Wall clock time and date at job start Tue Mar 31 2020 23:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 110.88987 * 2 1 4 4 C 1.55133 * 111.19297 * 236.06423 * 2 1 3 5 5 N 1.47424 * 104.72020 * 279.19178 * 4 2 1 6 6 C 1.34778 * 125.64195 * 155.81722 * 5 4 2 7 7 O 1.21527 * 120.00198 * 4.58852 * 6 5 4 8 8 C 1.48007 * 119.99952 * 184.58847 * 6 5 4 9 9 C 1.38893 * 121.16986 * 313.18384 * 8 6 5 10 10 C 1.39350 * 119.66842 * 180.26074 * 9 8 6 11 11 N 1.31105 * 121.90536 * 359.46626 * 10 9 8 12 12 C 1.33279 * 121.61802 * 0.25472 * 11 10 9 13 13 C 1.40830 * 121.92591 * 180.02562 * 12 11 10 14 14 C 1.36164 * 118.77831 * 179.97438 * 13 12 11 15 15 N 1.32544 * 121.95764 * 0.04365 * 14 13 12 16 16 C 1.31342 * 122.59853 * 359.97438 * 15 14 13 17 17 C 1.40078 * 119.87779 * 359.97438 * 16 15 14 18 18 C 1.47020 * 108.70875 * 335.55640 * 5 4 2 19 19 C 1.54329 * 107.26944 * 1.28473 * 18 5 4 20 20 H 1.08997 * 110.71823 * 140.55943 * 19 18 5 21 21 N 1.46500 * 110.71883 * 263.83202 * 19 18 5 22 22 C 1.36937 * 120.00250 * 273.54471 * 21 19 18 23 23 H 1.08001 * 119.99266 * 0.02562 * 22 21 19 24 24 C 1.38804 * 120.00202 * 180.02562 * 22 21 19 25 25 N 1.31624 * 120.00282 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99995 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47123 * 90.00294 * 26 24 22 28 28 H 1.48507 * 109.47143 * 210.00148 * 26 24 22 29 29 H 1.48500 * 109.47307 * 330.00316 * 26 24 22 30 30 H 1.08997 * 109.47129 * 296.12374 * 1 2 3 31 31 H 1.09003 * 109.46821 * 56.12246 * 1 2 3 32 32 H 1.08997 * 109.47285 * 176.11885 * 1 2 3 33 33 H 1.08995 * 109.47098 * 183.87542 * 3 2 1 34 34 H 1.08998 * 109.46644 * 303.88286 * 3 2 1 35 35 H 1.09002 * 109.46743 * 63.87485 * 3 2 1 36 36 H 1.09001 * 110.49335 * 160.35579 * 4 2 1 37 37 H 1.08997 * 110.34168 * 37.95959 * 4 2 1 38 38 H 1.08002 * 120.16644 * 0.02562 * 9 8 6 39 39 H 1.08004 * 119.04631 * 179.74527 * 10 9 8 40 40 H 1.08005 * 120.61371 * 359.96035 * 13 12 11 41 41 H 1.07991 * 119.02604 * 180.02562 * 14 13 12 42 42 H 1.08003 * 120.06068 * 179.97438 * 16 15 14 43 43 H 1.08999 * 109.88673 * 120.70162 * 18 5 4 44 44 H 1.09000 * 109.88064 * 241.71909 * 18 5 4 45 45 H 0.97000 * 119.99880 * 93.54687 * 21 19 18 46 46 H 0.96996 * 120.00289 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0756 1.4295 0.0000 4 6 2.0909 -0.8075 -1.2000 5 7 2.0139 -2.2162 -0.7723 6 6 1.9471 -3.2835 -1.5927 7 8 2.0312 -3.1317 -2.7955 8 6 1.7714 -4.6406 -1.0286 9 6 2.5373 -5.0777 0.0445 10 6 2.3495 -6.3637 0.5473 11 7 1.4574 -7.1815 0.0431 12 6 0.6847 -6.8260 -0.9830 13 6 -0.2760 -7.6990 -1.5293 14 6 -1.0315 -7.2692 -2.5774 15 7 -0.8877 -6.0578 -3.0956 16 6 -0.0128 -5.1916 -2.6381 17 6 0.8127 -5.5367 -1.5603 18 6 2.0284 -2.2644 0.6970 19 6 2.0861 -0.8075 1.2027 20 1 1.4523 -0.6784 2.0800 21 7 3.4666 -0.4151 1.4965 22 6 4.0065 -0.6795 2.7269 23 1 3.4146 -1.1777 3.4804 24 6 5.3144 -0.3072 3.0055 25 7 6.0355 0.3004 2.0872 26 14 6.0506 -0.6673 4.6841 27 1 6.6979 -2.0037 4.6644 28 1 7.0629 0.3683 5.0131 29 1 4.9763 -0.6527 5.7092 30 1 -0.3633 0.4525 0.9227 31 1 -0.3633 0.5729 -0.8532 32 1 -0.3634 -1.0253 -0.0696 33 1 3.1630 1.4033 -0.0695 34 1 1.6699 1.9731 -0.8532 35 1 1.7824 1.9302 0.9227 36 1 3.1254 -0.5273 -1.3984 37 1 1.4765 -0.6458 -2.0857 38 1 3.2772 -4.4256 0.4845 39 1 2.9534 -6.6947 1.3793 40 1 -0.4108 -8.6912 -1.1245 41 1 -1.7696 -7.9351 -2.9991 42 1 0.0700 -4.2151 -3.0920 43 1 1.1217 -2.7475 1.0611 44 1 2.9048 -2.8136 1.0412 45 1 3.9983 0.0321 0.8195 46 1 6.9493 0.5609 2.2820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996083395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:04 Heat of formation + Delta-G solvation = 36.208045 kcal Electronic energy + Delta-G solvation = -29897.461992 eV Core-core repulsion = 25979.838408 eV Total energy + Delta-G solvation = -3917.623584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.55909 -41.27132 -39.43318 -39.07100 -35.77464 -35.11046 -34.30280 -32.71121 -32.60274 -31.61442 -29.52454 -28.16620 -27.95377 -26.28670 -25.66398 -25.29101 -24.28041 -23.02933 -20.96996 -20.29634 -19.71992 -19.08990 -18.77008 -18.26261 -17.59046 -17.10617 -16.68706 -16.41282 -15.92728 -15.79839 -15.77441 -15.70698 -15.38885 -15.14788 -14.97679 -14.51922 -14.33929 -14.04994 -13.92421 -13.73149 -13.49840 -13.23497 -13.13132 -12.97613 -12.82912 -12.75300 -12.69815 -12.14654 -12.05825 -12.01835 -11.72310 -11.58367 -11.44965 -11.26315 -11.01225 -10.87672 -10.53188 -10.50061 -9.79937 -9.61667 -9.00015 -7.89812 -5.18291 -1.16346 -0.47419 0.40608 1.41917 1.52407 1.53876 1.61129 1.71795 1.90044 2.59587 2.88440 2.99350 3.08550 3.27234 3.37398 3.40931 3.52250 3.55507 3.57639 3.77707 3.86299 4.02990 4.06613 4.19866 4.27307 4.29822 4.43862 4.51917 4.57537 4.61265 4.62234 4.71469 4.79119 4.83256 4.88745 4.90717 4.98249 5.05454 5.08780 5.18459 5.22014 5.31336 5.39042 5.49252 5.56332 5.61287 6.30582 6.31205 6.56010 6.75158 6.81216 7.39525 8.12321 8.35748 9.33074 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012920 B = 0.003566 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.611566 B = 7851.006230 C = 9331.323845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.077 4.077 3 C -0.120 4.120 4 C 0.120 3.880 5 N -0.590 5.590 6 C 0.568 3.432 7 O -0.564 6.564 8 C -0.049 4.049 9 C -0.138 4.138 10 C 0.162 3.838 11 N -0.475 5.475 12 C 0.138 3.862 13 C -0.138 4.138 14 C 0.089 3.911 15 N -0.500 5.500 16 C 0.154 3.846 17 C -0.146 4.146 18 C 0.075 3.925 19 C 0.172 3.828 20 H 0.080 0.920 21 N -0.721 5.721 22 C -0.234 4.234 23 H 0.083 0.917 24 C -0.068 4.068 25 N -0.967 5.967 26 Si 0.964 3.036 27 H -0.289 1.289 28 H -0.305 1.305 29 H -0.268 1.268 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.040 0.960 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.158 0.842 39 H 0.208 0.792 40 H 0.175 0.825 41 H 0.198 0.802 42 H 0.160 0.840 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.376 0.624 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.457 -11.035 -3.970 18.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.078 4.078 3 C -0.178 4.178 4 C -0.003 4.003 5 N -0.320 5.320 6 C 0.356 3.644 7 O -0.445 6.445 8 C -0.062 4.062 9 C -0.158 4.158 10 C -0.011 4.011 11 N -0.183 5.183 12 C 0.012 3.988 13 C -0.158 4.158 14 C -0.056 4.056 15 N -0.208 5.208 16 C -0.018 4.018 17 C -0.151 4.151 18 C -0.050 4.050 19 C 0.061 3.939 20 H 0.097 0.903 21 N -0.361 5.361 22 C -0.366 4.366 23 H 0.101 0.899 24 C -0.261 4.261 25 N -0.618 5.618 26 Si 0.794 3.206 27 H -0.217 1.217 28 H -0.233 1.233 29 H -0.192 1.192 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.176 0.824 39 H 0.225 0.775 40 H 0.192 0.808 41 H 0.215 0.785 42 H 0.177 0.823 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.210 0.790 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -15.205 -11.822 -4.866 19.865 hybrid contribution 2.103 0.889 0.884 2.448 sum -13.103 -10.933 -3.982 17.523 Atomic orbital electron populations 1.21650 0.91346 1.01997 1.03139 1.22019 0.97048 0.95318 0.93418 1.21509 1.00222 0.93960 1.02072 1.22413 1.00522 0.79166 0.98149 1.48358 1.69481 1.06071 1.08105 1.17942 0.77097 0.83855 0.85490 1.90769 1.52488 1.86007 1.15208 1.20216 0.96598 0.93511 0.95902 1.22875 0.99643 0.98928 0.94383 1.23721 0.92190 0.88039 0.97190 1.67966 1.05510 1.35335 1.09530 1.19240 0.95737 0.91083 0.92750 1.22061 0.94749 1.01490 0.97509 1.22934 0.97972 0.92047 0.92612 1.67626 1.19134 1.04182 1.29835 1.23276 0.88760 0.99097 0.90641 1.19620 0.99456 0.95942 1.00097 1.23332 1.01653 1.02050 0.77925 1.21443 0.86585 0.90041 0.95805 0.90250 1.42604 1.09873 1.69963 1.13673 1.19604 0.95223 1.30255 0.91472 0.89866 1.25424 0.97804 1.02132 1.00751 1.69805 1.09439 1.47500 1.35020 0.85284 0.78024 0.76574 0.80706 1.21659 1.23258 1.19243 0.91084 0.91068 0.92866 0.94141 0.91071 0.92342 0.92884 0.89931 0.82419 0.77524 0.80759 0.78547 0.82268 0.90258 0.91074 0.79005 0.94308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 8.59 71.98 0.62 -2.03 16 2 C -0.08 -2.10 0.83 -50.71 -0.04 -2.14 16 3 C -0.12 -3.43 8.22 71.98 0.59 -2.84 16 4 C 0.12 3.61 5.81 86.93 0.50 4.12 16 5 N -0.59 -17.99 3.31 -814.57 -2.70 -20.69 16 6 C 0.57 18.32 6.97 86.83 0.61 18.93 16 7 O -0.56 -21.21 15.69 -3.80 -0.06 -21.27 16 8 C -0.05 -1.38 5.47 -19.70 -0.11 -1.49 16 9 C -0.14 -3.29 8.64 22.69 0.20 -3.09 16 10 C 0.16 3.28 11.14 85.07 0.95 4.22 16 11 N -0.47 -11.08 10.33 -188.55 -1.95 -13.03 16 12 C 0.14 3.41 6.63 40.45 0.27 3.68 16 13 C -0.14 -2.65 10.08 22.42 0.23 -2.42 16 14 C 0.09 1.67 11.06 84.10 0.93 2.60 16 15 N -0.50 -12.67 10.31 -195.81 -2.02 -14.69 16 16 C 0.15 4.30 10.49 85.21 0.89 5.19 16 17 C -0.15 -4.05 5.76 -21.11 -0.12 -4.17 16 18 C 0.08 2.21 5.08 86.73 0.44 2.65 16 19 C 0.17 5.56 2.86 46.18 0.13 5.69 16 20 H 0.08 2.49 8.03 -2.39 -0.02 2.47 16 21 N -0.72 -31.04 4.61 -317.32 -1.46 -32.50 16 22 C -0.23 -11.31 9.98 84.03 0.84 -10.47 16 23 H 0.08 3.78 7.83 -2.91 -0.02 3.75 16 24 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 25 N -0.97 -55.30 13.06 21.65 0.28 -55.02 16 26 Si 0.96 42.67 29.55 68.60 2.03 44.69 16 27 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 28 H -0.31 -14.10 7.11 99.48 0.71 -13.39 16 29 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.15 7.91 -2.39 -0.02 1.13 16 33 H 0.04 1.41 6.38 -2.39 -0.02 1.39 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 1.84 7.99 -2.39 -0.02 1.82 16 37 H 0.08 2.34 8.00 -2.39 -0.02 2.33 16 38 H 0.16 3.73 5.95 -2.91 -0.02 3.71 16 39 H 0.21 2.59 8.06 -2.91 -0.02 2.56 16 40 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 41 H 0.20 2.08 8.06 -2.92 -0.02 2.06 16 42 H 0.16 4.72 6.33 -2.91 -0.02 4.70 16 43 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.07 2.27 5.93 -2.39 -0.01 2.26 16 45 H 0.38 18.01 6.10 -92.71 -0.57 17.45 16 46 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -65.72 374.92 1.96 -63.76 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: 0.45 Total: 33.45 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 7.39 Total: 15.30 kcal Atomic # 7 Polarization: -128.09 SS G_CDS: -7.84 Total: -135.93 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.06 Total: -21.27 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -65.72 1.96 -63.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996083395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.964 kcal (2) G-P(sol) polarization free energy of solvation -65.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds