Wall clock time and date at job start Tue Mar 31 2020 23:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 110.88573 * 2 1 4 4 C 1.55131 * 111.19615 * 236.07328 * 2 1 3 5 5 N 1.47423 * 104.72171 * 279.19137 * 4 2 1 6 6 C 1.34777 * 125.64827 * 155.81497 * 5 4 2 7 7 O 1.21482 * 120.00416 * 359.71351 * 6 5 4 8 8 C 1.48382 * 119.99883 * 179.71332 * 6 5 4 9 9 C 1.40209 * 119.22008 * 179.97438 * 8 6 5 10 10 C 1.36649 * 119.90687 * 180.02562 * 9 8 6 11 11 C 1.40553 * 118.10753 * 0.02562 * 10 9 8 12 12 C 1.40408 * 122.06710 * 179.97438 * 11 10 9 13 13 N 1.31243 * 119.87542 * 180.02562 * 12 11 10 14 14 C 1.32600 * 122.68675 * 0.02562 * 13 12 11 15 15 C 1.36105 * 121.99133 * 0.02562 * 14 13 12 16 16 C 1.40943 * 118.76475 * 359.95888 * 15 14 13 17 17 N 1.31984 * 119.21986 * 0.02562 * 8 6 5 18 18 C 1.47025 * 108.70271 * 335.55006 * 5 4 2 19 19 C 1.54324 * 107.27019 * 1.28889 * 18 5 4 20 20 H 1.08997 * 110.72570 * 140.73692 * 19 18 5 21 21 N 1.46508 * 110.72010 * 263.83376 * 19 18 5 22 22 C 1.36933 * 119.99510 * 273.54472 * 21 19 18 23 23 H 1.07999 * 120.00180 * 359.97438 * 22 21 19 24 24 C 1.38813 * 119.99869 * 180.02562 * 22 21 19 25 25 N 1.31621 * 119.99804 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00285 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47585 * 89.99629 * 26 24 22 28 28 H 1.48502 * 109.47269 * 209.99859 * 26 24 22 29 29 H 1.48502 * 109.46971 * 329.99958 * 26 24 22 30 30 H 1.08997 * 109.47366 * 296.11073 * 1 2 3 31 31 H 1.08998 * 109.47135 * 56.12106 * 1 2 3 32 32 H 1.09002 * 109.46619 * 176.11509 * 1 2 3 33 33 H 1.08997 * 109.46915 * 183.88221 * 3 2 1 34 34 H 1.08994 * 109.47022 * 303.88437 * 3 2 1 35 35 H 1.09003 * 109.46409 * 63.88462 * 3 2 1 36 36 H 1.08999 * 110.50412 * 160.34418 * 4 2 1 37 37 H 1.09006 * 110.34256 * 37.95348 * 4 2 1 38 38 H 1.08000 * 120.04531 * 0.02562 * 9 8 6 39 39 H 1.07997 * 120.94214 * 180.02562 * 10 9 8 40 40 H 1.07995 * 120.05914 * 0.02562 * 12 11 10 41 41 H 1.07993 * 119.00604 * 179.97438 * 14 13 12 42 42 H 1.07999 * 120.61609 * 180.02562 * 15 14 13 43 43 H 1.08997 * 109.88520 * 120.70269 * 18 5 4 44 44 H 1.09003 * 109.88153 * 241.72285 * 18 5 4 45 45 H 0.96993 * 120.00158 * 93.54358 * 21 19 18 46 46 H 0.97004 * 119.99688 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0909 -0.8073 -1.2001 5 7 2.0140 -2.2161 -0.7727 6 6 1.9472 -3.2833 -1.5931 7 8 1.9420 -3.1243 -2.7974 8 6 1.8801 -4.6525 -1.0252 9 6 1.8105 -5.7510 -1.8937 10 6 1.7477 -7.0181 -1.3859 11 6 1.7547 -7.1728 0.0110 12 6 1.6927 -8.4356 0.6216 13 7 1.7016 -8.5301 1.9306 14 6 1.7671 -7.4701 2.7246 15 6 1.8296 -6.2029 2.2319 16 6 1.8250 -6.0174 0.8348 17 7 1.8862 -4.8075 0.2855 18 6 2.0286 -2.2644 0.6967 19 6 2.0862 -0.8075 1.2025 20 1 1.4549 -0.6792 2.0817 21 7 3.4668 -0.4150 1.4963 22 6 4.0066 -0.6795 2.7266 23 1 3.4146 -1.1771 3.4804 24 6 5.3145 -0.3071 3.0052 25 7 6.0358 0.2997 2.0866 26 14 6.0513 -0.6686 4.6832 27 1 6.6989 -2.0048 4.6622 28 1 7.0635 0.3669 5.0129 29 1 4.9773 -0.6552 5.7087 30 1 -0.3634 0.4523 0.9227 31 1 -0.3633 0.5729 -0.8532 32 1 -0.3632 -1.0254 -0.0696 33 1 3.1629 1.4034 -0.0696 34 1 1.6697 1.9732 -0.8531 35 1 1.7823 1.9302 0.9228 36 1 3.1253 -0.5270 -1.3987 37 1 1.4765 -0.6455 -2.0859 38 1 1.8067 -5.5960 -2.9625 39 1 1.6940 -7.8762 -2.0395 40 1 1.6378 -9.3275 0.0151 41 1 1.7702 -7.6167 3.7945 42 1 1.8828 -5.3554 2.8992 43 1 1.1220 -2.7476 1.0608 44 1 2.9051 -2.8135 1.0408 45 1 3.9983 0.0322 0.8193 46 1 6.9497 0.5603 2.2814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996350490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:54 Heat of formation + Delta-G solvation = 58.788901 kcal Electronic energy + Delta-G solvation = -29852.269395 eV Core-core repulsion = 25935.624990 eV Total energy + Delta-G solvation = -3916.644404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.46860 -40.00887 -38.45394 -37.48048 -34.21406 -33.77594 -33.13651 -31.75401 -30.75062 -30.63690 -27.92612 -27.08430 -26.65571 -25.20480 -24.25151 -23.75466 -22.86852 -21.58388 -20.12770 -18.88775 -18.59795 -17.55017 -17.32525 -17.13089 -16.03311 -15.87650 -15.54150 -15.03190 -14.85621 -14.69834 -14.47942 -14.16429 -13.88762 -13.71596 -13.65179 -13.29520 -12.95763 -12.84478 -12.57858 -12.53804 -12.40130 -12.01873 -11.80981 -11.62863 -11.47236 -10.99795 -10.94347 -10.91633 -10.61053 -10.50650 -10.25830 -10.16095 -9.98715 -9.80979 -9.65057 -9.51075 -9.49887 -8.94148 -8.74231 -8.25405 -7.03382 -5.82645 -3.11823 -0.14050 0.34222 1.61460 2.35214 3.06182 3.26132 3.39639 3.45010 3.46763 3.82401 3.91366 4.09072 4.25025 4.42620 4.44930 4.53045 4.55915 4.81919 4.96753 5.07215 5.12140 5.23650 5.38326 5.41218 5.48256 5.52593 5.62949 5.66830 5.75141 5.79091 5.81109 5.88589 5.95995 6.10861 6.14095 6.19637 6.26541 6.34091 6.35305 6.38766 6.46295 6.62404 6.67881 6.89255 6.92650 7.43398 7.64256 7.65278 7.77506 8.25199 8.35537 9.47321 10.02399 10.37301 11.39686 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008925 B = 0.004329 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3136.383584 B = 6466.685307 C = 8632.914557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.089 4.089 3 C -0.125 4.125 4 C 0.118 3.882 5 N -0.577 5.577 6 C 0.571 3.429 7 O -0.545 6.545 8 C 0.146 3.854 9 C -0.130 4.130 10 C -0.043 4.043 11 C -0.155 4.155 12 C 0.154 3.846 13 N -0.484 5.484 14 C 0.083 3.917 15 C -0.127 4.127 16 C 0.150 3.850 17 N -0.429 5.429 18 C 0.089 3.911 19 C 0.173 3.827 20 H 0.069 0.931 21 N -0.713 5.713 22 C -0.241 4.241 23 H 0.071 0.929 24 C -0.009 4.009 25 N -0.930 5.930 26 Si 0.905 3.095 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.281 1.281 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.167 0.833 41 H 0.161 0.839 42 H 0.152 0.848 43 H 0.062 0.938 44 H 0.085 0.915 45 H 0.386 0.614 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.315 -12.118 -5.491 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.091 4.091 3 C -0.183 4.183 4 C -0.004 4.004 5 N -0.307 5.307 6 C 0.357 3.643 7 O -0.424 6.424 8 C -0.009 4.009 9 C -0.150 4.150 10 C -0.071 4.071 11 C -0.160 4.160 12 C -0.019 4.019 13 N -0.192 5.192 14 C -0.060 4.060 15 C -0.147 4.147 16 C 0.022 3.978 17 N -0.141 5.141 18 C -0.036 4.036 19 C 0.061 3.939 20 H 0.087 0.913 21 N -0.354 5.354 22 C -0.372 4.372 23 H 0.089 0.911 24 C -0.205 4.205 25 N -0.578 5.578 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.172 0.828 39 H 0.169 0.831 40 H 0.184 0.816 41 H 0.179 0.821 42 H 0.170 0.830 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.222 0.778 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.236 -12.140 -4.777 17.886 hybrid contribution 0.832 -0.047 -0.140 0.845 sum -11.403 -12.186 -4.917 17.399 Atomic orbital electron populations 1.21674 0.93943 1.01436 1.01618 1.22057 0.95299 0.96094 0.95633 1.21575 1.02109 0.93503 1.01074 1.22434 1.01359 0.79344 0.97250 1.48298 1.67920 1.05699 1.08808 1.17517 0.78383 0.82877 0.85473 1.90754 1.52552 1.85361 1.13689 1.21576 0.95189 0.94864 0.89306 1.21809 0.99103 0.91738 1.02382 1.21401 0.94427 0.97943 0.93309 1.19958 1.04210 0.96262 0.95532 1.23199 0.92560 0.95299 0.90878 1.67473 1.11671 1.34354 1.05664 1.22272 0.95994 0.87404 1.00326 1.21901 0.99771 0.99747 0.93266 1.19007 0.96261 0.88044 0.94473 1.68337 1.10043 1.23749 1.11939 1.23364 1.02090 1.01022 0.77128 1.21358 0.88576 0.89720 0.94230 0.91271 1.42450 1.08269 1.69957 1.14692 1.19203 0.95454 1.32094 0.90493 0.91067 1.24719 0.96848 1.01113 0.97832 1.69654 1.09505 1.45474 1.33174 0.86229 0.78912 0.77412 0.83842 1.21807 1.21804 1.20687 0.92241 0.92800 0.92938 0.91174 0.93619 0.92025 0.90782 0.90911 0.82847 0.83106 0.81605 0.82134 0.82988 0.91997 0.89721 0.77829 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 8.59 37.16 0.32 -1.37 16 2 C -0.09 -1.39 0.83 -152.24 -0.13 -1.52 16 3 C -0.12 -1.95 8.22 37.16 0.31 -1.65 16 4 C 0.12 1.96 5.82 -2.41 -0.01 1.95 16 5 N -0.58 -10.05 3.31 -171.29 -0.57 -10.62 16 6 C 0.57 9.97 7.85 -12.08 -0.09 9.88 16 7 O -0.55 -10.34 16.53 5.38 0.09 -10.25 16 8 C 0.15 2.23 6.73 -82.88 -0.56 1.67 16 9 C -0.13 -1.55 9.54 -39.42 -0.38 -1.93 16 10 C -0.04 -0.40 9.92 -39.28 -0.39 -0.79 16 11 C -0.16 -1.74 5.75 -106.74 -0.61 -2.35 16 12 C 0.15 1.49 11.05 -16.99 -0.19 1.30 16 13 N -0.48 -5.44 10.30 -13.18 -0.14 -5.58 16 14 C 0.08 0.90 11.06 -17.99 -0.20 0.70 16 15 C -0.13 -1.54 10.08 -39.32 -0.40 -1.94 16 16 C 0.15 2.05 6.63 -84.86 -0.56 1.49 16 17 N -0.43 -6.64 6.79 -7.49 -0.05 -6.69 16 18 C 0.09 1.59 4.81 -3.06 -0.01 1.58 16 19 C 0.17 3.21 2.86 -66.09 -0.19 3.02 16 20 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 21 N -0.71 -16.54 4.61 -51.65 -0.24 -16.78 16 22 C -0.24 -6.29 9.98 -15.06 -0.15 -6.44 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 25 N -0.93 -27.12 13.06 55.49 0.72 -26.40 16 26 Si 0.90 21.74 29.55 -169.99 -5.02 16.71 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.70 7.91 -51.93 -0.41 0.29 16 33 H 0.07 1.27 6.38 -51.93 -0.33 0.94 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.34 7.99 -51.93 -0.41 0.92 16 37 H 0.07 1.14 7.95 -51.93 -0.41 0.72 16 38 H 0.15 1.66 7.60 -52.49 -0.40 1.26 16 39 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.16 1.30 8.06 -52.49 -0.42 0.87 16 42 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.06 1.03 7.40 -51.93 -0.38 0.64 16 44 H 0.08 1.76 7.43 -51.93 -0.39 1.37 16 45 H 0.39 9.62 6.10 -40.82 -0.25 9.37 16 46 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 378.41 15.07 5.70 5.70 Total: -1.00 -31.88 378.41 -9.18 -41.05 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.33 Total: 9.59 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -3.34 Total: 3.26 kcal Atomic # 7 Polarization: -65.79 SS G_CDS: -0.27 Total: -66.06 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.88 -9.18 -41.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996350490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.842 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds