08001 * 119.99266 * 0.02562 * 22 21 19 24 24 C 1.38804 * 120.00202 * 180.02562 * 22 21 19 25 25 N 1.31624 * 120.00282 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99995 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47123 * 90.00294 * 26 24 22 28 28 H 1.48507 * 109.47143 * 210.00148 * 26 24 22 29 29 H 1.48500 * 109.47307 * 330.00316 * 26 24 22 30 30 H 1.08997 * 109.47129 * 296.12374 * 1 2 3 31 31 H 1.09003 * 109.46821 * 56.12246 * 1 2 3 32 32 H 1.08997 * 109.47285 * 176.11885 * 1 2 3 33 33 H 1.08995 * 109.47098 * 183.87542 * 3 2 1 34 34 H 1.08998 * 109.46644 * 303.88286 * 3 2 1 35 35 H 1.09002 * 109.46743 * 63.87485 * 3 2 1 36 36 H 1.09001 * 110.49335 * 160.35579 * 4 2 1 37 37 H 1.08997 * 110.34168 * 37.95959 * 4 2 1 38 38 H 1.08002 * 120.16644 * 0.02562 * 9 8 6 39 39 H 1.08004 * 119.04631 * 179.74527 * 10 9 8 40 40 H 1.08005 * 120.61371 * 359.96035 * 13 12 11 41 41 H 1.07991 * 119.02604 * 180.02562 * 14 13 12 42 42 H 1.08003 * 120.06068 * 179.97438 * 16 15 14 43 43 H 1.08999 * 109.88673 * 120.70162 * 18 5 4 44 44 H 1.09000 * 109.88064 * 241.71909 * 18 5 4 45 45 H 0.97000 * 119.99880 * 93.54687 * 21 19 18 46 46 H 0.96996 * 120.00289 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0756 1.4295 0.0000 4 6 2.0909 -0.8075 -1.2000 5 7 2.0139 -2.2162 -0.7723 6 6 1.9471 -3.2835 -1.5927 7 8 2.0312 -3.1317 -2.7955 8 6 1.7714 -4.6406 -1.0286 9 6 2.5373 -5.0777 0.0445 10 6 2.3495 -6.3637 0.5473 11 7 1.4574 -7.1815 0.0431 12 6 0.6847 -6.8260 -0.9830 13 6 -0.2760 -7.6990 -1.5293 14 6 -1.0315 -7.2692 -2.5774 15 7 -0.8877 -6.0578 -3.0956 16 6 -0.0128 -5.1916 -2.6381 17 6 0.8127 -5.5367 -1.5603 18 6 2.0284 -2.2644 0.6970 19 6 2.0861 -0.8075 1.2027 20 1 1.4523 -0.6784 2.0800 21 7 3.4666 -0.4151 1.4965 22 6 4.0065 -0.6795 2.7269 23 1 3.4146 -1.1777 3.4804 24 6 5.3144 -0.3072 3.0055 25 7 6.0355 0.3004 2.0872 26 14 6.0506 -0.6673 4.6841 27 1 6.6979 -2.0037 4.6644 28 1 7.0629 0.3683 5.0131 29 1 4.9763 -0.6527 5.7092 30 1 -0.3633 0.4525 0.9227 31 1 -0.3633 0.5729 -0.8532 32 1 -0.3634 -1.0253 -0.0696 33 1 3.1630 1.4033 -0.0695 34 1 1.6699 1.9731 -0.8532 35 1 1.7824 1.9302 0.9227 36 1 3.1254 -0.5273 -1.3984 37 1 1.4765 -0.6458 -2.0857 38 1 3.2772 -4.4256 0.4845 39 1 2.9534 -6.6947 1.3793 40 1 -0.4108 -8.6912 -1.1245 41 1 -1.7696 -7.9351 -2.9991 42 1 0.0700 -4.2151 -3.0920 43 1 1.1217 -2.7475 1.0611 44 1 2.9048 -2.8136 1.0412 45 1 3.9983 0.0321 0.8195 46 1 6.9493 0.5609 2.2820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996083395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:05 Heat of formation + Delta-G solvation = 54.578460 kcal Electronic energy + Delta-G solvation = -29896.665391 eV Core-core repulsion = 25979.838408 eV Total energy + Delta-G solvation = -3916.826983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.55063 -40.05841 -38.27164 -37.98910 -34.21116 -33.85786 -33.13535 -31.76104 -30.89493 -30.66785 -28.12127 -27.01599 -26.72429 -25.19055 -24.43539 -23.96077 -23.17455 -21.67515 -19.85443 -19.02919 -18.69880 -17.75410 -17.36199 -17.14421 -16.39665 -15.79793 -15.56429 -15.03291 -14.88371 -14.76643 -14.68349 -14.25585 -14.14627 -13.93956 -13.84423 -13.12047 -13.04805 -12.98107 -12.81150 -12.52059 -12.26610 -12.23161 -11.91943 -11.71715 -11.61932 -11.09303 -11.01698 -10.89389 -10.66055 -10.57116 -10.40229 -10.32611 -9.96041 -9.92715 -9.76142 -9.55035 -9.52334 -9.10439 -8.72546 -8.46389 -7.18014 -5.93729 -3.24683 -0.17591 0.46915 1.40776 2.58489 2.80308 2.99017 3.32389 3.38619 3.40552 3.84250 3.90517 4.17421 4.19273 4.36976 4.42950 4.48248 4.51354 4.73132 4.94489 4.96528 5.09381 5.12368 5.23049 5.32905 5.37852 5.49065 5.52379 5.56454 5.59855 5.65634 5.74592 5.77368 5.83716 6.01684 6.06383 6.11121 6.13724 6.15214 6.23527 6.27723 6.37966 6.40234 6.48101 6.64187 6.81076 7.50989 7.54137 7.56698 7.69464 8.05084 8.23765 9.36026 9.89385 10.24233 11.27983 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012920 B = 0.003566 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.611566 B = 7851.006230 C = 9331.323845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 C -0.125 4.125 4 C 0.120 3.880 5 N -0.591 5.591 6 C 0.567 3.433 7 O -0.535 6.535 8 C -0.031 4.031 9 C -0.145 4.145 10 C 0.157 3.843 11 N -0.470 5.470 12 C 0.155 3.845 13 C -0.146 4.146 14 C 0.090 3.910 15 N -0.488 5.488 16 C 0.171 3.829 17 C -0.135 4.135 18 C 0.064 3.936 19 C 0.180 3.820 20 H 0.072 0.928 21 N -0.711 5.711 22 C -0.251 4.251 23 H 0.072 0.928 24 C -0.005 4.005 25 N -0.927 5.927 26 Si 0.906 3.094 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.158 0.842 39 H 0.173 0.827 40 H 0.147 0.853 41 H 0.160 0.840 42 H 0.173 0.827 43 H 0.056 0.944 44 H 0.082 0.918 45 H 0.387 0.613 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.318 -9.107 -4.960 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.090 4.090 3 C -0.183 4.183 4 C -0.002 4.002 5 N -0.322 5.322 6 C 0.354 3.646 7 O -0.413 6.413 8 C -0.045 4.045 9 C -0.165 4.165 10 C -0.017 4.017 11 N -0.179 5.179 12 C 0.028 3.972 13 C -0.166 4.166 14 C -0.055 4.055 15 N -0.196 5.196 16 C -0.001 4.001 17 C -0.140 4.140 18 C -0.061 4.061 19 C 0.067 3.933 20 H 0.090 0.910 21 N -0.352 5.352 22 C -0.381 4.381 23 H 0.090 0.910 24 C -0.202 4.202 25 N -0.574 5.574 26 Si 0.737 3.263 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.176 0.824 39 H 0.190 0.810 40 H 0.165 0.835 41 H 0.177 0.823 42 H 0.190 0.810 43 H 0.074 0.926 44 H 0.100 0.900 45 H 0.223 0.777 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.000 -9.875 -5.868 17.348 hybrid contribution 1.535 0.359 1.238 2.004 sum -11.465 -9.515 -4.630 15.603 Atomic orbital electron populations 1.21691 0.93832 1.01471 1.01817 1.22070 0.95372 0.96197 0.95398 1.21580 1.02126 0.93389 1.01217 1.22425 1.01533 0.78949 0.97244 1.48334 1.69750 1.06039 1.08053 1.17656 0.77900 0.83139 0.85857 1.90795 1.51145 1.85459 1.13935 1.20322 0.95175 0.94269 0.94707 1.22784 1.00328 0.98253 0.95135 1.23195 0.92588 0.88970 0.96907 1.67879 1.05240 1.35162 1.09585 1.18874 0.94906 0.91022 0.92352 1.21711 0.96043 1.00806 0.98058 1.22334 0.97581 0.92646 0.92892 1.67624 1.19324 1.03183 1.29438 1.23445 0.87723 0.99010 0.89969 1.19562 0.99255 0.95384 0.99776 1.23554 1.01033 1.03441 0.78102 1.21215 0.88837 0.88813 0.94410 0.90997 1.42464 1.08122 1.69897 1.14754 1.19200 0.95506 1.32861 0.90564 0.90975 1.24747 0.96846 1.00752 0.97890 1.69649 1.09602 1.44910 1.33246 0.86220 0.78921 0.77500 0.83662 1.21624 1.21740 1.20654 0.92158 0.92638 0.92958 0.91124 0.93491 0.91960 0.90651 0.90806 0.82449 0.81000 0.83523 0.82256 0.81025 0.92553 0.89965 0.77667 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 8.59 37.16 0.32 -1.23 16 2 C -0.09 -1.26 0.83 -152.23 -0.13 -1.39 16 3 C -0.13 -1.82 8.22 37.16 0.31 -1.51 16 4 C 0.12 1.81 5.81 -2.41 -0.01 1.80 16 5 N -0.59 -9.05 3.31 -171.43 -0.57 -9.61 16 6 C 0.57 9.05 6.97 -12.26 -0.09 8.97 16 7 O -0.53 -9.76 15.69 5.34 0.08 -9.68 16 8 C -0.03 -0.45 5.47 -104.37 -0.57 -1.02 16 9 C -0.14 -1.81 8.64 -38.93 -0.34 -2.15 16 10 C 0.16 1.77 11.14 -17.45 -0.19 1.57 16 11 N -0.47 -6.05 10.33 -10.95 -0.11 -6.16 16 12 C 0.15 2.06 6.63 -84.88 -0.56 1.50 16 13 C -0.15 -1.60 10.08 -39.35 -0.40 -1.99 16 14 C 0.09 0.96 11.06 -17.99 -0.20 0.76 16 15 N -0.49 -6.45 10.31 -13.24 -0.14 -6.58 16 16 C 0.17 2.38 10.49 -17.07 -0.18 2.20 16 17 C -0.13 -1.90 5.76 -106.55 -0.61 -2.52 16 18 C 0.06 0.98 5.08 -3.06 -0.02 0.96 16 19 C 0.18 2.99 2.86 -66.09 -0.19 2.80 16 20 H 0.07 1.20 8.03 -51.93 -0.42 0.78 16 21 N -0.71 -15.23 4.61 -51.65 -0.24 -15.46 16 22 C -0.25 -6.10 9.98 -15.06 -0.15 -6.25 16 23 H 0.07 1.70 7.83 -52.49 -0.41 1.28 16 24 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 25 N -0.93 -25.75 13.06 55.49 0.72 -25.02 16 26 Si 0.91 20.64 29.55 -169.99 -5.02 15.62 16 27 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 29 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.63 7.91 -51.93 -0.41 0.22 16 33 H 0.07 1.20 6.38 -51.93 -0.33 0.86 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.25 7.99 -51.93 -0.41 0.83 16 37 H 0.07 1.06 8.00 -51.93 -0.42 0.64 16 38 H 0.16 1.93 5.95 -52.49 -0.31 1.62 16 39 H 0.17 1.37 8.06 -52.48 -0.42 0.95 16 40 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 41 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.17 2.44 6.33 -52.48 -0.33 2.10 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.08 1.35 5.93 -51.93 -0.31 1.04 16 45 H 0.39 9.00 6.10 -40.82 -0.25 8.75 16 46 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 374.92 15.07 5.65 5.65 Total: -1.00 -29.83 374.92 -8.85 -38.68 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -6.12 Total: 10.31 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -3.11 Total: 2.26 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: -0.33 Total: -62.84 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.08 Total: -9.68 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.83 -8.85 -38.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996083395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.255 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds