Wall clock time and date at job start Tue Mar 31 2020 23:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40162 * 120.29687 * 2 1 4 4 C 1.35180 * 120.32046 * 180.02562 * 3 2 1 5 5 N 1.36240 * 120.70500 * 359.95776 * 4 3 2 6 6 N 1.40022 * 132.01226 * 180.02562 * 5 4 3 7 7 C 1.30735 * 109.60481 * 180.02562 * 6 5 4 8 8 C 1.40549 * 108.74725 * 359.79177 * 7 6 5 9 9 C 1.46569 * 126.58101 * 180.02562 * 8 7 6 10 10 O 1.21724 * 119.99879 * 180.39560 * 9 8 7 11 11 N 1.34770 * 120.00055 * 0.39264 * 9 8 7 12 12 C 1.46497 * 120.00235 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.47353 * 179.97438 * 12 11 9 14 14 C 1.29451 * 117.69285 * 94.99863 * 13 12 11 15 15 C 1.50327 * 123.64995 * 180.85694 * 14 13 12 16 16 N 1.47005 * 109.16452 * 349.02544 * 15 14 13 17 17 C 1.36938 * 121.37328 * 222.96825 * 16 15 14 18 18 H 1.08004 * 120.00025 * 155.96934 * 17 16 15 19 19 C 1.38808 * 119.99879 * 335.96459 * 17 16 15 20 20 N 1.31613 * 120.00371 * 344.52701 * 19 17 16 21 21 Si 1.86800 * 119.99895 * 164.52740 * 19 17 16 22 22 H 1.48499 * 109.47397 * 60.00058 * 21 19 17 23 23 H 1.48495 * 109.47374 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46926 * 299.99875 * 21 19 17 25 25 C 1.47341 * 117.25079 * 42.94599 * 16 15 14 26 26 C 1.49967 * 117.69239 * 274.73863 * 13 12 11 27 27 C 1.36573 * 120.08380 * 0.02562 * 5 4 3 28 28 C 1.36448 * 120.29690 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46898 * 89.99582 * 1 2 3 30 30 H 1.09000 * 109.47042 * 209.99267 * 1 2 3 31 31 H 1.08995 * 109.47169 * 329.99725 * 1 2 3 32 32 H 1.07998 * 119.83469 * 0.02562 * 3 2 1 33 33 H 1.08003 * 119.65040 * 179.97438 * 4 3 2 34 34 H 1.08006 * 125.62511 * 180.02562 * 7 6 5 35 35 H 0.97002 * 119.99802 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47027 * 299.99850 * 12 11 9 37 37 H 1.09002 * 109.47302 * 59.99683 * 12 11 9 38 38 H 1.07994 * 118.17398 * 0.88131 * 14 13 12 39 39 H 1.09000 * 109.51733 * 108.93003 * 15 14 13 40 40 H 1.08991 * 109.52222 * 229.11513 * 15 14 13 41 41 H 0.96995 * 120.00734 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.78070 * 57.81340 * 25 16 15 43 43 H 1.09001 * 109.77994 * 178.61989 * 25 16 15 44 44 H 1.09004 * 109.31504 * 281.28953 * 26 13 12 45 45 H 1.09000 * 109.31252 * 40.71524 * 26 13 12 46 46 H 1.08002 * 120.37223 * 0.04294 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.2102 0.0000 4 6 3.5659 1.2107 -0.0005 5 7 4.2621 0.0396 -0.0002 6 7 5.6352 -0.2343 -0.0001 7 6 5.8244 -1.5279 -0.0003 8 6 4.5729 -2.1675 0.0043 9 6 4.3307 -3.6130 0.0062 10 8 3.1904 -4.0391 0.0031 11 7 5.3704 -4.4705 0.0115 12 6 5.1283 -5.9153 0.0128 13 6 6.4466 -6.6456 0.0182 14 6 6.9207 -7.0228 1.1622 15 6 8.2304 -7.7426 1.3247 16 7 8.7173 -8.1629 0.0029 17 6 9.2548 -9.4065 -0.1965 18 1 9.2479 -9.8459 -1.1831 19 6 9.8084 -10.1024 0.8693 20 7 10.0965 -9.4721 1.9882 21 14 10.1445 -11.9335 0.7156 22 1 11.0955 -12.1703 -0.4001 23 1 10.7324 -12.4370 1.9829 24 1 8.8723 -12.6490 0.4420 25 6 8.6028 -7.1911 -1.0986 26 6 7.1138 -6.8893 -1.3026 27 6 3.5960 -1.1527 0.0001 28 6 2.1954 -1.1781 0.0005 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5137 31 1 -0.3633 0.8899 0.5138 32 1 1.6763 2.1467 0.0004 33 1 4.0998 2.1496 -0.0009 34 1 6.7841 -2.0234 0.0001 35 1 6.2790 -4.1310 0.0143 36 1 4.5582 -6.1874 0.9011 37 1 4.5648 -6.1902 -0.8788 38 1 6.3430 -6.8088 2.0492 39 1 8.9582 -7.0748 1.7856 40 1 8.0882 -8.6194 1.9563 41 1 10.4837 -9.9583 2.7329 42 1 9.1365 -6.2764 -0.8406 43 1 9.0196 -7.6171 -2.0113 44 1 6.6354 -7.7344 -1.7977 45 1 7.0098 -6.0027 -1.9280 46 1 1.6663 -2.1197 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000807253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:36 Heat of formation + Delta-G solvation = 82.809713 kcal Electronic energy + Delta-G solvation = -28110.407830 eV Core-core repulsion = 24194.805047 eV Total energy + Delta-G solvation = -3915.602784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.21997 -40.51401 -39.25242 -38.59581 -36.34844 -34.68364 -34.40620 -32.63432 -32.40702 -31.42889 -30.54074 -28.77523 -27.88624 -25.96517 -24.71452 -24.34938 -23.59862 -22.99472 -22.59440 -21.20333 -19.52343 -19.11699 -17.90791 -17.69247 -17.21077 -16.97402 -16.90866 -16.80642 -16.07434 -15.98847 -15.70874 -15.64045 -15.29481 -15.18777 -14.74214 -14.41974 -14.39114 -14.31019 -13.90807 -13.58747 -13.51687 -13.25942 -12.97676 -12.89127 -12.75591 -12.72518 -12.57458 -12.49249 -12.24918 -12.09690 -11.95896 -11.69520 -11.40800 -11.25871 -10.99919 -10.66770 -10.36479 -10.07770 -9.63915 -8.73677 -8.72765 -7.87198 -5.28322 -0.41402 -0.03654 1.05517 1.07345 1.25620 1.47522 1.50386 1.56603 2.12718 2.51047 2.52233 2.55218 3.18034 3.29695 3.45280 3.64153 3.67101 3.81257 3.87994 3.99726 4.04145 4.05897 4.32311 4.44617 4.46828 4.53665 4.55804 4.69626 4.77595 4.78072 4.83194 4.86088 4.91561 4.94908 5.11353 5.12622 5.23231 5.26451 5.34021 5.39687 5.45697 5.48427 5.49801 5.62385 5.75000 5.78979 6.18475 6.33224 6.35045 6.65492 7.14611 7.31362 7.84858 8.38694 9.21207 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029186 B = 0.001956 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.143084 B =14308.449933 C =14743.486186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.021 4.021 3 C -0.144 4.144 4 C 0.102 3.898 5 N -0.276 5.276 6 N -0.343 5.343 7 C 0.128 3.872 8 C -0.350 4.350 9 C 0.597 3.403 10 O -0.594 6.594 11 N -0.710 5.710 12 C 0.172 3.828 13 C -0.138 4.138 14 C -0.142 4.142 15 C 0.205 3.795 16 N -0.615 5.615 17 C -0.257 4.257 18 H 0.070 0.930 19 C -0.055 4.055 20 N -0.939 5.939 21 Si 0.968 3.032 22 H -0.275 1.275 23 H -0.295 1.295 24 H -0.281 1.281 25 C 0.139 3.861 26 C -0.084 4.084 27 C 0.154 3.846 28 C -0.150 4.150 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.205 0.795 33 H 0.204 0.796 34 H 0.223 0.777 35 H 0.409 0.591 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.015 0.985 40 H 0.056 0.944 41 H 0.250 0.750 42 H 0.030 0.970 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.087 0.913 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.584 26.021 -4.840 32.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.027 4.027 3 C -0.164 4.164 4 C -0.024 4.024 5 N -0.039 5.039 6 N -0.164 5.164 7 C -0.052 4.052 8 C -0.364 4.364 9 C 0.388 3.612 10 O -0.477 6.477 11 N -0.361 5.361 12 C 0.049 3.951 13 C -0.138 4.138 14 C -0.163 4.163 15 C 0.080 3.920 16 N -0.339 5.339 17 C -0.387 4.387 18 H 0.088 0.912 19 C -0.250 4.250 20 N -0.586 5.586 21 Si 0.796 3.204 22 H -0.200 1.200 23 H -0.221 1.221 24 H -0.207 1.207 25 C 0.013 3.987 26 C -0.123 4.123 27 C 0.033 3.967 28 C -0.169 4.169 29 H 0.112 0.888 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.222 0.778 33 H 0.221 0.779 34 H 0.239 0.761 35 H 0.245 0.755 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.129 0.871 39 H 0.033 0.967 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.106 0.894 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.550 26.744 -4.725 32.889 hybrid contribution 0.792 -2.119 0.390 2.295 sum -17.758 24.625 -4.335 30.669 Atomic orbital electron populations 1.20986 0.87151 1.04925 1.04370 1.20550 0.99034 0.91606 0.91464 1.21429 0.91257 1.00739 1.03003 1.22419 0.93031 0.88392 0.98519 1.46330 1.06143 1.05994 1.45467 1.77513 0.88869 1.17328 1.32665 1.24472 0.99246 0.90220 0.91295 1.19645 0.92649 0.92729 1.31423 1.17091 0.84253 0.84918 0.74964 1.90714 1.23212 1.79822 1.54002 1.45701 1.09359 1.05793 1.75214 1.20196 0.94251 0.78917 1.01778 1.20599 0.96346 1.01419 0.95458 1.22949 0.97783 0.97730 0.97796 1.19399 0.89279 0.95963 0.87323 1.44403 1.70658 1.12752 1.06095 1.19479 1.30889 0.92739 0.95562 0.91203 1.25743 0.99352 1.02613 0.97303 1.70153 1.47357 1.35687 1.05400 0.85325 0.77864 0.80594 0.76581 1.20043 1.22091 1.20695 1.21185 0.94346 0.92002 0.91121 1.20727 0.96099 1.01336 0.94089 1.19534 0.93740 0.86178 0.97245 1.20748 0.89550 1.01056 1.05585 0.88789 0.91033 0.87959 0.77789 0.77891 0.76070 0.75489 0.92162 0.91394 0.87104 0.96722 0.92537 0.94136 0.95214 0.92250 0.91818 0.89448 0.83983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.03 71.24 0.71 0.06 16 2 C -0.02 -0.25 5.89 -19.81 -0.12 -0.36 16 3 C -0.14 -1.01 9.67 22.03 0.21 -0.80 16 4 C 0.10 1.17 11.17 83.30 0.93 2.11 16 5 N -0.28 -5.80 3.86 -187.28 -0.72 -6.52 16 6 N -0.34 -8.08 12.57 -56.62 -0.71 -8.79 16 7 C 0.13 2.87 11.44 85.42 0.98 3.84 16 8 C -0.35 -9.34 6.17 -19.90 -0.12 -9.46 16 9 C 0.60 18.04 7.78 86.42 0.67 18.71 16 10 O -0.59 -21.59 15.71 -4.42 -0.07 -21.66 16 11 N -0.71 -18.99 5.54 -470.91 -2.61 -21.60 16 12 C 0.17 5.09 5.66 85.64 0.48 5.57 16 13 C -0.14 -4.56 5.22 -15.13 -0.08 -4.64 16 14 C -0.14 -5.41 9.47 27.11 0.26 -5.16 16 15 C 0.21 10.00 5.23 85.42 0.45 10.45 16 16 N -0.62 -30.94 3.01 -703.03 -2.11 -33.05 16 17 C -0.26 -14.19 9.71 84.03 0.82 -13.37 16 18 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 19 C -0.06 -3.11 5.01 84.86 0.43 -2.69 16 20 N -0.94 -55.75 11.08 21.65 0.24 -55.51 16 21 Si 0.97 45.38 29.58 68.60 2.03 47.41 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 C 0.14 5.55 6.59 86.32 0.57 6.12 16 26 C -0.08 -2.75 5.95 29.72 0.18 -2.57 16 27 C 0.15 3.82 6.76 39.50 0.27 4.08 16 28 C -0.15 -3.11 9.38 22.30 0.21 -2.90 16 29 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.07 0.52 8.09 -2.39 -0.02 0.50 16 31 H 0.10 0.05 8.10 -2.39 -0.02 0.03 16 32 H 0.21 -0.48 8.06 -2.91 -0.02 -0.50 16 33 H 0.20 0.92 8.06 -2.91 -0.02 0.89 16 34 H 0.22 3.41 7.46 -2.91 -0.02 3.39 16 35 H 0.41 9.20 7.38 -92.71 -0.68 8.52 16 36 H 0.06 1.88 7.78 -2.39 -0.02 1.86 16 37 H 0.07 2.03 8.11 -2.39 -0.02 2.01 16 38 H 0.11 3.83 7.73 -2.91 -0.02 3.80 16 39 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 3.12 6.41 -2.39 -0.02 3.11 16 41 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 42 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.06 2.31 7.96 -2.39 -0.02 2.29 16 44 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 45 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.14 3.39 7.12 -2.91 -0.02 3.37 16 Total: -1.00 -77.62 382.94 3.21 -74.41 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.32 Total: 16.32 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 6.84 Total: 8.99 kcal Atomic # 7 Polarization: -119.55 SS G_CDS: -5.92 Total: -125.46 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.07 Total: -21.66 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -77.62 3.21 -74.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000807253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.219 kcal (2) G-P(sol) polarization free energy of solvation -77.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds