Wall clock time and date at job start Tue Mar 31 2020 23:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 110.88629 * 2 1 4 4 C 1.55127 * 111.19323 * 236.06897 * 2 1 3 5 5 N 1.47426 * 104.72327 * 279.19238 * 4 2 1 6 6 C 1.34783 * 125.64858 * 155.81410 * 5 4 2 7 7 O 1.21585 * 119.99954 * 4.55799 * 6 5 4 8 8 C 1.47506 * 119.99653 * 184.55371 * 6 5 4 9 9 C 1.38671 * 120.34328 * 312.98542 * 8 6 5 10 10 C 1.38991 * 120.63458 * 179.97438 * 9 8 6 11 11 C 1.36223 * 121.14086 * 0.02562 * 10 9 8 12 12 C 1.40685 * 120.16726 * 0.02562 * 11 10 9 13 13 N 1.33762 * 120.97409 * 179.97438 * 12 11 10 14 14 C 1.31331 * 119.72975 * 180.02562 * 13 12 11 15 15 C 1.39638 * 120.68663 * 359.97438 * 14 13 12 16 16 N 1.31445 * 120.64297 * 0.02562 * 15 14 13 17 17 C 1.33499 * 119.72160 * 359.97438 * 16 15 14 18 18 C 1.47021 * 108.70141 * 335.55152 * 5 4 2 19 19 C 1.54320 * 107.27351 * 1.28876 * 18 5 4 20 20 H 1.09006 * 110.72032 * 263.83138 * 19 18 5 21 21 N 1.46496 * 110.72473 * 140.73322 * 19 18 5 22 22 C 1.36935 * 120.00125 * 86.45093 * 21 19 18 23 23 H 1.07999 * 120.00192 * 0.02562 * 22 21 19 24 24 C 1.38818 * 120.00035 * 180.02562 * 22 21 19 25 25 N 1.31613 * 119.99770 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99815 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.46893 * 90.00078 * 26 24 22 28 28 H 1.48494 * 109.46830 * 209.99920 * 26 24 22 29 29 H 1.48499 * 109.47431 * 330.00211 * 26 24 22 30 30 H 1.09002 * 109.47160 * 296.11568 * 1 2 3 31 31 H 1.08998 * 109.47045 * 56.11683 * 1 2 3 32 32 H 1.09000 * 109.46943 * 176.11908 * 1 2 3 33 33 H 1.09007 * 109.47391 * 183.87954 * 3 2 1 34 34 H 1.08998 * 109.47660 * 303.87772 * 3 2 1 35 35 H 1.09005 * 109.47366 * 63.88546 * 3 2 1 36 36 H 1.08998 * 110.50150 * 160.34917 * 4 2 1 37 37 H 1.08999 * 110.34374 * 37.95164 * 4 2 1 38 38 H 1.07999 * 119.68384 * 0.02562 * 9 8 6 39 39 H 1.08002 * 119.42742 * 180.02562 * 10 9 8 40 40 H 1.08002 * 119.91104 * 180.02562 * 11 10 9 41 41 H 1.08007 * 119.65817 * 179.72065 * 14 13 12 42 42 H 1.08002 * 119.68303 * 180.02562 * 15 14 13 43 43 H 1.09003 * 109.88191 * 120.70410 * 18 5 4 44 44 H 1.09002 * 109.88490 * 241.71323 * 18 5 4 45 45 H 0.97004 * 119.99612 * 266.45638 * 21 19 18 46 46 H 0.97000 * 119.99905 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0908 -0.8073 -1.2001 5 7 2.0139 -2.2162 -0.7725 6 6 1.9471 -3.2835 -1.5929 7 8 2.0305 -3.1314 -2.7963 8 6 1.7728 -4.6360 -1.0307 9 6 2.5503 -5.0560 0.0380 10 6 2.3908 -6.3289 0.5728 11 6 1.4712 -7.1962 0.0650 12 6 0.6614 -6.8130 -1.0196 13 7 -0.2462 -7.6518 -1.5312 14 6 -0.9890 -7.2688 -2.5444 15 6 -0.8419 -5.9936 -3.0939 16 7 0.0435 -5.1525 -2.6075 17 6 0.8096 -5.5200 -1.5778 18 6 2.0285 -2.2644 0.6968 19 6 2.0861 -0.8076 1.2025 20 1 3.1133 -0.5155 1.4212 21 7 1.2376 -0.6351 2.3842 22 6 1.7368 -0.9036 3.6307 23 1 2.7563 -1.2421 3.7428 24 6 0.9326 -0.7407 4.7504 25 7 1.4123 -0.9993 5.9484 26 14 -0.8308 -0.1558 4.5566 27 1 -1.7261 -1.3290 4.3911 28 1 -1.2344 0.6084 5.7642 29 1 -0.9339 0.7181 3.3604 30 1 -0.3633 0.4524 0.9228 31 1 -0.3633 0.5729 -0.8531 32 1 -0.3633 -1.0253 -0.0696 33 1 3.1630 1.4034 -0.0695 34 1 1.6699 1.9732 -0.8532 35 1 1.7824 1.9302 0.9228 36 1 3.1253 -0.5271 -1.3986 37 1 1.4764 -0.6457 -2.0858 38 1 3.2863 -4.3873 0.4592 39 1 3.0065 -6.6356 1.4054 40 1 1.3637 -8.1805 0.4963 41 1 -1.7183 -7.9487 -2.9595 42 1 -1.4615 -5.6953 -3.9266 43 1 1.1218 -2.7476 1.0609 44 1 2.9049 -2.8137 1.0410 45 1 0.3221 -0.3307 2.2836 46 1 0.8505 -0.8851 6.7309 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996448258.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:57 Heat of formation + Delta-G solvation = 64.432005 kcal Electronic energy + Delta-G solvation = -29968.174270 eV Core-core repulsion = 26051.774569 eV Total energy + Delta-G solvation = -3916.399701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.64284 -40.10411 -38.17834 -37.26930 -34.86210 -34.28659 -33.29779 -31.22244 -31.04734 -30.89085 -28.03811 -27.19421 -26.58636 -25.58489 -24.34558 -23.95614 -23.09302 -21.23201 -19.64065 -19.13777 -18.91959 -18.01086 -17.68325 -17.05234 -16.49404 -15.86151 -15.44244 -15.19230 -15.17696 -14.68896 -14.49987 -14.30983 -14.13653 -13.74492 -13.50836 -13.36950 -12.76227 -12.66430 -12.58317 -12.29647 -12.11373 -12.07579 -11.89780 -11.80823 -11.73703 -11.68272 -11.41501 -11.37001 -11.05482 -10.64754 -10.61606 -10.35487 -10.04675 -9.92258 -9.65100 -9.21730 -9.19125 -9.05722 -8.75520 -8.37600 -7.43976 -5.89533 -3.26809 -0.12444 0.35673 1.56727 2.49311 2.86374 3.16455 3.27646 3.30886 3.37578 3.79420 3.85669 3.93450 4.07665 4.44161 4.47566 4.54603 4.68626 4.77676 4.88616 4.92626 4.98465 5.03816 5.07194 5.33994 5.40678 5.45480 5.53620 5.59156 5.61652 5.68889 5.78934 5.80271 5.86863 5.93712 5.96156 6.01623 6.10018 6.15434 6.20980 6.28836 6.39049 6.44329 6.47742 6.53651 6.71345 7.07228 7.53826 7.67904 7.85593 8.28905 8.29573 9.06473 9.78869 9.97401 11.28174 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011176 B = 0.003888 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.828373 B = 7199.529074 C = 8274.690546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 C -0.130 4.130 4 C 0.122 3.878 5 N -0.608 5.608 6 C 0.579 3.421 7 O -0.524 6.524 8 C -0.088 4.088 9 C -0.060 4.060 10 C -0.098 4.098 11 C -0.067 4.067 12 C 0.074 3.926 13 N -0.424 5.424 14 C 0.072 3.928 15 C 0.076 3.924 16 N -0.406 5.406 17 C 0.112 3.888 18 C 0.071 3.929 19 C 0.187 3.813 20 H 0.076 0.924 21 N -0.736 5.736 22 C -0.252 4.252 23 H 0.093 0.907 24 C 0.012 3.988 25 N -0.928 5.928 26 Si 0.877 3.123 27 H -0.283 1.283 28 H -0.289 1.289 29 H -0.276 1.276 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.175 0.825 42 H 0.175 0.825 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.366 0.634 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.080 -8.465 -15.637 17.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.091 4.091 3 C -0.187 4.187 4 C -0.001 4.001 5 N -0.342 5.342 6 C 0.366 3.634 7 O -0.400 6.400 8 C -0.093 4.093 9 C -0.080 4.080 10 C -0.117 4.117 11 C -0.087 4.087 12 C -0.050 4.050 13 N -0.138 5.138 14 C -0.103 4.103 15 C -0.100 4.100 16 N -0.119 5.119 17 C -0.013 4.013 18 C -0.055 4.055 19 C 0.075 3.925 20 H 0.094 0.906 21 N -0.379 5.379 22 C -0.382 4.382 23 H 0.111 0.889 24 C -0.184 4.184 25 N -0.575 5.575 26 Si 0.707 3.293 27 H -0.210 1.210 28 H -0.215 1.215 29 H -0.202 1.202 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.192 0.808 42 H 0.192 0.808 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.202 0.798 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.736 -8.432 -15.930 18.039 hybrid contribution -1.462 0.202 0.098 1.480 sum -2.199 -8.230 -15.832 17.978 Atomic orbital electron populations 1.21690 0.93991 1.01916 1.01691 1.22057 0.96214 0.95691 0.95141 1.21657 1.00609 0.94310 1.02162 1.22331 1.00782 0.79574 0.97394 1.48385 1.72038 1.05879 1.07896 1.17469 0.77160 0.83049 0.85682 1.90777 1.49728 1.85490 1.14016 1.19731 0.97653 0.94645 0.97234 1.21754 0.97475 0.96527 0.92235 1.21006 0.97969 0.92917 0.99852 1.20962 0.93521 1.00659 0.93515 1.19487 0.96666 0.91153 0.97738 1.68688 1.03120 1.33063 1.08904 1.24052 0.97486 0.96132 0.92642 1.24153 0.95275 0.91138 0.99414 1.68773 1.02430 1.33562 1.07165 1.19194 0.95855 0.92539 0.93715 1.23409 1.01846 1.02638 0.77613 1.21174 0.95634 0.89689 0.85977 0.90637 1.42859 1.12280 1.80658 1.02131 1.19066 0.98752 1.38631 0.81730 0.88948 1.24637 0.97583 1.01063 0.95127 1.69683 1.36145 1.54360 0.97292 0.86685 0.86653 0.78831 0.77117 1.20999 1.21515 1.20221 0.91781 0.92752 0.92609 0.92397 0.92918 0.91441 0.91248 0.90682 0.83473 0.83634 0.83849 0.80787 0.80830 0.90911 0.91650 0.79782 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 7.95 37.16 0.30 -1.75 16 2 C -0.09 -1.31 0.87 -152.24 -0.13 -1.45 16 3 C -0.13 -1.68 8.68 37.15 0.32 -1.36 16 4 C 0.12 1.75 5.83 -2.41 -0.01 1.74 16 5 N -0.61 -9.57 3.31 -171.62 -0.57 -10.14 16 6 C 0.58 9.90 7.15 -12.48 -0.09 9.81 16 7 O -0.52 -10.35 16.76 5.29 0.09 -10.26 16 8 C -0.09 -1.36 5.45 -104.63 -0.57 -1.93 16 9 C -0.06 -0.75 8.50 -39.14 -0.33 -1.08 16 10 C -0.10 -1.03 9.93 -40.03 -0.40 -1.43 16 11 C -0.07 -0.76 9.97 -39.38 -0.39 -1.15 16 12 C 0.07 1.01 6.59 -84.82 -0.56 0.45 16 13 N -0.42 -5.29 10.46 -10.82 -0.11 -5.40 16 14 C 0.07 0.70 11.21 -17.24 -0.19 0.51 16 15 C 0.08 0.82 11.22 -17.19 -0.19 0.62 16 16 N -0.41 -6.23 9.46 -10.59 -0.10 -6.33 16 17 C 0.11 1.74 6.57 -84.53 -0.56 1.18 16 18 C 0.07 1.14 5.06 -3.07 -0.02 1.12 16 19 C 0.19 3.23 2.84 -66.10 -0.19 3.04 16 20 H 0.08 1.32 8.02 -51.93 -0.42 0.90 16 21 N -0.74 -15.75 4.88 -51.65 -0.25 -16.01 16 22 C -0.25 -6.51 10.46 -15.06 -0.16 -6.67 16 23 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 24 C 0.01 0.34 5.50 -17.43 -0.10 0.25 16 25 N -0.93 -27.63 13.97 55.49 0.78 -26.86 16 26 Si 0.88 21.04 27.74 -169.99 -4.71 16.33 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 29 H -0.28 -6.19 6.52 56.52 0.37 -5.82 16 30 H 0.06 1.05 6.35 -51.93 -0.33 0.72 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.90 7.91 -51.93 -0.41 0.49 16 33 H 0.06 0.69 8.07 -51.92 -0.42 0.27 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.91 7.99 -51.93 -0.41 0.50 16 37 H 0.07 1.10 8.00 -51.93 -0.42 0.68 16 38 H 0.15 1.67 5.87 -52.49 -0.31 1.36 16 39 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.18 0.91 8.06 -52.48 -0.42 0.49 16 42 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.07 1.31 8.03 -51.93 -0.42 0.89 16 44 H 0.07 0.97 5.97 -51.93 -0.31 0.66 16 45 H 0.37 7.87 3.15 -40.82 -0.13 7.74 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 373.47 15.07 5.63 5.63 Total: -1.00 -34.18 373.47 -8.65 -42.83 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -6.12 Total: 8.32 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -3.27 Total: 1.90 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: -0.26 Total: -64.74 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.71 Total: 16.33 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.18 -8.65 -42.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996448258.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.261 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds