Wall clock time and date at job start Tue Mar 31 2020 23:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 110.88573 * 2 1 4 4 C 1.55131 * 111.19615 * 236.07328 * 2 1 3 5 5 N 1.47423 * 104.72171 * 279.19137 * 4 2 1 6 6 C 1.34777 * 125.64827 * 155.81497 * 5 4 2 7 7 O 1.21482 * 120.00416 * 359.71351 * 6 5 4 8 8 C 1.48382 * 119.99883 * 179.71332 * 6 5 4 9 9 C 1.40209 * 119.22008 * 179.97438 * 8 6 5 10 10 C 1.36649 * 119.90687 * 180.02562 * 9 8 6 11 11 C 1.40553 * 118.10753 * 0.02562 * 10 9 8 12 12 C 1.40408 * 122.06710 * 179.97438 * 11 10 9 13 13 N 1.31243 * 119.87542 * 180.02562 * 12 11 10 14 14 C 1.32600 * 122.68675 * 0.02562 * 13 12 11 15 15 C 1.36105 * 121.99133 * 0.02562 * 14 13 12 16 16 C 1.40943 * 118.76475 * 359.95888 * 15 14 13 17 17 N 1.31984 * 119.21986 * 0.02562 * 8 6 5 18 18 C 1.47025 * 108.70271 * 335.55006 * 5 4 2 19 19 C 1.54324 * 107.27019 * 1.28889 * 18 5 4 20 20 H 1.08997 * 110.72570 * 140.73692 * 19 18 5 21 21 N 1.46508 * 110.72010 * 263.83376 * 19 18 5 22 22 C 1.36933 * 119.99510 * 273.54472 * 21 19 18 23 23 H 1.07999 * 120.00180 * 359.97438 * 22 21 19 24 24 C 1.38813 * 119.99869 * 180.02562 * 22 21 19 25 25 N 1.31621 * 119.99804 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00285 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47585 * 89.99629 * 26 24 22 28 28 H 1.48502 * 109.47269 * 209.99859 * 26 24 22 29 29 H 1.48502 * 109.46971 * 329.99958 * 26 24 22 30 30 H 1.08997 * 109.47366 * 296.11073 * 1 2 3 31 31 H 1.08998 * 109.47135 * 56.12106 * 1 2 3 32 32 H 1.09002 * 109.46619 * 176.11509 * 1 2 3 33 33 H 1.08997 * 109.46915 * 183.88221 * 3 2 1 34 34 H 1.08994 * 109.47022 * 303.88437 * 3 2 1 35 35 H 1.09003 * 109.46409 * 63.88462 * 3 2 1 36 36 H 1.08999 * 110.50412 * 160.34418 * 4 2 1 37 37 H 1.09006 * 110.34256 * 37.95348 * 4 2 1 38 38 H 1.08000 * 120.04531 * 0.02562 * 9 8 6 39 39 H 1.07997 * 120.94214 * 180.02562 * 10 9 8 40 40 H 1.07995 * 120.05914 * 0.02562 * 12 11 10 41 41 H 1.07993 * 119.00604 * 179.97438 * 14 13 12 42 42 H 1.07999 * 120.61609 * 180.02562 * 15 14 13 43 43 H 1.08997 * 109.88520 * 120.70269 * 18 5 4 44 44 H 1.09003 * 109.88153 * 241.72285 * 18 5 4 45 45 H 0.96993 * 120.00158 * 93.54358 * 21 19 18 46 46 H 0.97004 * 119.99688 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0909 -0.8073 -1.2001 5 7 2.0140 -2.2161 -0.7727 6 6 1.9472 -3.2833 -1.5931 7 8 1.9420 -3.1243 -2.7974 8 6 1.8801 -4.6525 -1.0252 9 6 1.8105 -5.7510 -1.8937 10 6 1.7477 -7.0181 -1.3859 11 6 1.7547 -7.1728 0.0110 12 6 1.6927 -8.4356 0.6216 13 7 1.7016 -8.5301 1.9306 14 6 1.7671 -7.4701 2.7246 15 6 1.8296 -6.2029 2.2319 16 6 1.8250 -6.0174 0.8348 17 7 1.8862 -4.8075 0.2855 18 6 2.0286 -2.2644 0.6967 19 6 2.0862 -0.8075 1.2025 20 1 1.4549 -0.6792 2.0817 21 7 3.4668 -0.4150 1.4963 22 6 4.0066 -0.6795 2.7266 23 1 3.4146 -1.1771 3.4804 24 6 5.3145 -0.3071 3.0052 25 7 6.0358 0.2997 2.0866 26 14 6.0513 -0.6686 4.6832 27 1 6.6989 -2.0048 4.6622 28 1 7.0635 0.3669 5.0129 29 1 4.9773 -0.6552 5.7087 30 1 -0.3634 0.4523 0.9227 31 1 -0.3633 0.5729 -0.8532 32 1 -0.3632 -1.0254 -0.0696 33 1 3.1629 1.4034 -0.0696 34 1 1.6697 1.9732 -0.8531 35 1 1.7823 1.9302 0.9228 36 1 3.1253 -0.5270 -1.3987 37 1 1.4765 -0.6455 -2.0859 38 1 1.8067 -5.5960 -2.9625 39 1 1.6940 -7.8762 -2.0395 40 1 1.6378 -9.3275 0.0151 41 1 1.7702 -7.6167 3.7945 42 1 1.8828 -5.3554 2.8992 43 1 1.1220 -2.7476 1.0608 44 1 2.9051 -2.8135 1.0408 45 1 3.9983 0.0322 0.8193 46 1 6.9497 0.5603 2.2814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996350490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:53 Heat of formation + Delta-G solvation = 38.777177 kcal Electronic energy + Delta-G solvation = -29853.137168 eV Core-core repulsion = 25935.624990 eV Total energy + Delta-G solvation = -3917.512178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.42522 -41.30204 -39.65392 -38.63885 -35.79880 -35.02080 -34.40822 -32.73765 -32.59641 -31.50209 -29.47689 -28.28990 -28.00066 -26.31603 -25.62269 -25.11927 -23.78902 -23.04008 -21.33376 -20.29105 -19.58645 -19.10907 -18.60275 -18.27173 -17.31701 -17.15464 -16.76271 -16.49591 -15.88978 -15.81193 -15.74274 -15.46840 -15.37905 -14.93997 -14.76430 -14.47202 -14.18297 -14.06652 -13.83004 -13.72452 -13.56105 -13.24159 -13.18200 -13.05719 -12.84888 -12.78136 -12.68762 -12.17998 -12.07179 -11.91609 -11.80313 -11.49263 -11.46666 -11.24901 -11.05277 -10.82851 -10.47994 -10.44856 -9.70834 -9.58651 -8.99624 -7.92696 -5.20344 -1.06391 -0.55179 0.73943 1.27968 1.47351 1.47894 1.56156 1.79667 2.17039 2.56327 2.75139 2.97797 3.32202 3.36381 3.39347 3.44516 3.57947 3.59926 3.76459 3.80085 3.88843 3.99855 4.07247 4.25408 4.31596 4.48283 4.52607 4.56250 4.66294 4.68004 4.75215 4.77966 4.83694 4.88252 4.90225 4.99486 5.02915 5.07570 5.11011 5.24698 5.29127 5.35087 5.38709 5.53186 5.54486 5.59536 6.28622 6.34896 6.45265 6.82949 6.91543 7.36288 8.09943 8.33952 9.30663 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008925 B = 0.004329 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3136.383584 B = 6466.685307 C = 8632.914557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.076 4.076 3 C -0.119 4.119 4 C 0.118 3.882 5 N -0.583 5.583 6 C 0.566 3.434 7 O -0.566 6.566 8 C 0.122 3.878 9 C -0.144 4.144 10 C -0.011 4.011 11 C -0.165 4.165 12 C 0.172 3.828 13 N -0.502 5.502 14 C 0.093 3.907 15 C -0.152 4.152 16 C 0.126 3.874 17 N -0.460 5.460 18 C 0.112 3.888 19 C 0.165 3.835 20 H 0.075 0.925 21 N -0.722 5.722 22 C -0.232 4.232 23 H 0.078 0.922 24 C -0.071 4.071 25 N -0.969 5.969 26 Si 0.965 3.035 27 H -0.294 1.294 28 H -0.299 1.299 29 H -0.266 1.266 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.086 0.914 38 H 0.163 0.837 39 H 0.205 0.795 40 H 0.213 0.787 41 H 0.184 0.816 42 H 0.146 0.854 43 H 0.074 0.926 44 H 0.051 0.949 45 H 0.375 0.625 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.292 -14.658 -5.733 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.078 4.078 3 C -0.176 4.176 4 C -0.004 4.004 5 N -0.313 5.313 6 C 0.354 3.646 7 O -0.445 6.445 8 C -0.032 4.032 9 C -0.165 4.165 10 C -0.038 4.038 11 C -0.169 4.169 12 C -0.002 4.002 13 N -0.210 5.210 14 C -0.050 4.050 15 C -0.173 4.173 16 C -0.002 4.002 17 N -0.172 5.172 18 C -0.013 4.013 19 C 0.055 3.945 20 H 0.093 0.907 21 N -0.362 5.362 22 C -0.364 4.364 23 H 0.096 0.904 24 C -0.263 4.263 25 N -0.620 5.620 26 Si 0.795 3.205 27 H -0.222 1.222 28 H -0.226 1.226 29 H -0.190 1.190 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.181 0.819 39 H 0.222 0.778 40 H 0.229 0.771 41 H 0.201 0.799 42 H 0.164 0.836 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.209 0.791 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.269 -14.691 -5.007 21.083 hybrid contribution 1.378 0.595 -0.097 1.504 sum -12.891 -14.096 -5.104 19.772 Atomic orbital electron populations 1.21631 0.91211 1.01866 1.03203 1.22015 0.97172 0.95333 0.93238 1.21504 1.00138 0.93824 1.02169 1.22436 1.00373 0.79365 0.98276 1.48369 1.68234 1.06167 1.08540 1.18001 0.77474 0.83832 0.85303 1.90717 1.53458 1.85960 1.14405 1.21456 0.97286 0.94426 0.90038 1.21946 1.00198 0.91890 1.02425 1.21945 0.90468 0.98402 0.92996 1.20253 1.04178 0.96143 0.96313 1.23936 0.89584 0.95964 0.90683 1.67602 1.12648 1.34196 1.06528 1.22618 0.94098 0.86731 1.01530 1.21949 1.01966 1.00389 0.92976 1.19350 0.96886 0.88484 0.95434 1.68176 1.11399 1.25378 1.12242 1.22937 1.01105 0.99699 0.77564 1.21587 0.86434 0.90701 0.95820 0.90734 1.42582 1.10006 1.69936 1.13638 1.19586 0.95405 1.29993 0.91401 0.90377 1.25437 0.97633 1.02246 1.01025 1.69813 1.09413 1.47716 1.35010 0.85259 0.78151 0.76465 0.80628 1.22211 1.22569 1.19016 0.91092 0.90714 0.93161 0.94303 0.90735 0.92332 0.93115 0.89579 0.81902 0.77799 0.77070 0.79933 0.83649 0.90747 0.93076 0.79096 0.94273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 8.59 71.98 0.62 -2.32 16 2 C -0.08 -2.35 0.83 -50.71 -0.04 -2.40 16 3 C -0.12 -3.70 8.22 71.98 0.59 -3.10 16 4 C 0.12 3.98 5.82 86.93 0.51 4.48 16 5 N -0.58 -20.92 3.31 -814.14 -2.69 -23.61 16 6 C 0.57 20.26 7.85 86.95 0.68 20.95 16 7 O -0.57 -21.78 16.53 -3.66 -0.06 -21.84 16 8 C 0.12 3.76 6.73 42.30 0.28 4.04 16 9 C -0.14 -3.23 9.54 22.38 0.21 -3.02 16 10 C -0.01 -0.16 9.92 22.46 0.22 0.06 16 11 C -0.16 -3.26 5.75 -21.24 -0.12 -3.38 16 12 C 0.17 2.63 11.05 85.31 0.94 3.58 16 13 N -0.50 -9.86 10.30 -195.62 -2.02 -11.88 16 14 C 0.09 1.87 11.06 84.08 0.93 2.80 16 15 C -0.15 -3.71 10.08 22.44 0.23 -3.49 16 16 C 0.13 3.42 6.63 40.58 0.27 3.69 16 17 N -0.46 -14.55 6.79 -177.61 -1.21 -15.76 16 18 C 0.11 4.13 4.81 86.73 0.42 4.55 16 19 C 0.16 6.21 2.86 46.18 0.13 6.34 16 20 H 0.07 2.74 8.03 -2.39 -0.02 2.72 16 21 N -0.72 -34.70 4.61 -317.32 -1.46 -36.16 16 22 C -0.23 -12.37 9.98 84.03 0.84 -11.53 16 23 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 24 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 25 N -0.97 -58.65 13.06 21.65 0.28 -58.36 16 26 Si 0.96 45.65 29.55 68.60 2.03 47.68 16 27 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 28 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 29 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.25 7.91 -2.39 -0.02 1.23 16 33 H 0.04 1.45 6.38 -2.39 -0.02 1.44 16 34 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.05 1.94 7.99 -2.39 -0.02 1.92 16 37 H 0.09 2.67 7.95 -2.38 -0.02 2.65 16 38 H 0.16 3.27 7.60 -2.91 -0.02 3.25 16 39 H 0.21 0.87 8.06 -2.91 -0.02 0.85 16 40 H 0.21 1.19 8.06 -2.91 -0.02 1.16 16 41 H 0.18 2.64 8.06 -2.91 -0.02 2.62 16 42 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 43 H 0.07 2.53 7.40 -2.39 -0.02 2.52 16 44 H 0.05 2.24 7.43 -2.39 -0.02 2.22 16 45 H 0.38 19.67 6.10 -92.71 -0.57 19.10 16 46 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -72.77 378.41 2.49 -70.28 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 0.44 Total: 31.94 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 7.18 Total: 17.72 kcal Atomic # 7 Polarization: -138.68 SS G_CDS: -7.10 Total: -145.77 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.06 Total: -21.84 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -72.77 2.49 -70.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996350490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.057 kcal (2) G-P(sol) polarization free energy of solvation -72.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds