Wall clock time and date at job start Tue Mar 31 2020 23:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 110.88629 * 2 1 4 4 C 1.55127 * 111.19323 * 236.06897 * 2 1 3 5 5 N 1.47426 * 104.72327 * 279.19238 * 4 2 1 6 6 C 1.34783 * 125.64858 * 155.81410 * 5 4 2 7 7 O 1.21585 * 119.99954 * 4.55799 * 6 5 4 8 8 C 1.47506 * 119.99653 * 184.55371 * 6 5 4 9 9 C 1.38671 * 120.34328 * 312.98542 * 8 6 5 10 10 C 1.38991 * 120.63458 * 179.97438 * 9 8 6 11 11 C 1.36223 * 121.14086 * 0.02562 * 10 9 8 12 12 C 1.40685 * 120.16726 * 0.02562 * 11 10 9 13 13 N 1.33762 * 120.97409 * 179.97438 * 12 11 10 14 14 C 1.31331 * 119.72975 * 180.02562 * 13 12 11 15 15 C 1.39638 * 120.68663 * 359.97438 * 14 13 12 16 16 N 1.31445 * 120.64297 * 0.02562 * 15 14 13 17 17 C 1.33499 * 119.72160 * 359.97438 * 16 15 14 18 18 C 1.47021 * 108.70141 * 335.55152 * 5 4 2 19 19 C 1.54320 * 107.27351 * 1.28876 * 18 5 4 20 20 H 1.09006 * 110.72032 * 263.83138 * 19 18 5 21 21 N 1.46496 * 110.72473 * 140.73322 * 19 18 5 22 22 C 1.36935 * 120.00125 * 86.45093 * 21 19 18 23 23 H 1.07999 * 120.00192 * 0.02562 * 22 21 19 24 24 C 1.38818 * 120.00035 * 180.02562 * 22 21 19 25 25 N 1.31613 * 119.99770 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99815 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.46893 * 90.00078 * 26 24 22 28 28 H 1.48494 * 109.46830 * 209.99920 * 26 24 22 29 29 H 1.48499 * 109.47431 * 330.00211 * 26 24 22 30 30 H 1.09002 * 109.47160 * 296.11568 * 1 2 3 31 31 H 1.08998 * 109.47045 * 56.11683 * 1 2 3 32 32 H 1.09000 * 109.46943 * 176.11908 * 1 2 3 33 33 H 1.09007 * 109.47391 * 183.87954 * 3 2 1 34 34 H 1.08998 * 109.47660 * 303.87772 * 3 2 1 35 35 H 1.09005 * 109.47366 * 63.88546 * 3 2 1 36 36 H 1.08998 * 110.50150 * 160.34917 * 4 2 1 37 37 H 1.08999 * 110.34374 * 37.95164 * 4 2 1 38 38 H 1.07999 * 119.68384 * 0.02562 * 9 8 6 39 39 H 1.08002 * 119.42742 * 180.02562 * 10 9 8 40 40 H 1.08002 * 119.91104 * 180.02562 * 11 10 9 41 41 H 1.08007 * 119.65817 * 179.72065 * 14 13 12 42 42 H 1.08002 * 119.68303 * 180.02562 * 15 14 13 43 43 H 1.09003 * 109.88191 * 120.70410 * 18 5 4 44 44 H 1.09002 * 109.88490 * 241.71323 * 18 5 4 45 45 H 0.97004 * 119.99612 * 266.45638 * 21 19 18 46 46 H 0.97000 * 119.99905 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0908 -0.8073 -1.2001 5 7 2.0139 -2.2162 -0.7725 6 6 1.9471 -3.2835 -1.5929 7 8 2.0305 -3.1314 -2.7963 8 6 1.7728 -4.6360 -1.0307 9 6 2.5503 -5.0560 0.0380 10 6 2.3908 -6.3289 0.5728 11 6 1.4712 -7.1962 0.0650 12 6 0.6614 -6.8130 -1.0196 13 7 -0.2462 -7.6518 -1.5312 14 6 -0.9890 -7.2688 -2.5444 15 6 -0.8419 -5.9936 -3.0939 16 7 0.0435 -5.1525 -2.6075 17 6 0.8096 -5.5200 -1.5778 18 6 2.0285 -2.2644 0.6968 19 6 2.0861 -0.8076 1.2025 20 1 3.1133 -0.5155 1.4212 21 7 1.2376 -0.6351 2.3842 22 6 1.7368 -0.9036 3.6307 23 1 2.7563 -1.2421 3.7428 24 6 0.9326 -0.7407 4.7504 25 7 1.4123 -0.9993 5.9484 26 14 -0.8308 -0.1558 4.5566 27 1 -1.7261 -1.3290 4.3911 28 1 -1.2344 0.6084 5.7642 29 1 -0.9339 0.7181 3.3604 30 1 -0.3633 0.4524 0.9228 31 1 -0.3633 0.5729 -0.8531 32 1 -0.3633 -1.0253 -0.0696 33 1 3.1630 1.4034 -0.0695 34 1 1.6699 1.9732 -0.8532 35 1 1.7824 1.9302 0.9228 36 1 3.1253 -0.5271 -1.3986 37 1 1.4764 -0.6457 -2.0858 38 1 3.2863 -4.3873 0.4592 39 1 3.0065 -6.6356 1.4054 40 1 1.3637 -8.1805 0.4963 41 1 -1.7183 -7.9487 -2.9595 42 1 -1.4615 -5.6953 -3.9266 43 1 1.1218 -2.7476 1.0609 44 1 2.9049 -2.8137 1.0410 45 1 0.3221 -0.3307 2.2836 46 1 0.8505 -0.8851 6.7309 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996448258.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:56 Heat of formation + Delta-G solvation = 41.143760 kcal Electronic energy + Delta-G solvation = -29969.184124 eV Core-core repulsion = 26051.774569 eV Total energy + Delta-G solvation = -3917.409555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.57802 -41.35395 -39.43443 -38.27258 -35.99375 -35.79248 -34.67362 -33.08676 -31.92984 -31.88966 -29.57011 -28.38469 -27.71273 -26.51053 -25.65150 -25.20893 -24.31100 -22.66383 -20.80771 -20.46749 -19.93844 -19.44635 -19.01051 -18.03887 -17.71501 -17.10265 -16.63501 -16.47976 -16.19137 -16.07887 -15.74671 -15.47608 -15.24584 -15.00325 -14.80431 -14.65889 -14.35414 -13.93880 -13.87120 -13.47562 -13.31025 -13.11169 -13.02725 -12.99238 -12.86309 -12.78245 -12.73350 -12.67750 -12.61661 -12.19311 -11.97016 -11.92236 -11.63791 -11.39392 -11.21269 -10.95517 -10.13093 -10.07976 -9.80730 -9.61557 -9.34184 -8.00854 -5.34389 -1.03949 -0.52729 0.59135 1.36434 1.38007 1.44928 1.50851 1.72495 1.99259 2.47638 2.91587 2.98107 3.07063 3.10003 3.28811 3.34574 3.53413 3.63711 3.69773 3.72823 3.89892 3.99533 4.04195 4.19421 4.21212 4.30751 4.34167 4.38199 4.49457 4.63958 4.70136 4.73793 4.79698 4.84608 4.93099 4.94757 5.02106 5.07690 5.11782 5.14166 5.16304 5.25069 5.32787 5.47880 5.55181 5.80394 6.19630 6.23054 6.38152 6.66835 7.00894 7.08415 7.83031 8.01262 9.19964 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011176 B = 0.003888 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.828373 B = 7199.529074 C = 8274.690546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.080 4.080 3 C -0.126 4.126 4 C 0.122 3.878 5 N -0.606 5.606 6 C 0.580 3.420 7 O -0.558 6.558 8 C -0.124 4.124 9 C -0.056 4.056 10 C -0.098 4.098 11 C -0.063 4.063 12 C 0.053 3.947 13 N -0.440 5.440 14 C 0.084 3.916 15 C 0.082 3.918 16 N -0.455 5.455 17 C 0.087 3.913 18 C 0.083 3.917 19 C 0.179 3.821 20 H 0.077 0.923 21 N -0.738 5.738 22 C -0.225 4.225 23 H 0.070 0.930 24 C -0.051 4.051 25 N -0.977 5.977 26 Si 0.933 3.067 27 H -0.285 1.285 28 H -0.297 1.297 29 H -0.252 1.252 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.155 0.845 39 H 0.179 0.821 40 H 0.168 0.832 41 H 0.223 0.777 42 H 0.211 0.789 43 H 0.053 0.947 44 H 0.078 0.922 45 H 0.368 0.632 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 -9.043 -17.330 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.081 4.081 3 C -0.184 4.184 4 C 0.000 4.000 5 N -0.338 5.338 6 C 0.369 3.631 7 O -0.437 6.437 8 C -0.128 4.128 9 C -0.076 4.076 10 C -0.117 4.117 11 C -0.082 4.082 12 C -0.070 4.070 13 N -0.154 5.154 14 C -0.092 4.092 15 C -0.094 4.094 16 N -0.169 5.169 17 C -0.038 4.038 18 C -0.042 4.042 19 C 0.069 3.931 20 H 0.095 0.905 21 N -0.381 5.381 22 C -0.356 4.356 23 H 0.088 0.912 24 C -0.244 4.244 25 N -0.628 5.628 26 Si 0.762 3.238 27 H -0.212 1.212 28 H -0.224 1.224 29 H -0.176 1.176 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.172 0.828 39 H 0.196 0.804 40 H 0.185 0.815 41 H 0.240 0.760 42 H 0.228 0.772 43 H 0.072 0.928 44 H 0.096 0.904 45 H 0.204 0.796 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.643 -8.993 -17.660 19.886 hybrid contribution -1.186 0.277 0.474 1.306 sum -2.829 -8.716 -17.186 19.476 Atomic orbital electron populations 1.21673 0.94169 1.01194 1.02054 1.22018 0.96026 0.96551 0.93550 1.21646 1.01480 0.92836 1.02421 1.22431 1.01770 0.78730 0.97064 1.48378 1.71632 1.06384 1.07442 1.17767 0.76221 0.83856 0.85287 1.90734 1.51499 1.86145 1.15361 1.19766 0.99741 0.94186 0.99143 1.21950 0.96779 0.97557 0.91318 1.21345 0.98114 0.91870 1.00378 1.21328 0.92651 1.01657 0.92569 1.19769 0.97689 0.90882 0.98648 1.68773 1.03601 1.32981 1.10069 1.24844 0.96907 0.96292 0.91134 1.24901 0.93960 0.91086 0.99461 1.68746 1.04252 1.35630 1.08313 1.19376 0.96505 0.93405 0.94465 1.23109 1.01509 1.01602 0.77986 1.21372 0.95221 0.90884 0.85638 0.90491 1.42825 1.12795 1.80658 1.01864 1.19058 0.97524 1.35713 0.83317 0.91227 1.25280 1.01450 1.02693 0.94930 1.69836 1.37625 1.57197 0.98109 0.85748 0.82042 0.78511 0.77524 1.21201 1.22375 1.17627 0.92980 0.90403 0.94192 0.91202 0.90615 0.92882 0.89604 0.90680 0.82770 0.80375 0.81464 0.76029 0.77217 0.92818 0.90417 0.79614 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 7.95 71.98 0.57 -3.25 16 2 C -0.08 -2.22 0.87 -50.71 -0.04 -2.26 16 3 C -0.13 -2.97 8.68 71.98 0.62 -2.34 16 4 C 0.12 3.34 5.83 86.93 0.51 3.85 16 5 N -0.61 -18.88 3.31 -815.14 -2.70 -21.57 16 6 C 0.58 20.11 7.15 86.69 0.62 20.73 16 7 O -0.56 -22.51 16.76 -3.98 -0.07 -22.58 16 8 C -0.12 -3.88 5.45 -19.87 -0.11 -3.99 16 9 C -0.06 -1.39 8.50 22.55 0.19 -1.20 16 10 C -0.10 -1.94 9.93 21.98 0.22 -1.72 16 11 C -0.06 -1.34 9.97 22.40 0.22 -1.12 16 12 C 0.05 1.41 6.59 40.28 0.27 1.68 16 13 N -0.44 -10.24 10.46 -188.16 -1.97 -12.21 16 14 C 0.08 1.41 11.21 85.11 0.95 2.37 16 15 C 0.08 1.63 11.22 85.09 0.95 2.58 16 16 N -0.46 -13.97 9.46 -187.42 -1.77 -15.74 16 17 C 0.09 2.70 6.57 40.58 0.27 2.97 16 18 C 0.08 2.67 5.06 86.73 0.44 3.11 16 19 C 0.18 6.03 2.84 46.18 0.13 6.16 16 20 H 0.08 2.61 8.02 -2.38 -0.02 2.59 16 21 N -0.74 -31.14 4.88 -317.32 -1.55 -32.69 16 22 C -0.23 -11.69 10.46 84.04 0.88 -10.81 16 23 H 0.07 3.89 8.06 -2.91 -0.02 3.87 16 24 C -0.05 -2.86 5.50 84.86 0.47 -2.39 16 25 N -0.98 -59.57 13.97 21.65 0.30 -59.27 16 26 Si 0.93 43.54 27.74 68.60 1.90 45.44 16 27 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 28 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 29 H -0.25 -10.56 6.52 99.48 0.65 -9.91 16 30 H 0.05 1.62 6.35 -2.39 -0.02 1.60 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.04 1.25 7.91 -2.39 -0.02 1.24 16 33 H 0.07 1.48 8.07 -2.38 -0.02 1.46 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.09 2.09 7.99 -2.39 -0.02 2.07 16 37 H 0.07 2.09 8.00 -2.39 -0.02 2.07 16 38 H 0.15 3.43 5.87 -2.91 -0.02 3.42 16 39 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 41 H 0.22 1.35 8.06 -2.91 -0.02 1.33 16 42 H 0.21 2.30 8.06 -2.91 -0.02 2.28 16 43 H 0.05 1.95 8.03 -2.39 -0.02 1.93 16 44 H 0.08 2.28 5.97 -2.39 -0.01 2.26 16 45 H 0.37 15.38 3.15 -92.70 -0.29 15.09 16 46 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -77.21 373.47 1.97 -75.24 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.66 Total: 29.04 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 7.16 Total: 14.34 kcal Atomic # 7 Polarization: -133.80 SS G_CDS: -7.69 Total: -141.48 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.07 Total: -22.58 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.90 Total: 45.44 kcal Total: -77.21 1.97 -75.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996448258.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.379 kcal (2) G-P(sol) polarization free energy of solvation -77.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds