Wall clock time and date at job start Tue Mar 31 2020 23:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52989 * 110.88769 * 2 1 4 4 C 1.55132 * 111.18864 * 236.07094 * 2 1 3 5 5 N 1.47430 * 104.72251 * 279.19596 * 4 2 1 6 6 C 1.34772 * 125.64828 * 155.82109 * 5 4 2 7 7 O 1.21549 * 120.00084 * 354.42035 * 6 5 4 8 8 C 1.47865 * 120.00009 * 174.70118 * 6 5 4 9 9 C 1.38961 * 121.42256 * 315.85888 * 8 6 5 10 10 N 1.32570 * 120.33874 * 179.97438 * 9 8 6 11 11 N 1.28378 * 123.43818 * 359.97438 * 10 9 8 12 12 C 1.33464 * 121.85009 * 359.97438 * 11 10 9 13 13 C 1.40584 * 121.73709 * 179.97438 * 12 11 10 14 14 C 1.36118 * 119.61267 * 180.02562 * 13 12 11 15 15 C 1.39367 * 121.12799 * 0.02562 * 14 13 12 16 16 C 1.36346 * 120.88751 * 0.02562 * 15 14 13 17 17 C 1.39857 * 119.49907 * 359.75855 * 16 15 14 18 18 C 1.47019 * 108.70291 * 335.55118 * 5 4 2 19 19 C 1.54324 * 107.27006 * 1.29047 * 18 5 4 20 20 H 1.08999 * 110.72399 * 140.55953 * 19 18 5 21 21 N 1.46509 * 110.72165 * 263.65305 * 19 18 5 22 22 C 1.36937 * 119.99556 * 273.54909 * 21 19 18 23 23 H 1.07997 * 120.00506 * 359.97438 * 22 21 19 24 24 C 1.38811 * 119.99543 * 179.97438 * 22 21 19 25 25 N 1.31618 * 120.00591 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99979 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47005 * 89.99804 * 26 24 22 28 28 H 1.48499 * 109.47189 * 210.00156 * 26 24 22 29 29 H 1.48500 * 109.46740 * 329.99856 * 26 24 22 30 30 H 1.09001 * 109.46785 * 296.11646 * 1 2 3 31 31 H 1.08996 * 109.47050 * 56.10948 * 1 2 3 32 32 H 1.09000 * 109.47279 * 176.11497 * 1 2 3 33 33 H 1.09005 * 109.47404 * 183.87831 * 3 2 1 34 34 H 1.08996 * 109.47576 * 303.88379 * 3 2 1 35 35 H 1.09011 * 109.47232 * 63.88899 * 3 2 1 36 36 H 1.08999 * 110.49876 * 160.35276 * 4 2 1 37 37 H 1.08999 * 110.34382 * 37.95624 * 4 2 1 38 38 H 1.07995 * 119.82317 * 359.97438 * 9 8 6 39 39 H 1.08002 * 120.19320 * 0.05000 * 13 12 11 40 40 H 1.08004 * 119.43298 * 179.97438 * 14 13 12 41 41 H 1.07996 * 119.55402 * 179.97438 * 15 14 13 42 42 H 1.08001 * 120.24898 * 179.97438 * 16 15 14 43 43 H 1.08998 * 109.88380 * 120.70423 * 18 5 4 44 44 H 1.09002 * 109.88100 * 241.72003 * 18 5 4 45 45 H 0.96990 * 119.99860 * 93.54360 * 21 19 18 46 46 H 0.96992 * 120.00533 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0755 1.4293 0.0000 4 6 2.0908 -0.8074 -1.2002 5 7 2.0137 -2.2162 -0.7727 6 6 1.9469 -3.2834 -1.5931 7 8 1.8447 -3.1218 -2.7934 8 6 1.9917 -4.6509 -1.0324 9 6 2.9003 -4.9976 -0.0398 10 7 2.9213 -6.2301 0.4480 11 7 2.1305 -7.1609 0.0527 12 6 1.2136 -6.9511 -0.8942 13 6 0.3492 -7.9724 -1.3257 14 6 -0.5699 -7.7107 -2.2950 15 6 -0.6701 -6.4452 -2.8702 16 6 0.1522 -5.4309 -2.4776 17 6 1.1051 -5.6635 -1.4807 18 6 2.0284 -2.2646 0.6966 19 6 2.0861 -0.8077 1.2024 20 1 1.4525 -0.6786 2.0798 21 7 3.4663 -0.4166 1.5002 22 6 4.0023 -0.6817 2.7321 23 1 3.4076 -1.1786 3.4843 24 6 5.3102 -0.3116 3.0141 25 7 6.0352 0.2935 2.0973 26 14 6.0413 -0.6725 4.6948 27 1 6.6861 -2.0100 4.6773 28 1 7.0545 0.3613 5.0263 29 1 4.9642 -0.6556 5.7170 30 1 -0.3633 0.4524 0.9228 31 1 -0.3633 0.5730 -0.8530 32 1 -0.3634 -1.0253 -0.0696 33 1 3.1631 1.4033 -0.0695 34 1 1.6699 1.9731 -0.8531 35 1 1.7825 1.9301 0.9229 36 1 3.1253 -0.5272 -1.3987 37 1 1.4764 -0.6456 -2.0858 38 1 3.5929 -4.2590 0.3360 39 1 0.4136 -8.9586 -0.8903 40 1 -1.2323 -8.4975 -2.6246 41 1 -1.4083 -6.2659 -3.6377 42 1 0.0659 -4.4543 -2.9306 43 1 1.1217 -2.7477 1.0607 44 1 2.9048 -2.8138 1.0407 45 1 4.0003 0.0299 0.8248 46 1 6.9489 0.5524 2.2945 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996348847.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:16 Heat of formation + Delta-G solvation = 49.264832 kcal Electronic energy + Delta-G solvation = -29912.771203 eV Core-core repulsion = 25995.713804 eV Total energy + Delta-G solvation = -3917.057399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.72374 -41.30298 -39.44195 -38.92647 -35.81033 -35.22684 -34.37593 -32.78201 -32.63605 -31.50331 -29.56787 -28.32902 -28.01041 -26.42401 -25.75885 -25.46084 -23.90275 -23.10061 -20.94141 -20.30592 -19.75274 -19.49386 -19.12423 -18.27449 -17.37694 -17.04844 -16.68573 -16.45762 -16.26542 -16.06945 -15.80110 -15.50680 -15.30322 -15.12122 -14.76066 -14.57466 -14.20488 -13.81054 -13.57855 -13.53005 -13.47498 -13.25700 -13.13794 -12.86793 -12.80375 -12.76312 -12.72149 -12.18163 -12.16089 -12.07255 -11.95984 -11.79267 -11.69582 -11.48224 -11.29560 -10.97728 -10.77542 -10.50486 -9.83254 -9.50778 -9.03431 -7.93368 -5.21606 -1.43119 -0.54581 0.46041 1.31177 1.49196 1.51172 1.57579 1.62460 1.76991 2.56541 2.73075 2.76395 2.98286 3.12183 3.25091 3.37284 3.48131 3.65581 3.73841 3.77142 3.83478 3.99770 4.06215 4.13284 4.24993 4.30252 4.40538 4.44063 4.55268 4.56593 4.68518 4.76458 4.85569 4.88056 4.88542 4.94342 4.99675 5.02561 5.07558 5.14960 5.21249 5.28032 5.28745 5.37837 5.54421 5.59016 5.65852 6.24100 6.27937 6.73623 7.34145 7.36687 8.08758 8.32434 9.29308 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012350 B = 0.003677 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.582733 B = 7612.957512 C = 9239.996912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.075 4.075 3 C -0.120 4.120 4 C 0.120 3.880 5 N -0.590 5.590 6 C 0.579 3.421 7 O -0.556 6.556 8 C -0.111 4.111 9 C 0.046 3.954 10 N -0.247 5.247 11 N -0.206 5.206 12 C 0.044 3.956 13 C -0.082 4.082 14 C -0.079 4.079 15 C -0.063 4.063 16 C -0.127 4.127 17 C -0.036 4.036 18 C 0.074 3.926 19 C 0.173 3.827 20 H 0.078 0.922 21 N -0.720 5.720 22 C -0.237 4.237 23 H 0.079 0.921 24 C -0.066 4.066 25 N -0.965 5.965 26 Si 0.962 3.038 27 H -0.293 1.293 28 H -0.300 1.300 29 H -0.268 1.268 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.174 0.826 39 H 0.168 0.832 40 H 0.186 0.814 41 H 0.174 0.826 42 H 0.136 0.864 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.377 0.623 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.262 -10.923 -10.128 24.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.077 4.077 3 C -0.177 4.177 4 C -0.002 4.002 5 N -0.321 5.321 6 C 0.367 3.633 7 O -0.436 6.436 8 C -0.127 4.127 9 C -0.107 4.107 10 N -0.099 5.099 11 N -0.060 5.060 12 C -0.086 4.086 13 C -0.103 4.103 14 C -0.099 4.099 15 C -0.083 4.083 16 C -0.146 4.146 17 C -0.046 4.046 18 C -0.052 4.052 19 C 0.062 3.938 20 H 0.096 0.904 21 N -0.360 5.360 22 C -0.369 4.369 23 H 0.097 0.903 24 C -0.258 4.258 25 N -0.615 5.615 26 Si 0.792 3.208 27 H -0.221 1.221 28 H -0.227 1.227 29 H -0.193 1.193 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.191 0.809 39 H 0.186 0.814 40 H 0.203 0.797 41 H 0.192 0.808 42 H 0.154 0.846 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.211 0.789 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -18.570 -11.889 -9.539 24.025 hybrid contribution 1.179 1.255 -0.012 1.722 sum -17.392 -10.634 -9.551 22.512 Atomic orbital electron populations 1.21648 0.91173 1.01995 1.03232 1.22011 0.97194 0.95338 0.93108 1.21510 1.00239 0.93809 1.02190 1.22449 1.00689 0.78726 0.98326 1.48325 1.69654 1.06276 1.07809 1.17512 0.77071 0.83313 0.85442 1.90742 1.51814 1.86190 1.14814 1.21067 0.98519 0.95202 0.97887 1.24409 0.97718 0.95863 0.92671 1.73013 1.16496 0.98915 1.21430 1.73498 1.00281 1.23872 1.08320 1.20811 0.97804 0.94007 0.96012 1.21211 0.93277 0.98460 0.97319 1.21618 0.96909 0.97882 0.93524 1.21720 0.96703 0.91830 0.98003 1.21239 0.95073 1.02210 0.96070 1.18866 0.96028 0.92583 0.97091 1.23310 1.01176 1.02394 0.78308 1.21429 0.86676 0.89710 0.95968 0.90403 1.42569 1.09911 1.69951 1.13561 1.19568 0.95365 1.30475 0.91452 0.90292 1.25395 0.97655 1.02027 1.00770 1.69786 1.09331 1.47447 1.34915 0.85316 0.78131 0.76551 0.80821 1.22060 1.22671 1.19275 0.91157 0.90719 0.92940 0.94155 0.90762 0.92363 0.92673 0.89402 0.80860 0.81442 0.79657 0.80813 0.84618 0.90754 0.91953 0.78865 0.94189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 8.58 71.98 0.62 -2.03 16 2 C -0.08 -2.10 0.84 -50.71 -0.04 -2.15 16 3 C -0.12 -3.45 8.22 71.98 0.59 -2.86 16 4 C 0.12 3.66 5.85 86.93 0.51 4.16 16 5 N -0.59 -18.91 3.31 -814.73 -2.70 -21.60 16 6 C 0.58 19.38 7.06 86.79 0.61 19.99 16 7 O -0.56 -20.39 15.45 -3.87 -0.06 -20.45 16 8 C -0.11 -3.55 5.45 -19.66 -0.11 -3.65 16 9 C 0.05 1.53 9.77 84.75 0.83 2.36 16 10 N -0.25 -8.55 11.46 -56.68 -0.65 -9.20 16 11 N -0.21 -6.44 11.52 -51.99 -0.60 -7.04 16 12 C 0.04 1.15 6.69 40.38 0.27 1.42 16 13 C -0.08 -1.34 10.01 22.35 0.22 -1.11 16 14 C -0.08 -0.80 9.94 22.05 0.22 -0.58 16 15 C -0.06 -0.80 9.96 22.10 0.22 -0.58 16 16 C -0.13 -2.79 9.23 22.22 0.21 -2.58 16 17 C -0.04 -1.01 5.77 -21.08 -0.12 -1.13 16 18 C 0.07 2.40 5.34 86.73 0.46 2.86 16 19 C 0.17 5.95 2.85 46.18 0.13 6.08 16 20 H 0.08 2.62 8.02 -2.39 -0.02 2.60 16 21 N -0.72 -32.49 4.62 -317.32 -1.47 -33.96 16 22 C -0.24 -12.11 9.98 84.03 0.84 -11.27 16 23 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 24 C -0.07 -3.58 5.50 84.86 0.47 -3.12 16 25 N -0.96 -56.68 13.06 21.65 0.28 -56.39 16 26 Si 0.96 44.91 29.55 68.60 2.03 46.94 16 27 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 28 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 29 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.14 7.91 -2.39 -0.02 1.12 16 33 H 0.04 1.41 6.39 -2.38 -0.02 1.40 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.05 1.91 7.99 -2.39 -0.02 1.89 16 37 H 0.09 2.46 7.91 -2.39 -0.02 2.44 16 38 H 0.17 5.98 6.14 -2.91 -0.02 5.96 16 39 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.19 0.21 8.06 -2.91 -0.02 0.19 16 41 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 42 H 0.14 3.28 6.26 -2.91 -0.02 3.26 16 43 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.06 2.32 5.68 -2.39 -0.01 2.31 16 45 H 0.38 18.60 6.12 -92.72 -0.57 18.04 16 46 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -69.06 374.80 3.22 -65.85 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 0.45 Total: 30.06 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 5.93 Total: 5.80 kcal Atomic # 7 Polarization: -123.06 SS G_CDS: -5.13 Total: -128.19 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.06 Total: -20.45 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -69.06 3.22 -65.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996348847.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.110 kcal (2) G-P(sol) polarization free energy of solvation -69.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds