Wall clock time and date at job start Tue Mar 31 2020 23:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40162 * 120.29687 * 2 1 4 4 C 1.35180 * 120.32046 * 180.02562 * 3 2 1 5 5 N 1.36240 * 120.70500 * 359.95776 * 4 3 2 6 6 N 1.40022 * 132.01226 * 180.02562 * 5 4 3 7 7 C 1.30735 * 109.60481 * 180.02562 * 6 5 4 8 8 C 1.40549 * 108.74725 * 359.79177 * 7 6 5 9 9 C 1.46569 * 126.58101 * 180.02562 * 8 7 6 10 10 O 1.21724 * 119.99879 * 180.39560 * 9 8 7 11 11 N 1.34770 * 120.00055 * 0.39264 * 9 8 7 12 12 C 1.46497 * 120.00235 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.47353 * 179.97438 * 12 11 9 14 14 C 1.29451 * 117.69285 * 94.99863 * 13 12 11 15 15 C 1.50327 * 123.64995 * 180.85694 * 14 13 12 16 16 N 1.47005 * 109.16452 * 349.02544 * 15 14 13 17 17 C 1.36938 * 121.37328 * 222.96825 * 16 15 14 18 18 H 1.08004 * 120.00025 * 155.96934 * 17 16 15 19 19 C 1.38808 * 119.99879 * 335.96459 * 17 16 15 20 20 N 1.31613 * 120.00371 * 344.52701 * 19 17 16 21 21 Si 1.86800 * 119.99895 * 164.52740 * 19 17 16 22 22 H 1.48499 * 109.47397 * 60.00058 * 21 19 17 23 23 H 1.48495 * 109.47374 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46926 * 299.99875 * 21 19 17 25 25 C 1.47341 * 117.25079 * 42.94599 * 16 15 14 26 26 C 1.49967 * 117.69239 * 274.73863 * 13 12 11 27 27 C 1.36573 * 120.08380 * 0.02562 * 5 4 3 28 28 C 1.36448 * 120.29690 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46898 * 89.99582 * 1 2 3 30 30 H 1.09000 * 109.47042 * 209.99267 * 1 2 3 31 31 H 1.08995 * 109.47169 * 329.99725 * 1 2 3 32 32 H 1.07998 * 119.83469 * 0.02562 * 3 2 1 33 33 H 1.08003 * 119.65040 * 179.97438 * 4 3 2 34 34 H 1.08006 * 125.62511 * 180.02562 * 7 6 5 35 35 H 0.97002 * 119.99802 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47027 * 299.99850 * 12 11 9 37 37 H 1.09002 * 109.47302 * 59.99683 * 12 11 9 38 38 H 1.07994 * 118.17398 * 0.88131 * 14 13 12 39 39 H 1.09000 * 109.51733 * 108.93003 * 15 14 13 40 40 H 1.08991 * 109.52222 * 229.11513 * 15 14 13 41 41 H 0.96995 * 120.00734 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.78070 * 57.81340 * 25 16 15 43 43 H 1.09001 * 109.77994 * 178.61989 * 25 16 15 44 44 H 1.09004 * 109.31504 * 281.28953 * 26 13 12 45 45 H 1.09000 * 109.31252 * 40.71524 * 26 13 12 46 46 H 1.08002 * 120.37223 * 0.04294 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.2102 0.0000 4 6 3.5659 1.2107 -0.0005 5 7 4.2621 0.0396 -0.0002 6 7 5.6352 -0.2343 -0.0001 7 6 5.8244 -1.5279 -0.0003 8 6 4.5729 -2.1675 0.0043 9 6 4.3307 -3.6130 0.0062 10 8 3.1904 -4.0391 0.0031 11 7 5.3704 -4.4705 0.0115 12 6 5.1283 -5.9153 0.0128 13 6 6.4466 -6.6456 0.0182 14 6 6.9207 -7.0228 1.1622 15 6 8.2304 -7.7426 1.3247 16 7 8.7173 -8.1629 0.0029 17 6 9.2548 -9.4065 -0.1965 18 1 9.2479 -9.8459 -1.1831 19 6 9.8084 -10.1024 0.8693 20 7 10.0965 -9.4721 1.9882 21 14 10.1445 -11.9335 0.7156 22 1 11.0955 -12.1703 -0.4001 23 1 10.7324 -12.4370 1.9829 24 1 8.8723 -12.6490 0.4420 25 6 8.6028 -7.1911 -1.0986 26 6 7.1138 -6.8893 -1.3026 27 6 3.5960 -1.1527 0.0001 28 6 2.1954 -1.1781 0.0005 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5137 31 1 -0.3633 0.8899 0.5138 32 1 1.6763 2.1467 0.0004 33 1 4.0998 2.1496 -0.0009 34 1 6.7841 -2.0234 0.0001 35 1 6.2790 -4.1310 0.0143 36 1 4.5582 -6.1874 0.9011 37 1 4.5648 -6.1902 -0.8788 38 1 6.3430 -6.8088 2.0492 39 1 8.9582 -7.0748 1.7856 40 1 8.0882 -8.6194 1.9563 41 1 10.4837 -9.9583 2.7329 42 1 9.1365 -6.2764 -0.8406 43 1 9.0196 -7.6171 -2.0113 44 1 6.6354 -7.7344 -1.7977 45 1 7.0098 -6.0027 -1.9280 46 1 1.6663 -2.1197 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000807253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:37 Heat of formation + Delta-G solvation = 103.891671 kcal Electronic energy + Delta-G solvation = -28109.493648 eV Core-core repulsion = 24194.805047 eV Total energy + Delta-G solvation = -3914.688601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.46216 -39.34481 -37.98492 -37.60714 -34.84627 -33.93607 -32.83037 -31.69108 -30.95341 -29.90786 -29.57096 -27.78899 -26.61983 -24.48679 -23.84004 -22.81582 -22.53021 -22.19727 -21.03039 -20.18268 -18.29896 -17.60951 -17.12179 -16.77403 -16.14288 -15.79305 -15.66207 -15.36928 -15.09766 -14.95464 -14.69058 -14.09404 -13.94587 -13.75127 -13.69683 -13.54302 -13.31589 -13.04289 -12.88733 -12.38171 -12.22510 -12.21709 -12.02359 -11.83162 -11.54751 -11.33380 -11.16557 -10.89303 -10.72398 -10.64539 -10.38345 -10.31353 -9.85825 -9.82205 -9.70893 -9.57421 -8.89027 -8.67079 -8.03880 -7.93672 -6.74180 -5.79375 -3.18151 0.26682 0.63932 1.79872 1.95413 2.66039 2.82090 3.39572 3.45211 3.46615 3.54248 3.60180 3.92958 4.10111 4.19419 4.42806 4.49932 4.67137 4.78915 4.96903 4.99752 5.10925 5.15084 5.25936 5.30089 5.37886 5.43057 5.44624 5.57731 5.63603 5.88066 5.89754 5.98414 6.00574 6.07993 6.13959 6.19996 6.35309 6.43760 6.50783 6.62502 6.75124 6.88402 7.12192 7.18718 7.27623 7.34983 7.72136 7.74758 7.83693 8.38516 8.41513 9.19877 9.82669 10.40680 11.31059 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029186 B = 0.001956 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.143084 B =14308.449933 C =14743.486186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.045 4.045 3 C -0.158 4.158 4 C 0.113 3.887 5 N -0.270 5.270 6 N -0.320 5.320 7 C 0.121 3.879 8 C -0.311 4.311 9 C 0.596 3.404 10 O -0.559 6.559 11 N -0.718 5.718 12 C 0.161 3.839 13 C -0.166 4.166 14 C -0.125 4.125 15 C 0.194 3.806 16 N -0.595 5.595 17 C -0.246 4.246 18 H 0.068 0.932 19 C -0.001 4.001 20 N -0.910 5.910 21 Si 0.905 3.095 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.144 3.856 26 C -0.090 4.090 27 C 0.166 3.834 28 C -0.110 4.110 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.157 0.843 33 H 0.172 0.828 34 H 0.200 0.800 35 H 0.399 0.601 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.041 0.959 40 H 0.093 0.907 41 H 0.254 0.746 42 H 0.023 0.977 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.053 0.947 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.723 23.234 -3.602 28.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.050 4.050 3 C -0.180 4.180 4 C -0.013 4.013 5 N -0.035 5.035 6 N -0.140 5.140 7 C -0.059 4.059 8 C -0.326 4.326 9 C 0.384 3.616 10 O -0.439 6.439 11 N -0.368 5.368 12 C 0.038 3.962 13 C -0.167 4.167 14 C -0.146 4.146 15 C 0.069 3.931 16 N -0.318 5.318 17 C -0.375 4.375 18 H 0.086 0.914 19 C -0.199 4.199 20 N -0.555 5.555 21 Si 0.735 3.265 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.017 3.983 26 C -0.129 4.129 27 C 0.046 3.954 28 C -0.129 4.129 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.175 0.825 33 H 0.190 0.810 34 H 0.217 0.783 35 H 0.233 0.767 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.059 0.941 40 H 0.111 0.889 41 H 0.064 0.936 42 H 0.041 0.959 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.703 23.924 -3.459 29.383 hybrid contribution 0.374 -1.484 0.077 1.533 sum -16.330 22.440 -3.382 27.958 Atomic orbital electron populations 1.20847 0.89406 1.03769 1.03253 1.20076 0.97436 0.92134 0.95398 1.20837 0.91839 0.99674 1.05618 1.21551 0.92037 0.88382 0.99378 1.46087 1.06443 1.05315 1.45621 1.77603 0.87959 1.17061 1.31401 1.24138 0.98861 0.90414 0.92504 1.19758 0.91366 0.93593 1.27846 1.16857 0.84801 0.84084 0.75826 1.90745 1.21901 1.79141 1.52116 1.45897 1.08870 1.06694 1.75310 1.20424 0.95780 0.78143 1.01813 1.20506 0.96407 1.03579 0.96179 1.23284 0.98977 0.96151 0.96143 1.19758 0.87586 0.97528 0.88227 1.44120 1.70511 1.12420 1.04783 1.19138 1.31508 0.91433 0.95456 0.91417 1.24985 0.98794 0.98764 0.97391 1.69990 1.46183 1.34487 1.04863 0.86321 0.78010 0.85351 0.76811 1.20941 1.21648 1.21071 1.20993 0.92108 0.92760 0.92415 1.20789 0.98610 0.99871 0.93645 1.19293 0.92991 0.85665 0.97496 1.20762 0.89979 1.00260 1.01918 0.90130 0.90496 0.90751 0.82500 0.81032 0.78328 0.76707 0.91691 0.91628 0.88764 0.94115 0.88924 0.93551 0.95851 0.92502 0.91735 0.92861 0.82155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 10.03 36.01 0.36 -0.15 16 2 C -0.05 -0.32 5.89 -104.54 -0.62 -0.94 16 3 C -0.16 -0.88 9.67 -39.95 -0.39 -1.27 16 4 C 0.11 0.82 11.17 -16.68 -0.19 0.63 16 5 N -0.27 -3.01 3.86 -10.55 -0.04 -3.05 16 6 N -0.32 -3.89 12.57 30.75 0.39 -3.50 16 7 C 0.12 1.38 11.44 -17.15 -0.20 1.18 16 8 C -0.31 -4.10 6.17 -104.68 -0.65 -4.75 16 9 C 0.60 8.88 7.78 -12.90 -0.10 8.78 16 10 O -0.56 -9.85 15.71 5.17 0.08 -9.77 16 11 N -0.72 -9.82 5.54 -62.83 -0.35 -10.17 16 12 C 0.16 2.46 5.66 -5.19 -0.03 2.43 16 13 C -0.17 -2.84 5.22 -100.99 -0.53 -3.36 16 14 C -0.12 -2.36 9.47 -35.78 -0.34 -2.70 16 15 C 0.19 4.55 5.23 -5.10 -0.03 4.52 16 16 N -0.60 -14.72 3.01 -173.56 -0.52 -15.25 16 17 C -0.25 -6.70 9.71 -15.06 -0.15 -6.85 16 18 H 0.07 1.81 7.88 -52.48 -0.41 1.39 16 19 C 0.00 -0.04 5.01 -17.43 -0.09 -0.13 16 20 N -0.91 -26.08 11.08 55.49 0.61 -25.47 16 21 Si 0.91 21.70 29.58 -169.99 -5.03 16.67 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.14 2.92 6.59 -3.43 -0.02 2.90 16 26 C -0.09 -1.55 5.95 -28.09 -0.17 -1.72 16 27 C 0.17 2.05 6.76 -84.07 -0.57 1.49 16 28 C -0.11 -1.14 9.38 -39.53 -0.37 -1.51 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.35 8.09 -51.93 -0.42 -0.07 16 31 H 0.07 0.20 8.10 -51.93 -0.42 -0.22 16 32 H 0.16 0.32 8.06 -52.49 -0.42 -0.11 16 33 H 0.17 0.73 8.06 -52.48 -0.42 0.31 16 34 H 0.20 1.62 7.46 -52.48 -0.39 1.22 16 35 H 0.40 4.71 7.38 -40.82 -0.30 4.41 16 36 H 0.06 1.03 7.78 -51.93 -0.40 0.62 16 37 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 38 H 0.09 1.62 7.73 -52.49 -0.41 1.21 16 39 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.09 2.43 6.41 -51.93 -0.33 2.10 16 41 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.16 1.79 7.12 -52.49 -0.37 1.42 16 LS Contribution 382.94 15.07 5.77 5.77 Total: -1.00 -33.99 382.94 -9.53 -43.52 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -6.39 Total: 2.67 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -4.05 Total: -1.43 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.09 Total: -57.43 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.99 -9.53 -43.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000807253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.409 kcal (2) G-P(sol) polarization free energy of solvation -33.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds