Wall clock time and date at job start Tue Mar 31 2020 23:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40565 * 120.13491 * 2 1 4 4 C 1.34854 * 120.34369 * 179.97438 * 3 2 1 5 5 N 1.36678 * 120.64024 * 359.97438 * 4 3 2 6 6 C 1.36193 * 132.29508 * 180.36208 * 5 4 3 7 7 C 1.36575 * 107.09413 * 180.11082 * 6 5 4 8 8 C 1.47586 * 125.91939 * 179.84409 * 7 6 5 9 9 O 1.21595 * 120.00161 * 359.70953 * 8 7 6 10 10 N 1.34772 * 120.00197 * 179.71391 * 8 7 6 11 11 C 1.46502 * 120.00569 * 179.97438 * 10 8 7 12 12 C 1.50694 * 109.47861 * 179.97438 * 11 10 8 13 13 C 1.29457 * 117.69284 * 94.99351 * 12 11 10 14 14 C 1.50319 * 123.65117 * 180.57773 * 13 12 11 15 15 N 1.47010 * 109.16396 * 349.28755 * 14 13 12 16 16 C 1.36939 * 121.37262 * 222.96294 * 15 14 13 17 17 H 1.08006 * 119.99321 * 155.96770 * 16 15 14 18 18 C 1.38810 * 120.00352 * 335.97266 * 16 15 14 19 19 N 1.31617 * 119.99875 * 344.52484 * 18 16 15 20 20 Si 1.86807 * 119.99988 * 164.52017 * 18 16 15 21 21 H 1.48495 * 109.46984 * 60.00138 * 20 18 16 22 22 H 1.48500 * 109.46904 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47058 * 299.99897 * 20 18 16 24 24 C 1.47338 * 117.25069 * 42.95114 * 15 14 13 25 25 C 1.49964 * 117.69058 * 275.22495 * 12 11 10 26 26 N 1.34580 * 108.16362 * 359.57205 * 7 6 5 27 27 C 1.32235 * 109.02258 * 0.27213 * 26 7 6 28 28 C 1.35893 * 120.13539 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46946 * 90.00150 * 1 2 3 30 30 H 1.09001 * 109.46957 * 209.99766 * 1 2 3 31 31 H 1.08996 * 109.47016 * 329.99841 * 1 2 3 32 32 H 1.08005 * 119.82791 * 359.95978 * 3 2 1 33 33 H 1.08000 * 119.68009 * 179.97438 * 4 3 2 34 34 H 1.07993 * 126.45382 * 359.94206 * 6 5 4 35 35 H 0.96998 * 120.00142 * 359.97438 * 10 8 7 36 36 H 1.09006 * 109.46917 * 59.99057 * 11 10 8 37 37 H 1.09004 * 109.46730 * 300.00357 * 11 10 8 38 38 H 1.08003 * 118.17487 * 0.86945 * 13 12 11 39 39 H 1.09004 * 109.52258 * 109.19397 * 14 13 12 40 40 H 1.08999 * 109.52598 * 229.38084 * 14 13 12 41 41 H 0.97002 * 119.99820 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.78070 * 57.80258 * 24 15 14 43 43 H 1.09002 * 109.77840 * 178.61854 * 24 15 14 44 44 H 1.08995 * 109.43781 * 40.81758 * 25 12 11 45 45 H 1.09004 * 109.12988 * 281.42366 * 25 12 11 46 46 H 1.08001 * 120.32966 * 0.06330 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2127 1.2157 0.0000 4 6 3.5612 1.2206 0.0005 5 7 4.2621 0.0472 0.0016 6 6 5.5969 -0.2231 0.0086 7 6 5.7314 -1.5822 0.0034 8 6 7.0060 -2.3262 0.0047 9 8 8.0619 -1.7232 0.0056 10 7 6.9997 -3.6739 0.0049 11 6 8.2649 -4.4125 0.0056 12 6 7.9826 -5.8927 0.0063 13 6 7.9683 -6.5030 -1.1353 14 6 7.6893 -7.9718 -1.2913 15 7 7.7013 -8.6086 0.0337 16 6 8.3174 -9.8141 0.2397 17 1 8.6591 -10.0839 1.2281 18 6 8.5029 -10.6892 -0.8217 19 7 7.8352 -10.5151 -1.9425 20 14 9.7004 -12.1138 -0.6595 21 1 9.2756 -12.9924 0.4597 22 1 9.7159 -12.8936 -1.9232 23 1 11.0618 -11.5874 -0.3864 24 6 7.0234 -7.8962 1.1308 25 6 7.7329 -6.5540 1.3289 26 7 4.5001 -2.1256 0.0029 27 6 3.6011 -1.1559 0.0017 28 6 2.1893 -1.1753 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.6721 2.1507 -0.0007 33 1 4.0926 2.1608 0.0001 34 1 6.3982 0.5009 0.0143 35 1 6.1574 -4.1549 0.0045 36 1 8.8373 -4.1516 0.8959 37 1 8.8382 -4.1519 -0.8841 38 1 8.1726 -5.9255 -2.0249 39 1 6.7115 -8.1099 -1.7529 40 1 8.4568 -8.4237 -1.9196 41 1 7.9645 -11.1269 -2.6841 42 1 5.9787 -7.7262 0.8703 43 1 7.0851 -8.4846 2.0463 44 1 7.1119 -5.9057 1.9470 45 1 8.6862 -6.7206 1.8306 46 1 1.6569 -2.1149 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000915263.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:36 Heat of formation + Delta-G solvation = 91.079294 kcal Electronic energy + Delta-G solvation = -27900.801305 eV Core-core repulsion = 23985.557117 eV Total energy + Delta-G solvation = -3915.244188 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.17844 -39.55727 -38.04703 -37.55621 -34.91241 -34.60071 -32.81360 -31.24671 -30.79124 -30.31667 -29.65791 -27.65727 -26.83011 -24.77210 -23.76754 -22.88533 -22.55045 -22.12035 -21.01669 -20.17990 -18.50285 -17.68419 -17.40316 -16.79065 -16.40828 -15.83226 -15.62792 -15.38652 -15.12510 -14.91647 -14.77721 -14.38033 -14.06130 -13.95717 -13.71713 -13.54671 -13.29503 -13.01722 -12.90532 -12.56606 -12.23023 -12.09959 -12.04079 -11.87740 -11.51393 -11.29517 -11.07350 -10.87372 -10.70255 -10.63838 -10.38105 -10.30478 -10.09730 -9.79050 -9.54950 -9.27331 -8.85534 -8.64359 -8.21411 -8.00656 -6.70882 -5.76432 -3.15069 0.23992 0.81709 1.85520 2.09895 2.67470 2.96953 3.41472 3.46893 3.47587 3.48429 3.51817 3.72284 4.04353 4.25476 4.32435 4.52353 4.60112 4.75612 4.94459 5.05004 5.09470 5.12727 5.22998 5.26425 5.40335 5.44585 5.45375 5.58411 5.63042 5.83122 5.87877 5.97174 6.01756 6.10464 6.14477 6.23703 6.40790 6.50917 6.57473 6.61328 6.78871 6.92994 7.22214 7.29472 7.31967 7.39332 7.72647 7.76853 7.86672 8.27491 8.41500 9.22804 9.85670 10.44131 11.34035 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.002006 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.033983 B =13956.718374 C =14845.233029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.071 4.071 3 C -0.135 4.135 4 C 0.058 3.942 5 N -0.367 5.367 6 C -0.021 4.021 7 C 0.011 3.989 8 C 0.596 3.404 9 O -0.545 6.545 10 N -0.701 5.701 11 C 0.157 3.843 12 C -0.166 4.166 13 C -0.123 4.123 14 C 0.194 3.806 15 N -0.595 5.595 16 C -0.245 4.245 17 H 0.068 0.932 18 C -0.002 4.002 19 N -0.910 5.910 20 Si 0.905 3.095 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.144 3.856 25 C -0.090 4.090 26 N -0.462 5.462 27 C 0.230 3.770 28 C -0.078 4.078 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.166 0.834 34 H 0.196 0.804 35 H 0.411 0.589 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.042 0.958 40 H 0.093 0.907 41 H 0.254 0.746 42 H 0.024 0.976 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.967 26.661 3.457 30.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.077 4.077 3 C -0.155 4.155 4 C -0.063 4.063 5 N -0.040 5.040 6 C -0.156 4.156 7 C -0.122 4.122 8 C 0.381 3.619 9 O -0.422 6.422 10 N -0.351 5.351 11 C 0.034 3.966 12 C -0.166 4.166 13 C -0.144 4.144 14 C 0.069 3.931 15 N -0.318 5.318 16 C -0.374 4.374 17 H 0.086 0.914 18 C -0.200 4.200 19 N -0.555 5.555 20 Si 0.735 3.265 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.211 1.211 24 C 0.017 3.983 25 C -0.129 4.129 26 N -0.183 5.183 27 C -0.016 4.016 28 C -0.098 4.098 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.170 0.830 33 H 0.184 0.816 34 H 0.213 0.787 35 H 0.247 0.753 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.059 0.941 40 H 0.111 0.889 41 H 0.064 0.936 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.248 26.093 3.314 29.450 hybrid contribution 0.486 0.037 -0.086 0.495 sum -12.762 26.129 3.228 29.258 Atomic orbital electron populations 1.20784 0.89468 1.03549 1.03040 1.19772 0.97182 0.91937 0.98832 1.20767 0.92072 0.99406 1.03290 1.21655 0.93048 0.88644 1.02959 1.42773 1.07172 1.07851 1.46156 1.22594 0.83501 0.97880 1.11639 1.20694 0.92683 0.91041 1.07793 1.16917 0.85995 0.82248 0.76766 1.90791 1.31058 1.68937 1.51459 1.46017 1.10998 1.05305 1.72735 1.20525 0.84743 0.89291 1.01996 1.20469 1.07212 0.92674 0.96286 1.23284 0.95114 0.99920 0.96089 1.19759 1.00502 0.84632 0.88176 1.44122 1.62578 1.20387 1.04756 1.19142 1.30214 0.92629 0.95463 0.91416 1.24991 0.99779 0.97809 0.97410 1.70002 1.41594 1.38982 1.04952 0.86318 0.81349 0.82012 0.76797 1.20949 1.21660 1.21090 1.20955 0.93751 0.91092 0.92458 1.20752 1.00687 0.97837 0.93638 1.70873 0.97906 1.28790 1.20771 1.20938 0.94413 0.80109 1.06095 1.20198 0.87926 0.99881 1.01840 0.90437 0.90753 0.90961 0.83024 0.81626 0.78745 0.75290 0.91350 0.91420 0.88763 0.94077 0.88891 0.93574 0.95821 0.92464 0.92778 0.91783 0.82850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.37 10.02 36.01 0.36 -0.01 16 2 C -0.07 -0.43 5.88 -104.59 -0.62 -1.04 16 3 C -0.13 -0.65 9.67 -39.91 -0.39 -1.03 16 4 C 0.06 0.35 10.93 -16.59 -0.18 0.17 16 5 N -0.37 -3.64 2.93 -62.37 -0.18 -3.82 16 6 C -0.02 -0.24 11.47 -16.22 -0.19 -0.42 16 7 C 0.01 0.16 6.94 -83.45 -0.58 -0.42 16 8 C 0.60 9.45 7.82 -12.45 -0.10 9.35 16 9 O -0.54 -9.75 16.87 5.28 0.09 -9.66 16 10 N -0.70 -10.83 5.55 -62.51 -0.35 -11.18 16 11 C 0.16 2.53 5.66 -5.20 -0.03 2.50 16 12 C -0.17 -3.00 5.23 -101.00 -0.53 -3.53 16 13 C -0.12 -2.44 9.47 -35.78 -0.34 -2.78 16 14 C 0.19 4.70 5.23 -5.10 -0.03 4.67 16 15 N -0.60 -15.13 3.01 -173.67 -0.52 -15.65 16 16 C -0.25 -6.79 9.71 -15.06 -0.15 -6.94 16 17 H 0.07 1.83 7.88 -52.48 -0.41 1.42 16 18 C 0.00 -0.06 5.01 -17.43 -0.09 -0.15 16 19 N -0.91 -26.46 11.08 55.49 0.61 -25.85 16 20 Si 0.91 21.95 29.58 -169.99 -5.03 16.92 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 C 0.14 3.06 6.58 -3.53 -0.02 3.03 16 25 C -0.09 -1.64 5.94 -28.18 -0.17 -1.81 16 26 N -0.46 -6.53 11.01 -9.35 -0.10 -6.64 16 27 C 0.23 2.68 7.80 -156.04 -1.22 1.46 16 28 C -0.08 -0.67 9.75 -39.30 -0.38 -1.05 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 31 H 0.07 0.15 8.09 -51.93 -0.42 -0.27 16 32 H 0.15 0.25 8.06 -52.48 -0.42 -0.18 16 33 H 0.17 0.45 8.06 -52.49 -0.42 0.03 16 34 H 0.20 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.41 6.25 8.16 -40.82 -0.33 5.92 16 36 H 0.07 1.10 8.11 -51.93 -0.42 0.68 16 37 H 0.07 1.10 7.78 -51.93 -0.40 0.70 16 38 H 0.09 1.69 7.73 -52.48 -0.41 1.28 16 39 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.09 2.49 6.41 -51.93 -0.33 2.16 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 1.18 7.96 -51.93 -0.41 0.76 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 385.91 15.07 5.82 5.82 Total: -1.00 -33.92 385.91 -10.80 -44.72 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.50 Total: 3.34 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -4.63 Total: 2.00 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -0.54 Total: -63.13 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.92 -10.80 -44.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000915263.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.799 kcal (2) G-P(sol) polarization free energy of solvation -33.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds