Wall clock time and date at job start Tue Mar 31 2020 23:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52989 * 110.88769 * 2 1 4 4 C 1.55132 * 111.18864 * 236.07094 * 2 1 3 5 5 N 1.47430 * 104.72251 * 279.19596 * 4 2 1 6 6 C 1.34772 * 125.64828 * 155.82109 * 5 4 2 7 7 O 1.21549 * 120.00084 * 354.42035 * 6 5 4 8 8 C 1.47865 * 120.00009 * 174.70118 * 6 5 4 9 9 C 1.38961 * 121.42256 * 315.85888 * 8 6 5 10 10 N 1.32570 * 120.33874 * 179.97438 * 9 8 6 11 11 N 1.28378 * 123.43818 * 359.97438 * 10 9 8 12 12 C 1.33464 * 121.85009 * 359.97438 * 11 10 9 13 13 C 1.40584 * 121.73709 * 179.97438 * 12 11 10 14 14 C 1.36118 * 119.61267 * 180.02562 * 13 12 11 15 15 C 1.39367 * 121.12799 * 0.02562 * 14 13 12 16 16 C 1.36346 * 120.88751 * 0.02562 * 15 14 13 17 17 C 1.39857 * 119.49907 * 359.75855 * 16 15 14 18 18 C 1.47019 * 108.70291 * 335.55118 * 5 4 2 19 19 C 1.54324 * 107.27006 * 1.29047 * 18 5 4 20 20 H 1.08999 * 110.72399 * 140.55953 * 19 18 5 21 21 N 1.46509 * 110.72165 * 263.65305 * 19 18 5 22 22 C 1.36937 * 119.99556 * 273.54909 * 21 19 18 23 23 H 1.07997 * 120.00506 * 359.97438 * 22 21 19 24 24 C 1.38811 * 119.99543 * 179.97438 * 22 21 19 25 25 N 1.31618 * 120.00591 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99979 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47005 * 89.99804 * 26 24 22 28 28 H 1.48499 * 109.47189 * 210.00156 * 26 24 22 29 29 H 1.48500 * 109.46740 * 329.99856 * 26 24 22 30 30 H 1.09001 * 109.46785 * 296.11646 * 1 2 3 31 31 H 1.08996 * 109.47050 * 56.10948 * 1 2 3 32 32 H 1.09000 * 109.47279 * 176.11497 * 1 2 3 33 33 H 1.09005 * 109.47404 * 183.87831 * 3 2 1 34 34 H 1.08996 * 109.47576 * 303.88379 * 3 2 1 35 35 H 1.09011 * 109.47232 * 63.88899 * 3 2 1 36 36 H 1.08999 * 110.49876 * 160.35276 * 4 2 1 37 37 H 1.08999 * 110.34382 * 37.95624 * 4 2 1 38 38 H 1.07995 * 119.82317 * 359.97438 * 9 8 6 39 39 H 1.08002 * 120.19320 * 0.05000 * 13 12 11 40 40 H 1.08004 * 119.43298 * 179.97438 * 14 13 12 41 41 H 1.07996 * 119.55402 * 179.97438 * 15 14 13 42 42 H 1.08001 * 120.24898 * 179.97438 * 16 15 14 43 43 H 1.08998 * 109.88380 * 120.70423 * 18 5 4 44 44 H 1.09002 * 109.88100 * 241.72003 * 18 5 4 45 45 H 0.96990 * 119.99860 * 93.54360 * 21 19 18 46 46 H 0.96992 * 120.00533 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0755 1.4293 0.0000 4 6 2.0908 -0.8074 -1.2002 5 7 2.0137 -2.2162 -0.7727 6 6 1.9469 -3.2834 -1.5931 7 8 1.8447 -3.1218 -2.7934 8 6 1.9917 -4.6509 -1.0324 9 6 2.9003 -4.9976 -0.0398 10 7 2.9213 -6.2301 0.4480 11 7 2.1305 -7.1609 0.0527 12 6 1.2136 -6.9511 -0.8942 13 6 0.3492 -7.9724 -1.3257 14 6 -0.5699 -7.7107 -2.2950 15 6 -0.6701 -6.4452 -2.8702 16 6 0.1522 -5.4309 -2.4776 17 6 1.1051 -5.6635 -1.4807 18 6 2.0284 -2.2646 0.6966 19 6 2.0861 -0.8077 1.2024 20 1 1.4525 -0.6786 2.0798 21 7 3.4663 -0.4166 1.5002 22 6 4.0023 -0.6817 2.7321 23 1 3.4076 -1.1786 3.4843 24 6 5.3102 -0.3116 3.0141 25 7 6.0352 0.2935 2.0973 26 14 6.0413 -0.6725 4.6948 27 1 6.6861 -2.0100 4.6773 28 1 7.0545 0.3613 5.0263 29 1 4.9642 -0.6556 5.7170 30 1 -0.3633 0.4524 0.9228 31 1 -0.3633 0.5730 -0.8530 32 1 -0.3634 -1.0253 -0.0696 33 1 3.1631 1.4033 -0.0695 34 1 1.6699 1.9731 -0.8531 35 1 1.7825 1.9301 0.9229 36 1 3.1253 -0.5272 -1.3987 37 1 1.4764 -0.6456 -2.0858 38 1 3.5929 -4.2590 0.3360 39 1 0.4136 -8.9586 -0.8903 40 1 -1.2323 -8.4975 -2.6246 41 1 -1.4083 -6.2659 -3.6377 42 1 0.0659 -4.4543 -2.9306 43 1 1.1217 -2.7477 1.0607 44 1 2.9048 -2.8138 1.0407 45 1 4.0003 0.0299 0.8248 46 1 6.9489 0.5524 2.2945 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996348847.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:17 Heat of formation + Delta-G solvation = 67.676522 kcal Electronic energy + Delta-G solvation = -29911.972812 eV Core-core repulsion = 25995.713804 eV Total energy + Delta-G solvation = -3916.259008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.65199 -40.03609 -38.14542 -37.98340 -34.22704 -33.90179 -33.15744 -31.82190 -30.86584 -30.59393 -28.11266 -27.16713 -26.76445 -25.28479 -24.59006 -23.90910 -22.89639 -21.70547 -19.76179 -19.01775 -18.72490 -18.43847 -17.38662 -17.01036 -16.11425 -15.76982 -15.63917 -15.20195 -15.09545 -14.83747 -14.36380 -14.21871 -14.08758 -13.95594 -13.53730 -13.05724 -12.82939 -12.67013 -12.61366 -12.54840 -12.27617 -12.13565 -11.91520 -11.70968 -11.61311 -11.06463 -11.04733 -10.95862 -10.90132 -10.65885 -10.54914 -10.48710 -10.29053 -9.94136 -9.73948 -9.63187 -9.58155 -9.07178 -8.64798 -8.44805 -7.15081 -5.90154 -3.21157 -0.40516 0.43363 1.38775 2.47583 2.71441 2.94091 3.37978 3.43958 3.45093 3.70645 3.80394 4.12306 4.19136 4.26596 4.47006 4.52252 4.64870 4.75633 4.84796 4.94303 4.95677 5.12044 5.20826 5.34290 5.38071 5.50963 5.53784 5.58020 5.63431 5.69451 5.76415 5.83335 5.91354 5.97054 6.02160 6.04602 6.06596 6.13457 6.16315 6.23414 6.28362 6.39353 6.40509 6.48489 6.64882 6.81344 7.54780 7.59214 8.02823 8.27247 8.45920 9.39889 9.92148 10.27139 11.31518 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012350 B = 0.003677 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.582733 B = 7612.957512 C = 9239.996912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 C -0.125 4.125 4 C 0.120 3.880 5 N -0.591 5.591 6 C 0.575 3.425 7 O -0.536 6.536 8 C -0.095 4.095 9 C 0.052 3.948 10 N -0.216 5.216 11 N -0.194 5.194 12 C 0.059 3.941 13 C -0.077 4.077 14 C -0.100 4.100 15 C -0.094 4.094 16 C -0.096 4.096 17 C -0.029 4.029 18 C 0.062 3.938 19 C 0.181 3.819 20 H 0.073 0.927 21 N -0.711 5.711 22 C -0.251 4.251 23 H 0.073 0.927 24 C -0.004 4.004 25 N -0.928 5.928 26 Si 0.906 3.094 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.186 0.814 39 H 0.145 0.855 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.147 0.853 43 H 0.056 0.944 44 H 0.083 0.917 45 H 0.387 0.613 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.383 -9.109 -8.982 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.090 4.090 3 C -0.183 4.183 4 C -0.002 4.002 5 N -0.323 5.323 6 C 0.362 3.638 7 O -0.414 6.414 8 C -0.110 4.110 9 C -0.100 4.100 10 N -0.068 5.068 11 N -0.048 5.048 12 C -0.071 4.071 13 C -0.098 4.098 14 C -0.121 4.121 15 C -0.114 4.114 16 C -0.115 4.115 17 C -0.038 4.038 18 C -0.064 4.064 19 C 0.068 3.932 20 H 0.090 0.910 21 N -0.352 5.352 22 C -0.382 4.382 23 H 0.090 0.910 24 C -0.201 4.201 25 N -0.575 5.575 26 Si 0.737 3.263 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.206 1.206 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.203 0.797 39 H 0.163 0.837 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.165 0.835 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.223 0.777 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.647 -10.058 -8.419 19.661 hybrid contribution 0.201 0.845 -0.206 0.893 sum -14.446 -9.213 -8.625 19.182 Atomic orbital electron populations 1.21685 0.93848 1.01434 1.01785 1.22058 0.95372 0.96191 0.95370 1.21578 1.02141 0.93368 1.01221 1.22435 1.01501 0.78866 0.97369 1.48328 1.69841 1.06039 1.08049 1.17387 0.77752 0.82917 0.85748 1.90771 1.50729 1.85810 1.14091 1.21155 0.97376 0.95286 0.97201 1.24631 0.97347 0.96007 0.92012 1.73095 1.15060 0.98534 1.20068 1.73632 0.99791 1.23963 1.07456 1.20352 0.97433 0.93056 0.96210 1.20797 0.93748 0.98442 0.96765 1.21058 0.97975 0.97287 0.95745 1.21172 0.98364 0.92686 0.99131 1.21214 0.93726 1.01258 0.95304 1.18624 0.95856 0.92790 0.96578 1.23582 1.01162 1.03650 0.78026 1.21199 0.88928 0.88657 0.94397 0.90967 1.42456 1.08107 1.69916 1.14715 1.19205 0.95562 1.32923 0.90475 0.90951 1.24738 0.96778 1.00683 0.97931 1.69644 1.09469 1.45060 1.33284 0.86219 0.78899 0.77571 0.83650 1.21484 1.21759 1.20648 0.92148 0.92671 0.92988 0.91112 0.93508 0.91930 0.90612 0.90725 0.79722 0.83716 0.84533 0.84717 0.83542 0.92595 0.89933 0.77692 0.93293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 8.58 37.16 0.32 -1.24 16 2 C -0.09 -1.27 0.84 -152.24 -0.13 -1.40 16 3 C -0.13 -1.83 8.22 37.15 0.31 -1.53 16 4 C 0.12 1.82 5.85 -2.41 -0.01 1.81 16 5 N -0.59 -9.31 3.31 -171.48 -0.57 -9.87 16 6 C 0.58 9.40 7.06 -12.32 -0.09 9.31 16 7 O -0.54 -9.70 15.45 5.32 0.08 -9.61 16 8 C -0.09 -1.46 5.45 -104.31 -0.57 -2.02 16 9 C 0.05 0.81 9.77 -16.97 -0.17 0.65 16 10 N -0.22 -3.55 11.46 30.73 0.35 -3.20 16 11 N -0.19 -3.00 11.52 32.21 0.37 -2.63 16 12 C 0.06 0.80 6.69 -84.87 -0.57 0.23 16 13 C -0.08 -0.76 10.01 -39.46 -0.39 -1.15 16 14 C -0.10 -0.78 9.94 -39.92 -0.40 -1.18 16 15 C -0.09 -0.82 9.96 -39.84 -0.40 -1.22 16 16 C -0.10 -1.15 9.23 -39.66 -0.37 -1.52 16 17 C -0.03 -0.41 5.77 -106.50 -0.61 -1.03 16 18 C 0.06 0.99 5.34 -3.07 -0.02 0.97 16 19 C 0.18 3.11 2.85 -66.09 -0.19 2.92 16 20 H 0.07 1.25 8.02 -51.93 -0.42 0.83 16 21 N -0.71 -15.59 4.62 -51.65 -0.24 -15.82 16 22 C -0.25 -6.30 9.98 -15.06 -0.15 -6.45 16 23 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 24 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 25 N -0.93 -26.20 13.06 55.49 0.72 -25.47 16 26 Si 0.91 21.31 29.55 -169.99 -5.02 16.28 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.63 7.91 -51.93 -0.41 0.22 16 33 H 0.07 1.20 6.39 -51.93 -0.33 0.87 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 36 H 0.08 1.25 7.99 -51.93 -0.41 0.84 16 37 H 0.07 1.07 7.91 -51.93 -0.41 0.66 16 38 H 0.19 2.88 6.14 -52.49 -0.32 2.56 16 39 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16 41 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 42 H 0.15 1.85 6.26 -52.49 -0.33 1.52 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 1.46 5.68 -51.93 -0.29 1.16 16 45 H 0.39 9.12 6.12 -40.82 -0.25 8.87 16 46 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 374.80 15.07 5.65 5.65 Total: -1.00 -30.05 374.80 -8.29 -38.34 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.11 Total: 9.40 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -3.53 Total: -3.05 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.64 Total: -57.00 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.05 -8.29 -38.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996348847.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.013 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds